BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14710.1
Length=2429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471658 jgi|Araly1|471658|fgenesh2_kg.1__1612__AT1G14710.1 2684 0.0
> Ahg471658 jgi|Araly1|471658|fgenesh2_kg.1__1612__AT1G14710.1
Length=2394
Score = 2684 bits (1453), Expect = 0.0
Identities = 1863/2044 (91%), Gaps = 95/2044 (5%)
Strand=Plus/Plus
Query 9 TTTACACAC-ACCTCTCTTTCCTCAAAAACCCTAGAtctctccctctctctctctctctc 67
||||||||| | | |||||||||||||||||||||| ||| ||||| | |||||||||
Sbjct 1 TTTACACACAAAC-CTCTTTCCTCAAAAACCCTAGA--TCT--CTCTC-C-CTCTCTCTC 53
Query 68 tctccatctctTGTC-TTTGCCTTTTACGAAGCTTCCCTTCCCTTAGTTTATACATTACT 126
||| |||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 54 TCT--ATCTCTTGTCTTTTGCCTTTTACGAAG-----CTTCCCTTAGTTTATACATTACT 106
Query 127 CTCAGCTCTC-TTTATTTCACTCAGCTTCACGTTGAAGACGAGTTTCTCTATTTGCCAGA 185
||||||| || ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 107 CTCAGCTTTCTTTTATTT-ACACAGCTTCACGTTGAAGACGAGTTTCTCTATTTGCCAGA 165
Query 186 TCTG-TTATCTTTCACATTTCTGATCTGTTTGAAGAAAGCTATGACTTGTGTTTGATAAA 244
|||| || ||||||||||||||||||||||||||| ||||||||| || ||| |
Sbjct 166 TCTGTTTGTCTTTCACATTTCTGATCTGTTTGAAGGAAGCTATGA--TG-ACTTG-T--- 218
Query 245 GAGAGAAGCaaaaaaaGGAACAGTTTTTATATAAAGATATTTGCTTTATTT-GTTTGTTC 303
| | ||||||||||||||||||||| |||||||| ||||||| ||| ||||||||
Sbjct 219 --G-TTTG-AAAAAAAGGAACAGTTTTTATCTAAAGATACTTGCTTT-TTTGGTTTGTTC 273
Query 304 TTAATTGTTGCCACGAAAATGGCAATGCCACCACCTGGAAATGTTACTACTCCGTCTGAG 363
|| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 274 TTGATTGTTGCCACGAAAATGGCAATG---CCACCGGGAAATGTTACTACTCCGTCTGAG 330
Query 364 AAATTGCAG-TT--TCCTCCTCCGGCAAATTGGATCCCAGACGAGCGAGATGGGTTTATC 420
||||||||| || ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 331 AAATTGCAGTTTCCTCCTCCTCCTGCTAATTGGATCCCAGACGAGCGAGATGGGTTTATC 390
Query 421 TCCTGGCTTCGTGCGGAGTTCGCTGCGGCTAACGCGATCATCGATTCGCTTTGTCAGCAT 480
|| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 391 TCGTGGCTGCGTGCGGAGTTTGCTGCGGCTAATGCGATCATCGATTCGCTATGTCAACAT 450
Query 481 CTACAAGCGGTTGGGGATCACAACGAGTACGAATCCGTGATCGGAAGCATTCATCATCGT 540
|||||||| |||||||||||||||| ||||| || |||||||||||||| ||||| |||
Sbjct 451 CTACAAGCAATTGGGGATCACAACGAATACGAGTCTGTGATCGGAAGCATCCATCACCGT 510
Query 541 CGCTTAGCCTGGTCTCAAGTGCTTACTATGCAGCAGTTTTTCCCAGTTGCAGATGTTTCT 600
|| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 511 CGTTTAGGCTGGTCTCAAGTTCTTACTATGCAGCAGTTTTTCCCAGTTGCAGATGTTTCT 570
Query 601 TACAATCTTCAGCAGATTGCTTGGAAAAGGCAACAGCAAATGCCACCTCAAAGGCATTAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TACAATCTTCAGCAGATTGCTTGGAAAAGGCAACAGCAAATGCCACCTCAAAGGCATTAC 630
Query 661 AATTCTGATCAAGTTGGGAAATTTGGAGCAAGGAGATCAGGGCCTGGGTTTAACAAGCAT 720
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 631 AATTCTGATCAAGTTGGGAAATTTGGAGGAAGGAGATCAGGGCCTGGGTTTAACAAGCAT 690
Query 721 CATGGTGGTGGTGGGGGTTACAGAGGAGCTGATTCGATGGCGAGAAATGGGCATAA-T-- 777
|| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 691 CA---TGGTGGT---GGTTACAGAGGAGCTGATTCAATGGCGAGAAATGGGCATAACTCC 744
Query 778 T--TC-AA-T-GG-----C-----GTTAACAGTGATCGTGTTGAGCATCGGGAGGAAGCT 822
| | || | || | |||| ||||||||||||||||| |||||||||||||
Sbjct 745 TACACGAATTCGGATTTCCATAGTGTTAGCAGTGATCGTGTTGAGCGTCGGGAGGAAGCT 804
Query 823 AAGTTGGCAAGTGATGTTAAGGCATTGTCTGTTGCAGAAGAGAAGAGAGATGGTAGCGAG 882
||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 805 AAGCTAGCAAGTGATGTTAAGGCATTGTCTGTTGCAGAAGAGAAGAGAGAGGGTAGTGAG 864
Query 883 AAACCGAGGAGTGATAGTAAAGTTGAGAAAAAATTGGAAGAATCTGAAACTCAAGAGGAG 942
||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 865 AAACCGAAGAGTGATAGTAAAGTCGGGAAAAAATTGGAAAAATCTGAAACTCAAGAGGAG 924
Query 943 ATAGTGAAGAACCATAAGTGTAACTCGGGTTCTAAAGATAACAGTCTCATTTCTGAGCAA 1002
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 925 ATAGT---GAACCATAAGTGTAACTCGGCTTCTAAAGATAACAGTCTCAGTTCTGAGCAA 981
Query 1003 AAGCAGGAGGAGAACGATAAAGAGTGTCCTGCAAGCATGGCAAAGACTTTTGTGGTTCAA 1062
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 982 AAGGAGGAGGGGAAAGATAAAGAGTGTCCTGCAAGCATGGCAAAGACTTTTGTGGTCCAA 1041
Query 1063 GAGATGTATGATGCAAAAATGGTTAATGTTGTCGAAGGATTGAAGCTATACGACAAAATG 1122
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 GAGATGTATGACGCGGAAATGGTTAATGTTGTCGAAGGATTGAAGCTATACGACAAAATG 1101
Query 1123 CTTGACGCAAACGAAGTTTCTCAACTCGTTTCTCTTGTAACCAATCTGAGACTTGCTGGA 1182
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1102 CTTGACGCAAAGGAAGTTTCTCAACTCGTTTCTCTTGTAAACAATCTGAGACTTGCTGGA 1161
Query 1183 AGAAGAGGTCAACTTCAAAGTGAGGCATATGTGGGTTATAAACGGCCAAATAGAGGACAT 1242
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1162 AGAAGAGATCAACTTCAAAGT---GCATATGTGGGTTATAAACGGCCAAATAGAGGACAC 1218
Query 1243 GGACGTGAGATGATCCAACTCGGTCTTCCTATAGCTGATACGCCGCCTGATGATGATAGT 1302
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1219 GGACGCGAGATGATCCAACTCGGTCTTCCCATAGCTGATACGCCGCCTGATGATGATA-- 1276
Query 1303 ATCAAAGATCGAAGAATAGAGCCAATCCCATCAGCTCTTTCAGACATCATTGAACGTTTG 1362
|| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1277 AT-----A--GAAGAATAGAGCCAATCCCATCAGCTCTTTCAAACATCATTGAACGTTTG 1329
Query 1363 GTCTCAAAGCAAATCATACCTGTGAAACCAGACGCATGCATCATTGATTTCTTCAGCGAG 1422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1330 GTCTCAAAGCAAATCATACCTGTGAAACCAGACGCTTGCATCATTGATTTCTTCAATGAG 1389
Query 1423 GGAGATCACTCGCAGCCTCATATGTTTGTTCCCTGGTTTGGACGACCCATCAGTGTCTTG 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GGAGATCACTCGCAGCCTCATATGTTTGTTCCCTGGTTTGGACGACCCATCAGTGTCTTG 1449
Query 1483 TCCTTGTCTGAATGTGATTATACATTTGGAAGAGTCATTGTCTCTGAAAATCCCGGCGAC 1542
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1450 TCCTTGTCTGAATGCGATTATACATTCGGAAGAGTCATTGTCTCTGACAATCCCGGCGAC 1509
Query 1543 TACAAAGGCTCTCTCAAGCTGTCTCTCACTCCCGGATCGGTTCTTTTGGTGGAAGGCAAA 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TACAAAGGCTCTCTCAAGCTGTCTCTCACTCCCGGATCGGTTCTTTTGGTGGAAGGCAAA 1569
Query 1603 TCCGCAAATCTTGCTAAGTATGCAATTCACGCAACCCGAAAGCAACGGATACTCATTAGC 1662
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1570 TCCGCAAATCTTGCTAAGTATGCAATTCACTCAACCCGAAAGCAACGGATACTCATCAGC 1629
Query 1663 TTCATCAAATCTAAACCGAGAAACTC--TAAC----T------GGGGACCACCGCCGAGC 1710
|||||||||||||||||||||||||| |||| | ||||||||||||| |||
Sbjct 1630 TTCATCAAATCTAAACCGAGAAACTCCATAACCGGATCTAACTGGGGACCACCGCCTAGC 1689
Query 1711 AGATCGCCAAATCAGCACATCCGTCACCCAACCGGCCCACCTAAACACTACCCTGTTGTT 1770
|||||||||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 1690 AGATCGCCAAATCA-CT--TCCGTCACCCAACTGGCCCACCTAAACACTACCCTGTT--- 1743
Query 1771 ATCCCGTCCACTGGTGTCTTGCCCACTCCGTCTCACCGCCCACCAAACGGAGCTGTTCAA 1830
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1744 ATCCCGTCCACCGGTGTCTTGCCCACCCCGTCTCACCGCCCACCAAACGGAGCTGCTCAG 1803
Query 1831 CCGATTTTCATCCCTCCTTCTCCTCCACTTGCCTCTCCAATGCCGTTCCCAGGTGGTGTA 1890
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1804 CCGATTTTCATCCCCCCTTCTCCTCCACTTGCCGCTCCAATGCCGTTCCCAGGTGGTGTA 1863
Query 1891 CCAACCGGGCCGCCTGTCTGGCCACTGCTGCCACCTCATCCACGACACCAGACAGCACCA 1950
||||||||||| | ||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 1864 CCAACCGGGCCAACGGTCTGGCCACTACTGCCACCTCATCCACGACACCAGCCTCCACCA 1923
Query 1951 CAACCTCGAATGCCCATCCCAGGCACTGGTGTGTTCCTCCCACCCGGTTCAAATCAAGAA 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1924 CAACCTCGAATGCCCATCCCAGGCACTGGTGTGTTCCTCCCACCCGGTTCAAACCAAGAA 1983
Query 2011 CTGG 2014
||||
Sbjct 1984 CTGG 1987
Score = 398 bits (215), Expect = 1e-109
Identities = 263/285 (92%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 2033 CAGAAGGAAAATTAGATTTGAAGGCGAAAGAAGAAGCTCGTAACGGATTTGGTGAAGGGG 2092
|||||||||| |||||| |||| | ||||||||||||||||||||| ||| || |||||
Sbjct 2042 CAGAAGGAAAGTTAGATGTGAAAACAAAAGAAGAAGCTCGTAACGGAATTGCTGGAGGGG 2101
Query 2093 AATGCGATGGCAGTAACGGTAAACAGAGCAATTAGTAGCTgaagaagagaagatagagca 2152
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2102 AATGCGATGGCAGCAACGGGAAACAGAGCAATTAGTATCTGAAGAAGAGAAGATAGAGCA 2161
Query 2153 aagagagagaa-TAGTTTTTGGGAGATGAAATCTGAGGTGCAGTTTACAAACTGTTAAAA 2211
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 2162 AAGAGAGA-AACTAGTTTTTGGGAGATGAAATCTGAGGTGCAGTTTATAAACTGTAAAAA 2220
Query 2212 GAGCGGTGAATTCGATG-AAATGTCGTTTTGTTTTTGCCACTTGAGAAATTATTTTTAGG 2270
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2221 GAGCGGCCAATTCGATGGAAATGTCGTTT-GTTTTTGCCACTTGAGAAATTATTTTTAGG 2279
Query 2271 AGAG--TCAAAA-CAAGGAAAAGTTACCCGTTTTCTACTCTCTTC 2312
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 2280 AGAGAGTCAAAAACAAGGAAAAGTTACCCGTTTTCTACTCTCTTC 2324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91530858735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5