BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14680.1
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920363 jgi|Araly1|920363|scaffold_101644.1 1288 0.0
> Ahg920363 jgi|Araly1|920363|scaffold_101644.1
Length=910
Score = 1288 bits (697), Expect = 0.0
Identities = 817/875 (93%), Gaps = 7/875 (1%)
Strand=Plus/Plus
Query 1 ATGGATCTCTCGCGAGAAGTCGATGACTTTATCAAAGAGACAATCGATCACTCTTTAGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 21 ATGGATCTCTCGCGAGAAGTCGATGACTTTATCAAAGAGACAATCGATCACTCCTTAGGG 80
Query 61 CTTCCGATATCCATGGACGTTCTCCAGAAAAAGCTCTACACGGCGGAAGAATCTCAGCGT 120
|||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 81 CTTCCGATCTCCATGGATGCTCTCAAGAAAAAGCTCTACACGGCGGAAGAATCTCAGCGT 140
Query 121 CGTCTCCGTGAACAGTATCTATCTCTGGTTTCGAGATTGAAAGAGAAAGAAAAAGTAATC 180
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 141 CGTCTCCGTGAACAATATCTATCTCTCGTTTCGAGATTGAAAGAGAAAGACAAAGTAATC 200
Query 181 GATCTCGTTAGATCCGAAGCGAGTATGAATGCCCAGTCGCTGAAGAAATTCGTCGAAGAG 240
|||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 201 GATCTCGTGAGATCCGAAGCGAGTATGAATGCTCAGTCGTTGAAGAAATTCGTCGAAGAG 260
Query 241 AATCAGAAATTGGGAAGCGAGCGCGAGGATTTGGTGAATCAGTGTAAGAAGTGGGAAAAA 300
||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 261 AATCAGAAATTGGCAAGTGAGTGCGAGGATTTGGTGAATCAGTGTAAGAAGTGGGAAAGA 320
Query 301 GAATGCT-TTCTTTATCATCAAGATCGTGAATCACTCATGGAGTTCGGGAACGAAACTGA 359
||||| | |||||||||||||||||||||||||||| ||||| || || || ||||||||
Sbjct 321 GAATG-TATTCTTTATCATCAAGATCGTGAATCACTGATGGAATTTGGAAATGAAACTGA 379
Query 360 CGAAAGGGCTAGAGAAGCAGAATCTAGGGTTCGTGAATTGGAGGAAGAAGTTAGAAAAAT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CGAGAGGGCTAGAGAAGCAGAATCTAGGGTTCGTGAATTGGAGGAAGAAGTTAGAAAAAT 439
Query 420 GTCTGATGAAATCAAGAGCCGGATCGAATCTGAAGAAGATTGTTTGGTTGATTCAATATT 479
||||||||||||||||| || |||||||||||||| || ||||||||||||||||| ||
Sbjct 440 GTCTGATGAAATCAAGAATCGAATCGAATCTGAAGAGGAGTGTTTGGTTGATTCAATTTT 499
Query 480 GGCATCGTTCGTTAGTAAAGATGAGAGTATATCATTGGGGCGTATCTTCTTGGAGGCTAA 539
| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 500 GACATCGTTCGTTAGCAAAGATGAGAGTAAATCATTGGGGCGTATCTTCTTGGAGGCTAA 559
Query 540 TAGTGAAGAAGACAAATGTTGTGAAACTTTGTTGAGGAAATGGGATCAGTTAAAGCCAAC 599
|| |||||||| |||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 560 C-GTT--GAAGACAAGTGTTGTCAAACATTGTTGAGAAAATGGGATCAGTTAAAGCCAAC 616
Query 600 GACGCAAAAGTTTGTGTCTTTAGTGTCAATGGTGAAGAGAATTGAAAAGGAGAAAGAATG 659
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 617 AACGCAAAAGGTTGTGTCTTTAGTGTCAATGGTGAAGAGAATTGAGAAGGAGAAAGAATG 676
Query 660 TCTCAT-TATGAATCTTGCTAAAGCAGAGCAAGAAGTTGAACTTGTGAGCGAGCAAAACA 718
|||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 677 TCTCATCT-TGAATCTTGCTAAAGCTGAGCAAGAAGTAGAACTTGTGAGCGAGCAAAACA 735
Query 719 GAGAGCTGGATAGAGAAAACCGCAAGTTTTTGAGGCAATGTTCTGCAGAGAGAAGCCATG 778
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 736 GAGAGCTGGATAGAGAAAATCGCAAGTTTTTGAGGCAATGTTGTGCAGAGAGAAGCCACG 795
Query 779 GATCTAACAAGTTCAACAAGAGAAAGAGTATCAAGATGATGAGTAGTCCGATTGAGAAGA 838
||||||||||||||| ||||||||||||| ||||| |||||||||| ||||| |||||||
Sbjct 796 GATCTAACAAGTTCATCAAGAGAAAGAGTCTCAAGTTGATGAGTAGCCCGATCGAGAAGA 855
Query 839 GGATTGAATTGAGCAGCCAAGAATTTATCGATTGA 873
|||||||||||||||||||||||||| | ||||||
Sbjct 856 GGATTGAATTGAGCAGCCAAGAATTTCTTGATTGA 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32328233616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5