BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14600.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471638 jgi|Araly1|471638|fgenesh2_kg.1__1592__AT1G14600.1 1424 0.0
Ahg484129 jgi|Araly1|484129|fgenesh2_kg.5__121__AT2G02060.1 320 1e-86
> Ahg471638 jgi|Araly1|471638|fgenesh2_kg.1__1592__AT1G14600.1
Length=898
Score = 1424 bits (771), Expect = 0.0
Identities = 860/902 (95%), Gaps = 9/902 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAGGTGTGGAAGAAGCAACGACGGAGTAATTGGTGGAGTAAGACCATACGTACGA 60
|||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||
Sbjct 1 ATGGGTAGGTGTGGAAGAAGCAGCGACGGAGGGATTGGTGGGGTTAGACCGTACGTACGA 60
Query 61 TCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACCGGAGTTTCGTTCACGCCGTT 120
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCTCCAGTGCCTCGTCTTAGATGGACGCCGGAGCTTCACCGGAGTTTCGTCCACGCCGTT 120
Query 121 GATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTC 180
Query 181 AAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGAATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGACTC 240
Query 241 ACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTCaagaagaagaagaagacaa 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 ACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTC---AAGAAGAAGAAGACAA 297
Query 301 gacaatgaagaagaTCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GACAATGAAGAAGATCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTT 357
Query 361 TTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAGCGACTGATAATGATGACGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAGCGACTGATAATGATGACGAT 417
Query 421 GACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCC 477
Query 481 ATCAAATTTCAGTCTCATCACTCTCTCGAGGCTGagaacacgaagaacatttggaaaaac 540
|||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||
Sbjct 478 ATCAAATTTCAGTCTCATCACTTTCTCGAGGCTGAAAACACGAAGAACAATTGGAAAAAC 537
Query 541 acatggcgagaaaacgaacacgaa---gaagaagaagaGTTATCGCTGTCTCTGTCGTTG 597
|||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||
Sbjct 538 ACATGGCGAGAAAACGAAAACGAACACGAAGAAGAAAAATTATCGCTGTCTCTGTCGTTG 597
Query 598 AATCATCCTCATAACCATCAACAAAGATGGAAAAGCAATGCTTCATCATCACTCAGTGAA 657
|||||||||||||| ||||||||| | |||| ||||||||| ||||||||||| ||||||
Sbjct 598 AATCATCCTCATAATCATCAACAACGTTGGAGAAGCAATGCATCATCATCACTAAGTGAA 657
Query 658 ACAAGCGAAGCAGTCTCATCTTCTTCTGGTCCATTCATCTTCAGAGATTGTTTTGCTTCT 717
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 658 ACAAGCGAAGCAGTCTCATCTTCTTCTGCTCCATTCATCTTCAGAGATTGTTTTGCTTCT 717
Query 718 TCGAAGATTGATCTTAATCTTAATCTCTCCTTTTCTCTACTCCATAGCTGAAGCTTT-GT 776
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 718 TCGAAGATTGATCTTAATCTTAATCTCTCGTTTTCTCTACTCCATAGCTGAAGCTTTTGT 777
Query 777 TCAGCTTTGTTCCTTTGTTCTAAATTTTAGCGTAGTGAACATTTAGATTGTTTTTAAACC 836
||||||||||||||||||| |||| ||||| ||||||| | ||||||||||||| |||||
Sbjct 778 TCAGCTTTGTTCCTTTGTTTTAAACTTTAGTGTAGTGACCTTTTAGATTGTTTTAAAACC 837
Query 837 ACCTTAAAAGTT-CCTAATCTTTTAGTTAGGCCTCTTGATTTGTGATTGTGATGtttttt 895
|| |||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 838 AC-TTAAAAATTTCCTAATCTTTTAGTTAGGCCTCTTGATTTTTGATTGTGATGATTTTT 896
Query 896 tt 897
||
Sbjct 897 TT 898
> Ahg484129 jgi|Araly1|484129|fgenesh2_kg.5__121__AT2G02060.1
Length=972
Score = 320 bits (173), Expect = 1e-86
Identities = 288/342 (84%), Gaps = 14/342 (4%)
Strand=Plus/Plus
Query 41 GAGTAAGACCATACGTACGATCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACC 100
|||| || || |||||||| |||||||| || || || |||||||||||||| |||||||
Sbjct 129 GAGTTAGGCCTTACGTACGGTCTCCGGTTCCACGACTTAGATGGACGCCGGATCTTCACC 188
Query 101 GGAGTTTCGTTCACGCCGTTGA-TTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTT 159
| |||||||||||||||| || || ||||| |||||| | |||||| |||||||||
Sbjct 189 GTTGTTTCGTTCACGCCGTCGAGATT-CTCGGTGGTCAACACCGAGCAACACCAAAACTT 247
Query 160 GTTCTGAAGATAATGGATGTCAAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAG 219
||||| ||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| |||
Sbjct 248 GTTCTTAAGATGATGGATGTGAAGGGACTCACCATTTCACATGTCAAAAGCCATCTTCAG 307
Query 220 ATGTATAGGGGATCCAGAATCACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCT 279
|||||||| |||| || || | | ||| | || ||||||||||| || | ||| |||||
Sbjct 308 ATGTATAGAGGAT-CA-AAGCTCACTT-TGGGGAAACCAGAAGAAAG--C-TCATCATCT 361
Query 280 TCaagaagaagaagaagacaagacaatgaagaag---aTCATCTTCATGACAACTTGTCT 336
|| || ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 362 TC---AATAAGAAGAAGACAAGACAGTGAAGAAGATAATAATCTTCATGACAACTTGTCT 418
Query 337 GTACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 378
||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 TTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5