BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14720.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471659 jgi|Araly1|471659|fgenesh2_kg.1__1613__AT1G14720.1 1779 0.0
> Ahg471659 jgi|Araly1|471659|fgenesh2_kg.1__1613__AT1G14720.1
Length=1196
Score = 1779 bits (963), Expect = 0.0
Identities = 1115/1188 (94%), Gaps = 12/1188 (1%)
Strand=Plus/Plus
Query 54 ctctctctctctTTCAATACAGCTCCAAAACTCGTCCTCAAGACGCTATTTATCCATTTA 113
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 18 CTCTCTCTCTCTTTCAACACAGCTCCAAAGCTCGTCCTCAAGACGCTATTTATCCATTTA 77
Query 114 AGTCTCTTCTCTTTTCGTCCTCATAATACTCTTATACACAGAAACGTTTTTCATTCATAA 173
| |||||||||||||||||||||||||| | |||||||||||||| ||| || ||||||
Sbjct 78 AATCTCTTCTCTTTTCGTCCTCATAATA--C-TATACACAGAAACG-TTTACACTCATAA 133
Query 174 CAAAAAATGGGTTTTATAACTCGATTTTTAGTTTTCATGTCACTCTTCACCAGTTTGGTT 233
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 134 C-AAAAATGGGTTTTATAACTCGATTTTTAGTTTTCATGTCACTCTTCACCGGTTTGGTT 192
Query 234 TCTGGATTTGCTCTACAAAAGCTTCCTCTTATACAGTTCGACGAAGGTTACACACAGCTC 293
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 193 TCTGGATTTGCTCTACAAAAGCTTCCTTTTATACAGTTCGACGAAGGTTACACACATCTC 252
Query 294 TTTGGTGACCAGAATCTTATTGTTCACAGAGATGGAAAATCTGTCCGGTTAACGCTTGAT 353
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 253 TTTGGTGACCAAAATCTGATTGTTCACAGAGATGGAAAATCTGTCCGGTTAACGCTCGAT 312
Query 354 GAAAGAACCGGTTCTGGATTTGTCTCAAATGATATTTACTTGCATGGCTTCTTCAGTTCC 413
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 313 GAGAGAACCGGTTCTGGATTTGTCTCAAATGACATTTACTTGCATGGCTTCTTCAGTTCT 372
Query 414 TCTATCAAATTGCCAGCAGATTACTCTGCAGGAGTTGTTATCGCCTTTTATTTATCAAAT 473
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 373 TCTATCAAATTACCAGCAGATTACTCTGCAGGAGTTGTTATCGCCTTTTATCTATCAAAT 432
Query 474 GGGGACTTATATGAGAAGAATCATGACGAGATTGATTTTGAGTTTTTGGGGAATATTAGA 533
|| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 433 GGAGACTTGTATGAGAAGAATCATGATGAGATAGATTTTGAGTTTTTGGGGAATATTAGA 492
Query 534 GGCAGAGAATGGAGGATTCAGACCAATATATACGGTAATGGAAGCACACACTTGGGCAGA 593
|||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||||
Sbjct 493 GGCAAAGAATGGAGGATTCAGACGAACATATACGGAAATGGAAGCACACATTTGGGCAGA 552
Query 594 GAAGAAAGATACAATCTTTGGTTTGATCCAACAGAGGATTTCCATCAATACAGTATCCTT 653
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 553 GAAGAAAGATATAATCTTTGGTTTGATCCAACAGAGGATTTTCATCAATACAGTATCCTC 612
Query 654 TGGTCTCTATCTCACATCATATTTTATGTAGACAATGTTCCGATCAGAGAAGTCAAACGT 713
|||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 613 TGGTCTCTTTCTCACATCATATTTTGTGTAGACAATGTTCCGATCAGGGAAGTCAAACGC 672
Query 714 ACGGCGTCGATGGGCGGTGACTTCCCGGCGAAGCCAATGTCTTTATATTCAACCATATGG 773
|||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 673 ACGGCGGCAATGGGCGGTGACTTCCCGGCGAAGCCAATGTCTTTATACGCAACCATATGG 732
Query 774 GATGGTTCCAAATGGGCGACTGATGGAGGCAAGTACGGTGTAAATTACAAATATGCCCCT 833
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GATGGCTCCAAATGGGCGACTGATGGAGGCAAGTACGGTGTAAATTACAAATATGCCCCT 792
Query 834 TACGTCTCTCAATTCACTGATCTGATCCTCCACGGCTGCGCCGTTGACCCCACCGAGAAG 893
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 793 TACGTCGCTCAATTCACTGATCTGATACTCCACGGCTGCGCCGTTGACCCCACCGAGAAG 852
Query 894 TTTCCGAGCTGCAAAGATGAAGCGGTT-CAGAATCTCCGGCTAGCATCGGAGATAACGGA 952
|||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 853 TTTCCGAGCTGCGAAGATGAAGCGGTCGC-GAATCTCCACCTAGCATCGGAGATAACGGA 911
Query 953 GTCTCAGAGGAACAAGATGGAGA-TTTTCCGACAGAAACACATGACTTATTCGTATTGTT 1011
||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||
Sbjct 912 GTCTCAGAGGAACAAGATGGAGAGTTTTCGG-CGGAAACACATGACTTATTCGTATTGTT 970
Query 1012 ACGATCATATGAGGTACAAGGTGGTTTTGTCGGAGTGTGTTGTGAATCCGGCTGAGGCTA 1071
|||||||||||||||||||| |||||||||| || ||||| ||||||||||| |||||||
Sbjct 971 ACGATCATATGAGGTACAAGCTGGTTTTGTCTGAATGTGTGGTGAATCCGGCCGAGGCTA 1030
Query 1072 AGCGTCTCAGGGTCTATGATCCGGTCACGTTCGGTGGGATTCCTCACGGCCACCGTCGTG 1131
| ||||||||||| |||||||| ||||||||||||||||| |||| ||| ||||||||||
Sbjct 1031 AACGTCTCAGGGTATATGATCCTGTCACGTTCGGTGGGATCCCTCGCGGTCACCGTCGTG 1090
Query 1132 GGAAGCATCGGAGCAGGAGCCGATTAGCTCG-AACTGAGTCGATATGAATCGGTGTATAT 1190
||||||| ||||||||| |||| ||||| || ||||||||| ||||||| ||||||||||
Sbjct 1091 GGAAGCACCGGAGCAGG-GCCGTTTAGC-CGGAACTGAGTCAATATGAACCGGTGTATAT 1148
Query 1191 TGTTCGGCTAGAGGGCATTTTTGGCATTTTCTGTCTTGTATAGGAATA 1238
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TGTTCAGCTAGAGGGCATTTTTGGCATTTTCTGTCTTGTATAGGAATA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5