BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14600.1 Length=942 Score E Sequences producing significant alignments: (Bits) Value Ahg471638 jgi|Araly1|471638|fgenesh2_kg.1__1592__AT1G14600.1 1424 0.0 Ahg484129 jgi|Araly1|484129|fgenesh2_kg.5__121__AT2G02060.1 320 1e-86 > Ahg471638 jgi|Araly1|471638|fgenesh2_kg.1__1592__AT1G14600.1 Length=898 Score = 1424 bits (771), Expect = 0.0 Identities = 860/902 (95%), Gaps = 9/902 (1%) Strand=Plus/Plus Query 1 ATGGGTAGGTGTGGAAGAAGCAACGACGGAGTAATTGGTGGAGTAAGACCATACGTACGA 60 |||||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||| Sbjct 1 ATGGGTAGGTGTGGAAGAAGCAGCGACGGAGGGATTGGTGGGGTTAGACCGTACGTACGA 60 Query 61 TCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACCGGAGTTTCGTTCACGCCGTT 120 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TCTCCAGTGCCTCGTCTTAGATGGACGCCGGAGCTTCACCGGAGTTTCGTCCACGCCGTT 120 Query 121 GATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTC 180 Query 181 AAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGAATC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 181 AAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGACTC 240 Query 241 ACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTCaagaagaagaagaagacaa 300 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 241 ACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTC---AAGAAGAAGAAGACAA 297 Query 301 gacaatgaagaagaTCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GACAATGAAGAAGATCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTT 357 Query 361 TTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAGCGACTGATAATGATGACGAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAGCGACTGATAATGATGACGAT 417 Query 421 GACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCC 477 Query 481 ATCAAATTTCAGTCTCATCACTCTCTCGAGGCTGagaacacgaagaacatttggaaaaac 540 |||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| Sbjct 478 ATCAAATTTCAGTCTCATCACTTTCTCGAGGCTGAAAACACGAAGAACAATTGGAAAAAC 537 Query 541 acatggcgagaaaacgaacacgaa---gaagaagaagaGTTATCGCTGTCTCTGTCGTTG 597 |||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||| Sbjct 538 ACATGGCGAGAAAACGAAAACGAACACGAAGAAGAAAAATTATCGCTGTCTCTGTCGTTG 597 Query 598 AATCATCCTCATAACCATCAACAAAGATGGAAAAGCAATGCTTCATCATCACTCAGTGAA 657 |||||||||||||| ||||||||| | |||| ||||||||| ||||||||||| |||||| Sbjct 598 AATCATCCTCATAATCATCAACAACGTTGGAGAAGCAATGCATCATCATCACTAAGTGAA 657 Query 658 ACAAGCGAAGCAGTCTCATCTTCTTCTGGTCCATTCATCTTCAGAGATTGTTTTGCTTCT 717 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 658 ACAAGCGAAGCAGTCTCATCTTCTTCTGCTCCATTCATCTTCAGAGATTGTTTTGCTTCT 717 Query 718 TCGAAGATTGATCTTAATCTTAATCTCTCCTTTTCTCTACTCCATAGCTGAAGCTTT-GT 776 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 718 TCGAAGATTGATCTTAATCTTAATCTCTCGTTTTCTCTACTCCATAGCTGAAGCTTTTGT 777 Query 777 TCAGCTTTGTTCCTTTGTTCTAAATTTTAGCGTAGTGAACATTTAGATTGTTTTTAAACC 836 ||||||||||||||||||| |||| ||||| ||||||| | ||||||||||||| ||||| Sbjct 778 TCAGCTTTGTTCCTTTGTTTTAAACTTTAGTGTAGTGACCTTTTAGATTGTTTTAAAACC 837 Query 837 ACCTTAAAAGTT-CCTAATCTTTTAGTTAGGCCTCTTGATTTGTGATTGTGATGtttttt 895 || |||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 838 AC-TTAAAAATTTCCTAATCTTTTAGTTAGGCCTCTTGATTTTTGATTGTGATGATTTTT 896 Query 896 tt 897 || Sbjct 897 TT 898 > Ahg484129 jgi|Araly1|484129|fgenesh2_kg.5__121__AT2G02060.1 Length=972 Score = 320 bits (173), Expect = 1e-86 Identities = 288/342 (84%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 41 GAGTAAGACCATACGTACGATCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACC 100 |||| || || |||||||| |||||||| || || || |||||||||||||| ||||||| Sbjct 129 GAGTTAGGCCTTACGTACGGTCTCCGGTTCCACGACTTAGATGGACGCCGGATCTTCACC 188 Query 101 GGAGTTTCGTTCACGCCGTTGA-TTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTT 159 | |||||||||||||||| || || ||||| |||||| | |||||| ||||||||| Sbjct 189 GTTGTTTCGTTCACGCCGTCGAGATT-CTCGGTGGTCAACACCGAGCAACACCAAAACTT 247 Query 160 GTTCTGAAGATAATGGATGTCAAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAG 219 ||||| ||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 248 GTTCTTAAGATGATGGATGTGAAGGGACTCACCATTTCACATGTCAAAAGCCATCTTCAG 307 Query 220 ATGTATAGGGGATCCAGAATCACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCT 279 |||||||| |||| || || | | ||| | || ||||||||||| || | ||| ||||| Sbjct 308 ATGTATAGAGGAT-CA-AAGCTCACTT-TGGGGAAACCAGAAGAAAG--C-TCATCATCT 361 Query 280 TCaagaagaagaagaagacaagacaatgaagaag---aTCATCTTCATGACAACTTGTCT 336 || || ||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 362 TC---AATAAGAAGAAGACAAGACAGTGAAGAAGATAATAATCTTCATGACAACTTGTCT 418 Query 337 GTACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 378 ||||| ||||||||||||||||||||||||||||||||||| Sbjct 419 TTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34958714889 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5