BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14630.1 Length=813 Score E Sequences producing significant alignments: (Bits) Value Ahg911260 jgi|Araly1|911260|Al_scaffold_0001_1514 427 5e-119 > Ahg911260 jgi|Araly1|911260|Al_scaffold_0001_1514 Length=456 Score = 427 bits (231), Expect = 5e-119 Identities = 257/270 (95%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 452 AAGAATGACTATGACGAGAAGAAGAGGGTGGTGTATCCATTTGGAGTGGTAAAACCAGGT 511 ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 187 AAGAATGACTATGACGAAAAGAAGAGGGTAGTGTATCCATTTGGAGTGGTGAAACCAGGT 246 Query 512 GGTCGAGAAGAAGATATAACTCTAAATGACATTAATAAGAGGATTTTAATGCCATCGGCT 571 ||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| ||||| Sbjct 247 GGTCGAGAAGAAGATGTAACCCTAGATGACATTAATAAGAGGATTCTAATGCCACCGGCT 306 Query 572 AGGCCGGTTCGACATCCGGTTGGAGACTTTGCATGTCGTCCGTGTGTCTCTGCAGATGGA 631 ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 307 CGGCCGGTTCGACATCCGGTTGGAGACTTTGCGTGCCGTCCGTGTGTCTCTGCAGATGGA 366 Query 632 CCGGGTCTATCAGGCAAAGCCGTGGTTGCATTCACGAAGATACAAACATTAGGGAGGGGC 691 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 367 CCGGGTCTATCAGGCAAAGCCGTGGTTGCTTTCACGAAAATACAAACATTAGGGAGGGGC 426 Query 692 ACAATTACTATTATAAGAACTAAGGGATGA 721 |||||||||||||||||||||||||||||| Sbjct 427 ACAATTACTATTATAAGAACTAAGGGATGA 456 Score = 303 bits (164), Expect = 9e-82 Identities = 181/189 (96%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 173 ATGGAAATCGGGGACGTTTCCACCGGATACCTTGAAGACGCACTCATTGAATTCAGTGGG 232 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGAAATCGGGGACGTTTCCACCGGATACCTTGAAGACGCACTCATCGAATTCAGTGGG 60 Query 233 AGAAGCAAACGGAGACGTCTCTCGTTCAACGGCGCCGAGGACAAACCAGATAACGATTTA 292 ||| |||||||||||||||||||||||||||||||||||||||||||| || | ||| || Sbjct 61 AGAGGCAAACGGAGACGTCTCTCGTTCAACGGCGCCGAGGACAAACCAAATTATGATATA 120 Query 293 GACCATTCTCAGAATCATTGGGGTCTGTCTGAGAATTATAGTTGCACGAGTAGTCAGTTT 352 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 GACCATTCTCAGAATCATTGGGGCCTGTCTGAGAATTATAGTTGCACGAGTAGTCAGTTT 180 Query 353 GCAGACGAA 361 ||||| ||| Sbjct 181 GCAGA-GAA 188 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30040858596 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5