BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14688.1

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920367 jgi|Araly1|920367|scaffold_101648.1                        448    3e-125


> Ahg920367 jgi|Araly1|920367|scaffold_101648.1
Length=509

 Score =  448 bits (242),  Expect = 3e-125
 Identities = 352/403 (87%), Gaps = 15/403 (4%)
 Strand=Plus/Plus

Query  123  AGATGGTGATCTTTTGGGTGTTGTTTTTGAGAATACGGTTATCTTTGGGCAGGCTCTTAA  182
            ||||| || || ||||||||||||||||||| |||||||  ||| |||||||||||||||
Sbjct  101  AGATGATGGTCCTTTGGGTGTTGTTTTTGAGGATACGGTGCTCTATGGGCAGGCTCTTAA  160

Query  183  -AGTTGGTACCTCTTTGACTTTTGTTGGTGAGGCTGTTAGAGACAAAGCTGGTAATCTCA  241
             | ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  161  TA-TTGGTACCTCCATGACTGTTGTTGGTGAGGCTGTTAGAGACAAAGCTGGTAATCTCA  219

Query  242  TGATTCAAAAATCCAAGGAACAGTCTTTAATAGTGTT-TAGTGAAGAGAGCTCCTTTGAT  300
            |||||||||||||||| |||||||||||||| ||||| | ||| ||||| ||||||||||
Sbjct  220  TGATTCAAAAATCCAAAGAACAGTCTTTAATGGTGTTCT-GTGGAGAGAACTCCTTTGAT  278

Query  301  GAGATGGTT-AATAACATGAAGTCACAGTCAGAGCTTTGTGTA-ATACT-CGCCAAGATC  357
             | ||||||  | |||||||||||| | |||||| ||| |  |  | || | ||||||||
Sbjct  279  AAAATGGTTGGA-AACATGAAGTCAAATTCAGAG-TTT-TACATTTTCTACTCCAAGATC  335

Query  358  TTCGGATCTATTGCTGTGGCTATAGCCGTCGTGTACGGTGTGGATTATGCAAGAAAGGTT  417
            |||||| || ||||||||||| | |||||||||||||||||||||| || ||||||||||
Sbjct  336  TTCGGAACTGTTGCTGTGGCTGTGGCCGTCGTGTACGGTGTGGATTTTGTAAGAAAGGTT  395

Query  418  TTGTTACCATTCGTGTGGAAGAAAAAGGACTTAGGTGACAGCA---GTTCACAGAATGGT  474
            |||||||||||||||||||||||||||||||||||| ||| ||   | ||| |||||| |
Sbjct  396  TTGTTACCATTCGTGTGGAAGAAAAAGGACTTAGGTAACAACAACAGATCAGAGAATGAT  455

Query  475  AGCTCAGACAGCGAAGATACCGACATCAGTGATTTCTAGGACT  517
            | ||||||||||||||||||  |||||||||||||||||||||
Sbjct  456  AACTCAGACAGCGAAGATAC--ACATCAGTGATTTCTAGGACT  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23483716872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5