BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14620.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920358 jgi|Araly1|920358|scaffold_101639.1 1214 0.0
> Ahg920358 jgi|Araly1|920358|scaffold_101639.1
Length=744
Score = 1214 bits (657), Expect = 0.0
Identities = 707/732 (97%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 95 GATTGAGAAATGCCGAGATCATCTTTGCGGCTACTAGCTAAGCCTCTCTTGGAGAGCAGG 154
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 13 GATCGAGAAATGCAGAGATCATCTTTGCGGCTCCTAGCTAAGCCTCTCTTGGAGAGCAGG 72
Query 155 CGAGGGTTTTGCACGAGCTCTGATAAGATCGTAGCTTCGGTGCTTTTCGAGAGATTGCGC 214
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 73 CGAGGGTTTTGCACGAGCTCAGATAAGATCGTAGCTTCGGTGCTTTTCGAGAGACTACGC 132
Query 215 GTTGTGATACCCAAACCGGATCCTGCCGTTTACGCTTTCCAGGAGTTCAAATTCAATTGG 274
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 133 GTTGTGATACCCAAACCGGATCCTGCTGTTTACGCTTTCCAGGAGTTCAAATTCAATTGG 192
Query 275 CAACAGCAGTTTCGTCGTAGATATCCCGATGAGTTCTTAGACATTGCTAAGAACAGAGCC 334
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 193 CAACAGCAGTTTCGTCGTAGATATCCAGATGAGTTCTTGGACATTGCTAAGAACAGAGCC 252
Query 335 AAGGGTGAATACCAAATGGACTATGTACCTGCTCCTAGAATTACAGAGGCTGACAAGAAT 394
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 AAGGGTGAATATCAAATGGACTATGTACCTGCTCCTAGAATTACAGAGGCTGACAAGAAT 312
Query 395 AACGATAGGAAGTCATTATATAGAGCCCTAGACAAAAAGTTGTATCTTCTCATATTCGGC 454
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 313 AACGATAGGAAGTCATTATATAGAGCTCTAGACAAAAAGTTGTATCTTCTCATCTTCGGC 372
Query 455 AAGCCATTTGGAGCTACTAGTGACAAACCTGTTTGGCACTTCCCAGAGAAAGTCTATGAT 514
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 373 AAGCCATTTGGAGCTACTAGTGACAAACCTGTCTGGCATTTCCCAGAGAAAGTTTACGAT 432
Query 515 TCTGAGCCAACTCTTCGCAAGTGCGCGGAATCTGCTTTGAAGTCAGTCGTAGGAGACCTC 574
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 433 TCTGAGCCAACTCTTCGCAAGTGCGCGGAATCTGCTTTGAAGTCAGTCTTAGGAGACCTC 492
Query 575 ACTCACACATACTTTGTTGGAAATGCTCCAATGGCTCACATGGCCATACAACCTACAGAA 634
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 493 ACTCACACATACTTTGTTGGAAATGCTCCAATGGCTCACGTGGCCATACAACCTACAGAA 552
Query 635 GAAATGCCTGATTTGCCATCTTACAAGAGGTTCTTCTTCAAATGCAGTGTAGTAGCAGCA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GAAATGCCTGATTTGCCATCTTACAAGAGGTTCTTCTTCAAATGCAGTGTAGTAGCAGCA 612
Query 695 TCGAAATACGACATAAGCAACTGCGAGGATTTTGTGTGGGTAACCAAAGACGAGCTCTTG 754
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 613 TCGAAATACAACATAAGCAACTGCGAGGATTTTGTGTGGGTAACCAAAGATGAGCTTTTG 672
Query 755 GAATTCTTCCCTGAGCAAGCTGAATTCTTCAACAAGATGATCATTAGCTGAGCCACTCAC 814
||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 673 GAATTCTTCCCGGAGCAAGCAGAATTCTTCAACAAGATGATCATTAGCTGAGTCACTCGC 732
Query 815 ACCACAAAAACT 826
||||||||||||
Sbjct 733 ACCACAAAAACT 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5