BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14686.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920365 jgi|Araly1|920365|scaffold_101646.1 1447 0.0
> Ahg920365 jgi|Araly1|920365|scaffold_101646.1
Length=1072
Score = 1447 bits (783), Expect = 0.0
Identities = 949/1029 (92%), Gaps = 12/1029 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCTTTGGAAACGCGCCGCCGTAGTTCTCAAAGACGGACCTAGTCTCATCGCGGCT 60
|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 22 ATGAAGCTATGGAATCGCGCCGCCGTAGCTCTCAAAGACGGACCTAGTCTCATCGCTGCG 81
Query 61 GATGACATTCTCACAGCAGCCGTTGTGAAAGCTACAAGCCACGACGAGCTCTCCATTGAT 120
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 82 GATGACATTCTCACAGCAGCCGTCGTGAAAGCTACAAGCCACGATGAGCTCTCAATCGAT 141
Query 121 ACAGAGAGCGCTCAATTCATCTACCGTCACGTTCTCTCTAGCCCGTCAAGCCTCAAGCCT 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 142 ACAGAGAGCGCTCAATTCATCTACCGTCACGTTCTCTCTAGCCCGTCGAGCCTCAAGCAT 201
Query 181 CTCGTAAGCTTAATCTCGTCTCGCGTGAAACGCACGCGAAGCTGGGCGGTTGCTTTAAAA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 202 CTCGTAAGCTTAATCTCTTCTCGCGTGAAACGCACGCGAAGCTGGGCGGTTGCGTTAAAA 261
Query 241 GGCTTAATGCTAATGCACGGCTTCTTCCTCTGTAAATCAACCGTAGCAGAATCGATCGGA 300
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 262 GGCTTAATGCTAATGCACGGCTTCTTCCTCTGTAAAACAACCGTCGCCGAATCGATCGGA 321
Query 301 CGGTTACCTTTCGATCTTTCGAGTTTCGGCGAAGGTAATTCACGGATTATGAGCAAATCC 360
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 322 CGGTTACCGTTCGATCTTTCGAGTTTCGGCGAAGGTAGTTCACGGATTATGAGCAAATCC 381
Query 361 GGTGGGTTTAATCTCTTCGTACGTGCTTATTTCGCGTTTCTTGATCGAAGATCGATTCTG 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 382 GGTGGGTTTAATCTCTTCGTACGCGCTTATTTCGCGTTTCTTGATCGAAGATCGATTCTA 441
Query 421 TTTCACGATGGGAATCGTCATCGATACAACGAAGAATCATCGGTTCTGATTCGACTTGTG 480
|||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 442 TTTCACGACGGGAATCGTCATCGGTACAATGAAGAATCATCGGTTCTGATTAGACTTGTG 501
Query 481 ATTATTCGTAAGATGCAGATTATTGTTGATTCTTTGATTAGAATCAAACCGATTGGTGAA 540
||||| |||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 502 ATTATACGTAAGATGCAGATTATTGTGGATTCTTTGATTAGGATTAAGCCGATTGGTGAA 561
Query 541 AACATGA-TGATACCTGTGATTAATGAAGCTATGGAGAATGTGGTTAGTGAGATTATGGA 599
| ||||| | |||||| ||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 562 ACCATGAAT-ATACCTTTGATTAATGAAGCAATGGAGAATGTGATTAGTGAGATCATGGA 620
Query 600 GATTTACGGTTGGATTTGTCGTCGTATTGCTGAAGTTTTACCTAACGTGCACTCCAAGAT 659
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 621 GATTTACGGTTGGACTTGTCGTCGGATTGCTGAAGTTTTACCTAACGTGCATTCCAAGAT 680
Query 660 AGGTAAAACAGAGGCAGACTTGGCGTTGAAGATTGTTGCTAAATCCATGAAGCAAGGAGG 719
|| |||||||| |||||||||||||||||||||||| ||||||| | |||||||||| |
Sbjct 681 TGGGAAAACAGAAGCAGACTTGGCGTTGAAGATTGTTTCTAAATCTACGAAGCAAGGAAG 740
Query 720 AGAGCTAAAAAAGTATTTTGAGTTTTGTAAAGACTTGGGAGTTTCTAATGCTCAAGAGAT 779
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 741 AGAACTCAAAAAGTATTTTGAGTTTTGTAAAGATTTGGGAGTTTCTAATGCTCAAGAGAT 800
Query 780 TCCTAATTTCGTAAGGATTCCTGAAGCGGATGTGATTCATCTCGATGAACTCGTAAGGAC 839
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TCCTAATTTCGTGCGGATTCCTGAAGCGGATGTGATTCATCTCGATGAACTCGTAAGGAC 860
Query 840 ---GGCGATGGAGTCGTCTGAGGAAAGTGCGgagagaacagagattgctgaggaagaaga 896
|| ||| || |||| ||||||| ||| ||||||||| ||||||| || ||||||||
Sbjct 861 TTCGGAGATTGATTCGTGTGAGGAAGGTGTGGAGAGAACGGAGATTGTTGTTGAAGAAGA 920
Query 897 agaagaagagga-agagataga-gac-gaa--gCTTTCTGATTTGATAACACTTGATCAT 951
|||||||||| | ||||| || | | ||| | ||||||||||||||||||||||||||
Sbjct 921 AGAAGAAGAG-ATAGAGAC-GAAGCCTGAATTGGTTTCTGATTTGATAACACTTGATCAT 978
Query 952 AATGAGGAAGCTCCTGCCTCTCCTCCGAGAGTTGTTGTCGTTGATATTCCAGACTTAATT 1011
|||||||||||||||| |||||| ||||||| ||||| |||||||||||||| ||||||
Sbjct 979 GATGAGGAAGCTCCTGCTTCTCCTACGAGAGTAGTTGTTGTTGATATTCCAGATTTAATT 1038
Query 1012 AGCTTTTAA 1020
|||||||||
Sbjct 1039 AGCTTTTAA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5