BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14688.1 Length=641 Score E Sequences producing significant alignments: (Bits) Value Ahg920367 jgi|Araly1|920367|scaffold_101648.1 448 3e-125 > Ahg920367 jgi|Araly1|920367|scaffold_101648.1 Length=509 Score = 448 bits (242), Expect = 3e-125 Identities = 352/403 (87%), Gaps = 15/403 (4%) Strand=Plus/Plus Query 123 AGATGGTGATCTTTTGGGTGTTGTTTTTGAGAATACGGTTATCTTTGGGCAGGCTCTTAA 182 ||||| || || ||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 101 AGATGATGGTCCTTTGGGTGTTGTTTTTGAGGATACGGTGCTCTATGGGCAGGCTCTTAA 160 Query 183 -AGTTGGTACCTCTTTGACTTTTGTTGGTGAGGCTGTTAGAGACAAAGCTGGTAATCTCA 241 | |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 161 TA-TTGGTACCTCCATGACTGTTGTTGGTGAGGCTGTTAGAGACAAAGCTGGTAATCTCA 219 Query 242 TGATTCAAAAATCCAAGGAACAGTCTTTAATAGTGTT-TAGTGAAGAGAGCTCCTTTGAT 300 |||||||||||||||| |||||||||||||| ||||| | ||| ||||| |||||||||| Sbjct 220 TGATTCAAAAATCCAAAGAACAGTCTTTAATGGTGTTCT-GTGGAGAGAACTCCTTTGAT 278 Query 301 GAGATGGTT-AATAACATGAAGTCACAGTCAGAGCTTTGTGTA-ATACT-CGCCAAGATC 357 | |||||| | |||||||||||| | |||||| ||| | | | || | |||||||| Sbjct 279 AAAATGGTTGGA-AACATGAAGTCAAATTCAGAG-TTT-TACATTTTCTACTCCAAGATC 335 Query 358 TTCGGATCTATTGCTGTGGCTATAGCCGTCGTGTACGGTGTGGATTATGCAAGAAAGGTT 417 |||||| || ||||||||||| | |||||||||||||||||||||| || |||||||||| Sbjct 336 TTCGGAACTGTTGCTGTGGCTGTGGCCGTCGTGTACGGTGTGGATTTTGTAAGAAAGGTT 395 Query 418 TTGTTACCATTCGTGTGGAAGAAAAAGGACTTAGGTGACAGCA---GTTCACAGAATGGT 474 |||||||||||||||||||||||||||||||||||| ||| || | ||| |||||| | Sbjct 396 TTGTTACCATTCGTGTGGAAGAAAAAGGACTTAGGTAACAACAACAGATCAGAGAATGAT 455 Query 475 AGCTCAGACAGCGAAGATACCGACATCAGTGATTTCTAGGACT 517 | |||||||||||||||||| ||||||||||||||||||||| Sbjct 456 AACTCAGACAGCGAAGATAC--ACATCAGTGATTTCTAGGACT 496 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23483716872 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5