BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14640.1
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911261 jgi|Araly1|911261|Al_scaffold_0001_1515 3000 0.0
Ahg313937 jgi|Araly1|313937|fgenesh1_pm.C_scaffold_1002717 2316 0.0
Ahg922541 jgi|Araly1|922541|scaffold_103822.1 303 3e-81
> Ahg911261 jgi|Araly1|911261|Al_scaffold_0001_1515
Length=2337
Score = 3000 bits (1624), Expect = 0.0
Identities = 2047/2244 (91%), Gaps = 58/2244 (3%)
Strand=Plus/Plus
Query 1 ATGTTCAATTCGATGAAGATACTACCACTGGAGGCTCCTCCTGCTGACGGGAATTTAGGT 60
||||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1 ATGTTCAATTCGATGCAGATACTGCCACTGGAGGCTCCTCCTGCTGACGGTAACCTAGGT 60
Query 61 CCACTTCCTCCGTCGCAATTAACGGATGAAGAAATCAAAGAGAATGAGTTTCAAGGAGAG 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 61 CCACTTCCTCCGTCGCAATTAACGGATGAAGAAATCAAAGAGAAAGAGTTGCAAACAGAG 120
Query 121 CAAAACAATTCAATTCAAACTCCCATAGCTGTGGCTACTCATACGAATCCAATCGGAATC 180
|||||| |||||||||| ||| |||||||||||||||||||||||| | |||||||||
Sbjct 121 AAAAACATTTCAATTCAAGCTCACATAGCTGTGGCTACTCATACGAAGACTATCGGAATC 180
Query 181 ATTTATCCACCTCCAGAGATCCGAAAAATCGTCGAGACAACGGCTCAATTTGTTTCGCAA 240
|||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ATTTATCCACCTCCTGATATCAGAAAAATCGTCGAGACAACGGCTCATTTTGTTTCGCAA 240
Query 241 AACGGTTTGGCGTTTGGAAACAAAGTTAAAACAGAGAAAGCCAATAATGCTAATTTCAGC 300
|||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 241 AACGGTTTAGAGTTTGAAAACAAAGTTAAAACAGAGAAAGCCAATAACCCTAATTTCAAC 300
Query 301 TTTTTGAAAAGTGATAATCCTTATCATGGCTTTTACCGGTACAAGGTCACTGAGTA-TAG 359
|||||||||||||||||||||||||||| |||||||| | ||||| || ||||||| | |
Sbjct 301 TTTTTGAAAAGTGATAATCCTTATCATGCCTTTTACCAGCACAAGATCGCTGAGTACT-G 359
Query 360 TTG-TCATATTCGTGACGGAGCTCAAGGTACTGATGTAGATGATACAGAAGAT-CCCAA- 416
|| ||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 360 -TGCTCAGATTCGAGACGGAGCTCAAGGTACTGATTTTGATGATACAGAAGATCCCCAAC 418
Query 417 ---A--------C-T-TGATGATGAGTCTGATGCAAAACCTGACCTTCAGGCTCAATTTA 463
| | | || |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 419 TTGATCCTGCTGCTTCTGCTGATGAGTCTCATGCAAAACCTGACCTTCAGGATCAATTTA 478
Query 464 GGGCTCCTCGTAAGATTTTAGAAGCACCTGAACCTGAGAAGTATACTGTTAGACTTCCTG 523
||| ||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 479 GGGTTCCTCGTAAGACTTTAGAAGCTCCTGAACCTGACAAGTATACAGTTAGACTTCCT- 537
Query 524 A-AGGGATCATGGAGGCTGAGCTTGATATTATTAAGCACACGGCGCAGTTTGTGGCGCGG 582
| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 538 ATAGGGATCATGGAGGAGGAGCTTGATATTATTAAGCATACAGCGCAGTTTGTGGCGCGG 597
Query 583 AATGGTCAATCGTTTTTAAGGGAATTGATGCGTAGAGAGGTGAATAATTCTCAGTTTCAG 642
||||| |||| |||||||||| ||||||| |||||||| |||| ||| |||||||||||
Sbjct 598 AATGGGGAATCCTTTTTAAGGGGATTGATGAGTAGAGAGATGAACAATACTCAGTTTCAG 657
Query 643 TTTATGAAGCCAACACATAGTATGTTCACTTTTTTCACTTCTTTGGTTGATGCGTATTCT 702
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 658 TTTATGAAGCCAACACATAGTATGTTCACTTTTTTCACTTCTCTGGTTGATGCGTATTCA 717
Query 703 GAAGTATTGATGCCTCCCAGAGATTTGAAAGAAAAGCTGAGAAAGAGTGTTGCTGATTTG 762
||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 718 GAAGTTTTAATGCCTCCCAGAGACTTGAAAGAAAAGCTGAGAAAGAGTGTGGCTGATTTG 777
Query 763 ACGACTGTTCTCGAGCGTTGTTTGAATCGGCTTGAGTGGGATCGTTTCCaggaggaggag 822
||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 778 ACGACTGTTCTTGAGCGTTGTTTGAATCGGCTTGAATGGGATCGTTCCCAGGAGGAGGAG 837
Query 823 aagaacaaagaagaggatgagaaagagaaggagagagTGCAGATGG-TTATGATTGATTG 881
| ||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 838 AGGAAGAAAGAAGAGGATGAGAAAGAGAAGGAGAGAGTGCATATGGCTT-TGATTGATTG 896
Query 882 GAAAGATTTTGCAGTTGTTGAGTCTATAGATTTTGCAGACGAGGAGGATAAAGATTTGCC 941
| | |||||||||||||||||||| |||||||||| ||||||||| ||| |||| ||||
Sbjct 897 GCATGATTTTGCAGTTGTTGAGTCGATAGATTTTGTAGACGAGGAAGATGAAGAGATGCC 956
Query 942 AATGCCTATGACACTTGAGGAGGTTATTAGGAGGAGCAAAGTTTCAGCCATGGAAGAAGA 1001
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 957 AATGCCTATGACACTTGAGGAGGTTATAAGGAGGAGCAAAGTATCAGCCATGGAAGAAGA 1016
Query 1002 TGAAATTGTTGAGCCTGGAAAGGAAGTTGAGATGGATATGGATGAAGAAGAAGTTAAGCT 1061
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1017 TGAAATTGTTGAGCCTGGAAAGGAGGTTGAAATGGAAATGGATGAAGAAGAAGTTAAGCT 1076
Query 1062 TGTTGCAGAAGGAATGAGAGCAGCGAACCTGGAAGAGTATGTTGGCTCTGTGGAGA-T-- 1118
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 1077 TGTTGCAGAAGGAATGAGAGCAGCAAACCTAGAAGAGTATGTTGGCTCTGTGGAGATTGA 1136
Query 1119 ---TG-A-A----GAAGAAGCACCAATGAGAATTGTTAAGAACTGGAAGAGGCCTGAAGA 1169
|| | | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 AAATGTACACTGTGAAGAAGCACCAATGAGAATTGTTAAGAACTGGAAGAGGCCAGAAGA 1196
Query 1170 TAGGTTTCTGACAGAGAGAGATTCGAGTAAAGTTGTTATATCACGGATTACTGGTGAGCT 1229
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1197 TAGGTTTCTGACAGAGAGAGATTCGAGTAAAGTTGTTATATCACCAATCACTGGTGAGCT 1256
Query 1230 GATTCCCATTACCGAGATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTTAA 1289
||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||
Sbjct 1257 CATTCCCATTACAGAGATGTCTGAGCACATGCGGATTTCACTTATCGATCCTAAGTTCAA 1316
Query 1290 AGAACAGAAGGATCGGATGTTTGCTAAGATTCGTGAGACAACTCTCGCACAAGATGATGA 1349
||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1317 AGAGCAGAAAGATCGGATGTTTGCTAAGATTCGTGAGACCACACTTGCACAAGATGATGA 1376
Query 1350 GATTGCTAAAAACATTGTCGGGTTGGCCCGCCTCCGTCCTGATATCTTTGGAACAACAGA 1409
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1377 GATTGCTAAAAACATAGTCGGGTTGGCCCGTCTGCGTCCTGATATCTTTGGAACAACGGA 1436
Query 1410 AGAAGAAGTTTCAAATGCTGTAAAAGCAGATATTGAGAAAAAAGATGAGCAACCGAAACA 1469
||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1437 AGAAGAAGTCTCAAATGCTGTAAAAGCAGAGATTGAGAAGAAAGATGAGCAACCAAAACA 1496
Query 1470 AGTAATATGGGATGGTCACACTGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCA 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AGTAATATGGGATGGTCACACTGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCA 1556
Query 1530 GAACTCCAATGGAGAGCAAGGCGATGGCGTTTATGGTGATCCCAATAGCTTCCCTGGTCC 1589
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1557 GAACTCAAATGGAGAGCAAGGCGATGGAGTTTATGGTGATCCCAATAGCTTCCCTGGTCC 1616
Query 1590 AGCTGCTTTTCCTCCTCCTCGACCAGGTGTCCCAACTGTCCGGCCACTGCCACCACCTCA 1649
||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1617 AGCCGCTCTTCCTCCTCCTCGACCAGGTGTCCCAACAGTCCGGCCATTGCCACCACCTCC 1676
Query 1650 AAATCTCGCCTTGAACCTTCCTCGTCCTCCTCCTTCTGTTCAGTACCCTGGTGCACCAAG 1709
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1677 TAATCTCGCCTTGAACCTCCCTCGTCCTCCTCCTTCTGTTCAGTACCTTGGTGCACCAAG 1736
Query 1710 GCCATTAGGTGTTCCAATGATGCAGCCCATGTATCAACAACACCAGCTCTCTATGTCTGG 1769
||||||||||| ||| ||||| |||||||||||||||||||| |||||||| ||| ||||
Sbjct 1737 GCCATTAGGTGATCCGATGATTCAGCCCATGTATCAACAACATCAGCTCTCGATGCCTGG 1796
Query 1770 GCCACATGGACATCCTTCAATGATGATG-AGTCGACCACCACAAATGCAACCTGTTATGC 1828
|||||||||||| ||||| ||||||||| | || ||||||||||||||| ||||||||||
Sbjct 1797 GCCACATGGACACCCTTCGATGATGATGCA-TCCACCACCACAAATGCAGCCTGTTATGC 1855
Query 1829 GTGTGCCGCCTCCACCGGGATCTCAGTTTTCTCATATGCAAGTTCCTCAACCTTATGGTC 1888
||||||| |||||||||||||||||||| || | | ||||||||||||
Sbjct 1856 ATGTGCCGTCTCCACCGGGATCTCAGTTT--------GC---T-C---AACCTTATGGTC 1900
Query 1889 AGCTTCCACCGCTTTCGATGGGGATGATGCA-----ACC-ACCACCTATGGCTGAGATGC 1942
|||||||||||| |||||||||||||||||| ||| |||||||||| |||| ||||
Sbjct 1901 AGCTTCCACCGCATTCGATGGGGATGATGCACGTGCACCCACCACCTATGCCTGAAATGC 1960
Query 1943 CTCCTCCTCCACCACCCGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAAA 2002
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1961 CTCCTCCACCACCACCCGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAGA 2020
Query 2003 GACAGAAGCTCGATGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGG 2062
|||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2021 GACAAAAGTTCGTTGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGTATCCGG 2080
Query 2063 GTCCGGCTACAATCAGGGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCA 2122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2081 GTCCGGCTACAATCAGGGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCA 2140
Query 2123 CAGTGCAGTCGTTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAAATGC 2182
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 2141 CAGTGCAGTCGTTATCCGAAAATGTGGGAAGTTTGAAGGAGAAAATAGCTGGAGAGATGC 2200
Query 2183 AAATTCCAGCAAACAAACAGAAGT 2206
||||||||||||||||||||||||
Sbjct 2201 AAATTCCAGCAAACAAACAGAAGT 2224
> Ahg313937 jgi|Araly1|313937|fgenesh1_pm.C_scaffold_1002717
Length=2337
Score = 2316 bits (1254), Expect = 0.0
Identities = 1926/2244 (86%), Gaps = 71/2244 (3%)
Strand=Plus/Plus
Query 10 TCGATGAAGATACTACCACTGGAGGCTCCTCCTGCTGACGGGAATTTAGGTCCACTTCCT 69
|||||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 10 TCGATGCAGATACTGCCACTGGAGGCTCCTCCTACCGACGGGAAGTTAGGTCCACTTCCT 69
Query 70 CCGTCGCAATTAACGGATGAAGAAATCAAAGAGAAT-GAGTTTCAAGGAGAGCAAAACAA 128
|||||||||||||| ||| | ||| || ||||| || ||||| |||| ||||||||||||
Sbjct 70 CCGTCGCAATTAACTGATCAGGAAGTCGAAGAG-ATGGAGTTGCAAGCAGAGCAAAACAA 128
Query 129 TTCAATTCAAACTCCCATAGCTGTGGCTACTCATACGAA-TCCAATCGGAATCATTTATC 187
||||| |||| |||| ||||| || ||||| || || | || ||||| ||| |||
Sbjct 129 TTCAAATCAAGCTCCGGCGGCTGTTGCGACTCACAC-AAGGACTATTGGAATTATTCATC 187
Query 188 CACCTCCAGAGATCCGAAAAATCGTCGAGACAACGGCTCAATTTGTTTCGC-AAAACGGT 246
|||||||||| ||| ||| || || |||| ||||||||| |||||||| | |||||||
Sbjct 188 CACCTCCAGATATCAGAACTATTGTTGAGAAAACGGCTCAGTTTGTTTC-CAAAAACGGG 246
Query 247 TTGGCGTTTGGAAACA-AAG-TTAAAACAGAG-AAAGCCAATAATGCTAATTTCAGCTTT 303
|||| |||| |||| | | | || | || || | || ||||| || |||| ||||
Sbjct 247 TTGGAGTTT-GAAA-AGAGGATT-ATTGTTAGTAATGAAAAGAATGCCAAGTTCAACTTT 303
Query 304 TTGAAAAG-TGATAATCCTTATCATGGCTTTTACCGGTACAAGGTCACTGAGTATAGTTG 362
||||| || | | |||||||||||| |||||||| | ||||| ||||||| || | ||
Sbjct 304 TTGAAGAGCTCA-GATCCTTATCATGCCTTTTACCAGCACAAGCTCACTGAATACCG-TG 361
Query 363 -TCA-TATTCGTGACGGAGCTCA-A-GGTACTGAT-GT--AGATGATACAGAAGATCCCA 415
||| | | ||| || ||| | ||||| ||| | | |||||| | | | |
Sbjct 362 CTCAGGGTAC-TGA-TGA-TTCAGATGGTACAGATCTTCAACTTGATACTGCTGCT-GCT 417
Query 416 AACTTGATG-ATGAGTC---TGATGCAAAACCTGACCTTCAGGCTCAATTTAGGGCTCCT 471
| ||| | |||| | ||||||| |||| || ||||||||||| |||||| ||||
Sbjct 418 GA--TGA-GTCTGAGGCAGGTGATGCACAACCCGATCTTCAGGCTCAGTTTAGGATTCCT 474
Query 472 CGTAAGATTTTAGAAGCACCTGAACCTGAGAAGTATACTGTTAGACTTCCTGAAGGGATC 531
| |||| | ||||| | || || |||||||||||||| |||||||||||||||||||||
Sbjct 475 CCTAAGCCTCTAGAACCTCCGGAGCCTGAGAAGTATACAGTTAGACTTCCTGAAGGGATC 534
Query 532 ATGGAG-GCTGAGCTTGATATTATTAAGCACACGGCGCAGTTTGTGGCGCGGAATGGTCA 590
| || | | ||||||||||||||||||| || || ||||||||||| |||||||| |
Sbjct 535 ACGG-GCGAGGAGCTTGATATTATTAAGCTTACAGCACAGTTTGTGGCACGGAATGGGAA 593
Query 591 ATCGTTTTTAA-GGGAATTGATGCGTAGAGAGGTGAATAATTCTCAGTTTCAGTTTATGA 649
||||||||||| ||| ||||| | ||||||| | || ||| ||||||||||||||||||
Sbjct 594 ATCGTTTTTAACGGG-ATTGACGAGTAGAGAAATCAACAATCCTCAGTTTCAGTTTATGA 652
Query 650 AGCCAACACATAGTATGTTCACTTTTTTCACTTCTTTGGTTGATGCGTATTCTGAAGTAT 709
||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||| |
Sbjct 653 AGCCAACACATAGCATGTTCACTTTTTTTACTTCTCTGGTTGATGCGTATTCAGAAGTTT 712
Query 710 TGATGCCTCCCAGAGATTTGAAAGAAAAGCTGAGAAAGAGTGTTGCTGATTTGACGACTG 769
| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 713 TAATGCCTCCCAAAGATTTGAAAGAAAAGCTGAGAAAGAGTGTTGCTGATTTGACTACTG 772
Query 770 TTCTCGAGCGTTGTTTGAATCGGCTTGAGTGGGATCGTTTC-Caggaggaggagaagaac 828
|||| |||||||||||| |||| ||||| |||||||| ||| |||||| || |||||||
Sbjct 773 TTCTTGAGCGTTGTTTGCATCGTCTTGAATGGGATCG-TTCTCAGGAGCAGCAGAAGAAG 831
Query 829 aaagaagaggatgagaaagagaaggagagagTGCAGATGGTTATGATTGATTGGAAAGAT 888
||||||||||||||||||||| |||| |||||||||||| ||||||||||||| | |||
Sbjct 832 AAAGAAGAGGATGAGAAAGAGCTGGAGCGAGTGCAGATGGCTATGATTGATTGGCATGAT 891
Query 889 TTTGCAGTTGTTGAGTCTATAGATTTTGCAGACGAGGAGGATAAAGATTTGCCAATGCCT 948
|||| || |||||||| ||||||||||| |||||||| ||| |||| || ||| ||||
Sbjct 892 TTTGTGGTGGTTGAGTCGATAGATTTTGCGGACGAGGAAGATGAAGAGTTACCACCGCCT 951
Query 949 ATGACACTTGAGGAGGTTATTAGGAGGAGCAAAGTTTCAGCCATGGAAGAAGATGAAATT 1008
||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 952 ATGACACTTGACGAGGTTATAAGGAGGAGCAAAGCATCAGCCATGGAAGAAGATGAAATT 1011
Query 1009 GTTGAGCCTGGAAAGGAAGTTGAGATGGATATGGATGAAGAAGAAGTTAAGCTTGTTGCA 1068
||||||||||||||||| || || ||||| ||||| |||||||||||||||||||| |||
Sbjct 1012 GTTGAGCCTGGAAAGGAGGTCGAAATGGAAATGGACGAAGAAGAAGTTAAGCTTGTCGCA 1071
Query 1069 GAAGGAATGAGAGCAGCGAACCTGGAAGAGTATGTT-GGCTCTG----TGGAGATTGAAG 1123
||||||||||||||||| ||||| |||||| ||||| | | || || | | ||| |
Sbjct 1072 GAAGGAATGAGAGCAGCAAACCTAGAAGAGAATGTTAAGAT-TGAAAATGTACA-TGATG 1129
Query 1124 AAGAAGCACCAATGAGAATTGTTAAGAACTGGAAGAGGCCTGAAGATAGGTTTCTGACAG 1183
|||||||||| ||||||||||||||||||||||||||||| ||||| ||| | | ||||
Sbjct 1130 AAGAAGCACCTATGAGAATTGTTAAGAACTGGAAGAGGCCAGAAGACAGGATCCCAACAG 1189
Query 1184 AGAGAGATTCGAGTAAAGTTGTTATATCACGGATTACTGGTGAGCTGATTCCCATTACCG 1243
|||||||| | | |||||||||| |||||| |||||||| |||||||||||||| | ||
Sbjct 1190 AGAGAGATCCAACTAAAGTTGTTGTATCACCAATTACTGGCGAGCTGATTCCCATCAACG 1249
Query 1244 AGATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTTAAAGAACAGAAGGATC 1303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1250 AGATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTCAAAGAACAGAAGGATC 1309
Query 1304 GGATGTTTGCTAAGATTCGTGAGACAACTCTCGCACAAGATGATGAGATTGCTAAAAACA 1363
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1310 GGATGTTTGCTAAGATTCGTGAAACCACTCTTGCACAAGATGATGAGATTGCTAAAAACA 1369
Query 1364 TTGTCGGGTTGGCCCGCCTCCGTCCTGATATCTTTGGAACAACAGAAGAAGAAGTTTCAA 1423
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1370 TAGTCGGGTTGGCCCGCCTGCGTCCGGATATCTTTGGAACAACAGAAGAAGAAGTCTCAA 1429
Query 1424 ATGCTGTAAAAGCAGATATTGAG-A-AA-AAAGATGAGCAACCGAAACAAGTAATATGGG 1480
|||||||||||||||| |||||| | || ||||||||||| || || ||||| |||||||
Sbjct 1430 ATGCTGTAAAAGCAGAGATTGAGAAGAAGAAAGATGAGCAGCCCAAGCAAGTGATATGGG 1489
Query 1481 ATGGTCACACT-GGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCAGAACTCCAAT 1539
||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1490 ATGGTCACA-TAGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCAGAACGCTAAT 1548
Query 1540 -G-GA-GAGCAAGGCGATGGCGTTTATGGTGATCCCAATAGCTTCCCTGGTCCAGCTGCT 1596
| || |||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1549 GGAGAGGAGCAAGGTGATGGCGTTTACGGAGATCCCAATAGCTTCCCTGGTCCAGCTGCT 1608
Query 1597 TTTCCTCCTCCTCGACCAGGTGTCCCAACT-GTCCGGCCACTGCCACCACCTCAAAATCT 1655
||||||||||||||||||||||||||| | ||||| ||| | ||||| |||| |||||
Sbjct 1609 CTTCCTCCTCCTCGACCAGGTGTCCCAA-TAGTCCGACCATTACCACCCCCTCCTAATCT 1667
Query 1656 CGCCTTGAACCTTCCTCGTCCTCCTCCTTCTGTTCAGTACCCTGGTGCACCAAGGCCATT 1715
|||| ||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 1668 CGCCCTGAACCTCCCTCGTCCTCCCCCTTCTGCTCAGTACCCCGGTGCACCAAGGCCATT 1727
Query 1716 AGGTGTTCCAATGATGCAGCCCATGTATCAACAACACCAGCTCTCTATGTCTGGGCCA-C 1774
||||||||| |||||||| || ||| |||||||||||||| |||| ||| | |||||| |
Sbjct 1728 AGGTGTTCCGATGATGCAACCTATGCATCAACAACACCAGTTCTCGATGCCGGGGCCACC 1787
Query 1775 ATGGACATCCTTCA-ATGATGATGAGTCGACCACCACA-A--AT-GCA-A-CCTGTTATG 1827
| ||||| || || |||||||||| ||||||||||| | || ||| | |||| ||||
Sbjct 1788 A-GGACAGCC-GCAGATGATGATGAACCGACCACCACAGATGATGGCACAGCCTGGTATG 1845
Query 1828 CGTGTGCCGCCTCCACCGGGATCTCAGTTTTCTCATATGCAAGTTCCTCA-ACCTTATGG 1886
| |||||| ||||||||||||||||||||| ||| ||||||| ||||| | |||||||||
Sbjct 1846 CATGTGCCACCTCCACCGGGATCTCAGTTTGCTCCTATGCAAATTCCT-AGACCTTATGG 1904
Query 1887 TCAGCTTCCACCGCT-TTCGATGGGGATGATGCAACCACCACCTATGGCTGAGATGCCTC 1945
||||||||||||| | | | ||||||||||||||||||||||||||| ||| |||| |||
Sbjct 1905 TCAGCTTCCACCG-TCTGCAATGGGGATGATGCAACCACCACCTATGCCTGGGATGGCTC 1963
Query 1946 CTCCTCCACCACCCGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAAAGAC 2005
|||||||||| | | |||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1964 CTCCTCCACCTCATGAGGAGGCACCACCTCCTCTTCCTGAGGAACCAGAGCCAAAGAGAC 2023
Query 2006 AGAAGCTCGATGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTC 2065
| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 AAAAGTTCGACGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTC 2083
Query 2066 CGGCTACAATCAGGGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCACAG 2125
||||||||||||||||||||| |||||||| | ||||||| |||||||| ||||||||||
Sbjct 2084 CGGCTACAATCAGGGTTTCTATGCCAAACGTGGATGATGGGCAAGTCATTGAGATCACAG 2143
Query 2126 TGCAGTCGTTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAAATGCAAA 2185
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2144 TGCAGTCATTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAGATACAAA 2203
Query 2186 TTCCAGCAAACAAACAGAAG-TAA 2208
|||||||||||||||||||| |||
Sbjct 2204 TTCCAGCAAACAAACAGAAGATAA 2227
> Ahg922541 jgi|Araly1|922541|scaffold_103822.1
Length=431
Score = 303 bits (164), Expect = 3e-81
Identities = 263/308 (85%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 1899 GCTTTCGATGGGGATGATGCAACCACCACCTATGGCTGAGATGCCTCCTCCTCCACCACC 1958
|||||| |||||||||||| | |||||| ||||| |||| ||||||||||| ||||||||
Sbjct 18 GCTTTCAATGGGGATGATGGACCCACCATCTATGCCTGAAATGCCTCCTCCACCACCACC 77
Query 1959 CGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAAAGACAGAAGCTCGATGA 2018
|||||||||||||||||||| |||||||||||||||||||| ||||| ||| | |||||
Sbjct 78 CGGGGAGGCACCACCGCCTCAACCTGAGGAGCCAGAGCCAAAGAGACAAAAGTTAGATGA 137
Query 2019 GTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCCGGCTACAATCAG 2078
|||||| ||||||||||||||||| |||||| |||| ||||||| | ||| | |
Sbjct 138 GTCAGCACTTGTTCCAGAAGACCAATTTCTTTCTCAACATCCGG-T-----TAC--T-A- 187
Query 2079 GGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCACAGTGCAGTCGTTATC 2138
| |||||||| | |||||||||| | ||| ||||||| ||||||| |||||||
Sbjct 188 -------A-GCCAAACGTGGATGATGGACATGACATTGAGATCATAGTGCAGCCGTTATC 239
Query 2139 CGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAAATGCAAATTCCAGCAAACAA 2198
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 240 TGAAAACGTGGGAAGTTTGAAGGAGAAAATAGTTGGGGAGATGCAAATTCCAGCAAACAA 299
Query 2199 ACAGAAGT 2206
||||||||
Sbjct 300 ACAGAAGT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83112914590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5