BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14630.1

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911260 jgi|Araly1|911260|Al_scaffold_0001_1514                    427    5e-119


> Ahg911260 jgi|Araly1|911260|Al_scaffold_0001_1514
Length=456

 Score =  427 bits (231),  Expect = 5e-119
 Identities = 257/270 (95%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  452  AAGAATGACTATGACGAGAAGAAGAGGGTGGTGTATCCATTTGGAGTGGTAAAACCAGGT  511
            ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  187  AAGAATGACTATGACGAAAAGAAGAGGGTAGTGTATCCATTTGGAGTGGTGAAACCAGGT  246

Query  512  GGTCGAGAAGAAGATATAACTCTAAATGACATTAATAAGAGGATTTTAATGCCATCGGCT  571
            ||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| |||||
Sbjct  247  GGTCGAGAAGAAGATGTAACCCTAGATGACATTAATAAGAGGATTCTAATGCCACCGGCT  306

Query  572  AGGCCGGTTCGACATCCGGTTGGAGACTTTGCATGTCGTCCGTGTGTCTCTGCAGATGGA  631
             ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  307  CGGCCGGTTCGACATCCGGTTGGAGACTTTGCGTGCCGTCCGTGTGTCTCTGCAGATGGA  366

Query  632  CCGGGTCTATCAGGCAAAGCCGTGGTTGCATTCACGAAGATACAAACATTAGGGAGGGGC  691
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  367  CCGGGTCTATCAGGCAAAGCCGTGGTTGCTTTCACGAAAATACAAACATTAGGGAGGGGC  426

Query  692  ACAATTACTATTATAAGAACTAAGGGATGA  721
            ||||||||||||||||||||||||||||||
Sbjct  427  ACAATTACTATTATAAGAACTAAGGGATGA  456


 Score =  303 bits (164),  Expect = 9e-82
 Identities = 181/189 (96%), Gaps = 1/189 (1%)
 Strand=Plus/Plus

Query  173  ATGGAAATCGGGGACGTTTCCACCGGATACCTTGAAGACGCACTCATTGAATTCAGTGGG  232
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGAAATCGGGGACGTTTCCACCGGATACCTTGAAGACGCACTCATCGAATTCAGTGGG  60

Query  233  AGAAGCAAACGGAGACGTCTCTCGTTCAACGGCGCCGAGGACAAACCAGATAACGATTTA  292
            ||| |||||||||||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct  61   AGAGGCAAACGGAGACGTCTCTCGTTCAACGGCGCCGAGGACAAACCAAATTATGATATA  120

Query  293  GACCATTCTCAGAATCATTGGGGTCTGTCTGAGAATTATAGTTGCACGAGTAGTCAGTTT  352
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  GACCATTCTCAGAATCATTGGGGCCTGTCTGAGAATTATAGTTGCACGAGTAGTCAGTTT  180

Query  353  GCAGACGAA  361
            ||||| |||
Sbjct  181  GCAGA-GAA  188



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040858596


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5