BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14687.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471652 jgi|Araly1|471652|fgenesh2_kg.1__1606__AT1G14687.1 1155 0.0
> Ahg471652 jgi|Araly1|471652|fgenesh2_kg.1__1606__AT1G14687.1
Length=789
Score = 1155 bits (625), Expect = 0.0
Identities = 748/804 (93%), Gaps = 22/804 (3%)
Strand=Plus/Plus
Query 1 CAAAAAGTGGGTTTTTCACATTTATTATGACAACTAATAAACACGTAAGTACAAAATCTT 60
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1 CAAAAAGTGGGTTTTTCACATTTATTATGACAACTAATACACACATAAGTACAAAATCTT 60
Query 61 AAAGCAAGTAAGTAACAATAATTTTTGCTCTTTTTGTAACTCCCAACTCTTTCTGACACa 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 AAAGCAAGTAAGTAACAATAATTTTTACTTTTTTTGTAACTCCCAACTCTTTCTGACACA 120
Query 121 aaaaaaCAC--CATATCATAACTTAAGTaacccaaaaccaaactcttccaaaacaaaccc 178
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AAAAAACACATCATATCATAACTTAAGTAACTCAAAACCAAACTCTTCCAAAACAAACCC 180
Query 179 taaacgcaaaaatcattactcaaaaaaaaaCAAAGTCTCTCTCTTCTAATTAGAGAGCCA 238
||||| | ||| | | || |||| | |||||||||||||||||||||||||
Sbjct 181 TAAACTC--AAA--A--A-TC----AAAATC----TCTCTCTCTTCTAATTAGAGAGCCA 225
Query 239 AGAAGATGCAGAGTACTTGTGTCTACAGAGAATGCATGCGCAACCACGCCGCGAAGCTCG 298
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 226 AGAAGATGCAGAGTTCTTGTGTCTACAGAGAATGCATGCGCAACCACGCCGCGAAGCTAG 285
Query 299 GCTCTTACGCCATCGATGGCTGCCGTGAATACTCTCAACCATCCACCGGCGATCTCTGCG 358
|||| ||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 286 GCTCCTACGCTATCGATGGCTGCCGTGAATTCTCTCAATCAGCCACCGGCGATCTCTGCG 345
Query 359 TCGCCTGTGGTTGCCACCGCAGCTACCACCGTCGTATAGACGTCATATCTTCTCCTCAAA 418
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 346 TCGCCTGTGGTTGCCACCGCAGCTACCACCGTCGCGTCGACGTCATATCTTCTACTCAAG 405
Query 419 TCA-ATCACACGCGCTTCCCGTTCACGAGCTTAAGGCGCGTGAAGCAGCTGGCGAGGCTG 477
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 406 TCACA-CACACGCGCTTCCCGTTCACGAGCTTGAGGCGCGTGAAGCAGCTGGCGAGGCTG 464
Query 478 AAATGGAAAACGGCTGAGGAAAGAAATGAGGAGGAGGAGGATGACACGGAGGAGACTTCG 537
||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 465 AAATGGAAAACTGCTGAAGAAAGAAATGAGGAGGAGGAGGAGGACACAGAGGAGACTTCG 524
Query 538 ACGGAAGAGAAGATGACGGTGCAGAGGCGGAGGAAGTCAAAGTTCACGGCGGAGCAGAGA 597
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 525 ACGGAAGAGAAGATGACGGTGCAGCGACGGAGGAAGTCAAAGTTCACGGCGGAGCAAAGA 584
Query 598 GAGGCGATGAAAGATTACGCGGCGAAGTTGGGATGGACGTTGAAGGATAAGAGAGCGCTT 657
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GAGGCGATGAAAGAATACGCGGCGAAGTTGGGATGGACGTTGAAGGATAAGAGAGCGCTT 644
Query 658 AGAGAAGAGATAAGAGTCTTCTGTGAAGGGATTGGTGTTACTCGTTATCATTTTAAAACT 717
||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct 645 AGAGAAGAGATAAGAGTCTTCTGCGAAGGGATTGGTGTTTCTCGTTATCTTTTTAAAACT 704
Query 718 TGGGTTAACAATAATAAAAAGTTTTATCACTAACT-A--ATTAACTAATATCCTTAATTG 774
||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||
Sbjct 705 TGGGTTAACAATAATAAAAAGTTTTATCACTAACTTAGTATTAATTAATTTCCTTAATTG 764
Query 775 AGATAATACTATAATTTAGTTCCA 798
||||| ||||||||||||||||||
Sbjct 765 AGATAGTACTATAATTTAGTTCCA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5