BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14700.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471656 jgi|Araly1|471656|fgenesh2_kg.1__1610__AT1G14700.1 1727 0.0
> Ahg471656 jgi|Araly1|471656|fgenesh2_kg.1__1610__AT1G14700.1
Length=1223
Score = 1727 bits (935), Expect = 0.0
Identities = 1144/1239 (92%), Gaps = 38/1239 (3%)
Strand=Plus/Plus
Query 30 CACAACAAAATCAACCATTCCTTTCCTTATCTTCTTCCTCTTTTG-----C--TTTTCTA 82
||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 CACAACAAAATTAACCATTCCTTTCCTTATCTTCTTCCTCTTTTGCTTTTCATTTTTCTA 60
Query 83 ATCTCTCAATGGCTACCTTAAAACACAAACCTGTAAATTTGGTATTTTACGTTTATAATT 142
|||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 ATCTCTCAATGGCTGCCTTAAAACATAAACCTGTAAATTTAATATTTTACGTTTATAATT 120
Query 143 TGATTATTATATTCTCCTCCCATAGTTCCACGGCGGAGCTCCGCAGGCTACTGCAGCCAT 202
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATTATTATATTCTCCACCCATAGTTCCACGGCGGAGCTCCGCAGGCTACTGCAGCCGG 180
Query 203 CAAAAACC-GATGGTACAGTGAGCTTTCTCGTTATCGGAGACTGGGGAAGAAGAGGCTCC 261
| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 181 C-GAAACCTGATGGTACAGTAAGCTTTCTCGTCATCGGAGACTGGGGAAGAAGAGGCTCC 239
Query 262 TATAATCAGTCCCAAGTAGCTCTTCAGATGGGAGAAATCGGAGAGAAATTAGATATCGAT 321
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 TATAACCAGTCCCAAGTAGCTCTTCAGATGGGAGAAATCGGAGAGAAATTAGACATCGAT 299
Query 322 TTTGTGATTTCTACTGGAGATAATTTTTACGACAATGGTTTAACCAGCTTGCACGATCCT 381
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 300 TTTGTAATTTCTACTGGAGATAATTTTTACGACAATGGGTTAGCCAGCTTGCACGATCCT 359
Query 382 CTATTTCAAGATTCTTTTACCAACATTTATACCGCTCCGAGCTTGCAGAAACCTTGGTAT 441
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CTATTTCAAGATTCTTTTATCAACATTTATACCACTCCGAGCTTGCAGAAACCTTGGTAT 419
Query 442 AGTGTTTTAGGAAATCATGATTATAGAGGTGACGTCAGGGCACAACTTAGCCCTATGCTC 501
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 420 AGTGTTTTAGGAAATCATGATTATAGAGGTGATGTCAGGGTACAACTTAGCCCTATGCTC 479
Query 502 AGAGCTCTGGACAACAGATGGGTTTGCATGAGATCTTTCATTGTAAATGCTGAGATCGTC 561
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGGCTTTGGACAACAGATGGGTTTGCATGAGATCTTTCATTGTAAATGCTGAGATCGTC 539
Query 562 GATTTGTTCTTCGTCGACACAACTCCGTTCGTCGATAAATACTTTATTCAACCAAATAAG 621
||||| || ||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||
Sbjct 540 GATTTTTTGTTCGTGGACACAACTCCATTCGTTGATAAATACTTTATCCAACCAAATGAG 599
Query 622 CATGTTTATGACTGGAGCGGTGTATTACCTAGGCAAACATATCTGAATAATCTCTTAAAG 681
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 600 CATGTTTATGACTGGAGCGGCGTATTACCTAGGCAGACATATCTGAACAATCTCTTAAAG 659
Query 682 GAACTCGACGTGGCGTTGAGAGAGTCAGTCGCAAAGTGGAAAATAGTGATTGGTCACCAT 741
||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 660 GAAGTCGACGTGGCATTGAGAGAGTCACTTGCAAAGTGGAAAATAGTGATTGGTCACCAT 719
Query 742 ACGATCAAAAGCGCAGGCCACCACGGGAACACCATTGAGTTGGAGAAACACCTTTTACCT 801
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 ACGATTAAAAGCGCAGGCCACCACGGGAACACCATTGAGTTGGAGAAGCACCTTTTACCT 779
Query 802 ATTCTCCAAGCAAATGAAGTGGATCTCTACGTAAACGGACATGATCATTGCTTAGAGCAC 861
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 780 ATTCTCCAAGCAAATGAAGTGGATCTCTACGTAAACGGGCATGATCATTGCTTGGAGCAC 839
Query 862 ATAAGCAGCGTGGACAGTAACATACAATTTATGACAAGTGGAGGTGGATCCAAGGCCTGG 921
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 840 ATAAGCAGCGTGGACAGTAACATTCAATTTATGACGAGTGGAGGTGGATCCAAGGCGTGG 899
Query 922 AAAGGAGGTGACGTGAACTACGTTG-AACCAGAAGA---GATGAGGTTTTACTACGACGG 977
||||||||||||||| ||||| ||| ||||| |||| ||||| |||||||||||||||
Sbjct 900 AAAGGAGGTGACGTGGACTAC-TTGGAACCACAAGATCAGATGAAGTTTTACTACGACGG 958
Query 978 ACAAGG-TTTCATGTCGGTTCACGTTTCAGAAGCTGAACTGCGTGTAGTCTTTTATGATG 1036
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACAAGGATTT-ATGTCGGTTCACGTTTCAGAAGCTGAACTGCGTGTAGTCTTTTATGATG 1017
Query 1037 TTTTTGGACACGTTCTGCATCATTGGAAGAAGACTTACAAGGAGGCGCTTTATTTCGCTT 1096
||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TTTTTGGGCACGTTTTGCATCATTGGAAGA---CTTACAAGGAGGCGCTTTATTTCGCTT 1074
Query 1097 CTTGATTCCAATTTAATCGGACGTAATTGTTTATGATCGATGTACTATGAAATTATCAAT 1156
||||||||||||||||||||||||||||||| || | | | || || || |||| |||
Sbjct 1075 CTTGATTCCAATTTAATCGGACGTAATTGTT-ATTA--G--G-AC-AT-AATTTATGAAT 1126
Query 1157 ATCGTACTT-CGTCGAATTTTCGAATCACAT--T-A-T----GATATGACAAGAACATAT 1207
|| | ||| ||| ||||||| ||||||||| | | | |||||||||||||| |||
Sbjct 1127 ATATT-CTTTCGTTGAATTTTGGAATCACATAATGAATTTATGATATGACAAGAACGTAT 1185
Query 1208 CAGCAGCATCAGaaaaaaaaGTCAATGAAATCTTTATTG 1246
|||||||||||||||| || |||||||||||||||||||
Sbjct 1186 CAGCAGCATCAGAAAACAA-GTCAATGAAATCTTTATTG 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5