BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14730.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471660 jgi|Araly1|471660|fgenesh2_kg.1__1614__AT1G14730.1 1592 0.0
> Ahg471660 jgi|Araly1|471660|fgenesh2_kg.1__1614__AT1G14730.1
Length=1017
Score = 1592 bits (862), Expect = 0.0
Identities = 973/1024 (95%), Gaps = 17/1024 (2%)
Strand=Plus/Plus
Query 1 CCGACAGAACAGGTGATACTCAATCTAGCACATtctcttctcttttgttctctgtatcgc 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CCGACAGAACAGGTGATACTCTATCTAGCACATTCTCTTCTCTTTTGTTCTCTGTCTCGC 60
Query 61 gctctctctctctctctTCATTGATTGAGTCATCATCTTCTTGGACAAGAAGTGGTCCGA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCTCTCTCTCTCTCTCTTCAGTGATTGAGTCATCATCTTCTTGGACAAGAAGTGGTTCGT 120
Query 121 ACCAAAACCAAGCCAGAGAATGAATCTCTCAGGGGATCGAACAAC-TCTAAAGCGTCACT 179
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 121 ACCAAAACCAAGCCAGAGAATGAATCTCTCGGGGGATCGAACAACTTC-AAAGCGTCACT 179
Query 180 CGTCGCTTTCAACACTTGTGGCTCATTTCTTTGGCATCTTAGCTGTTGTTCTGATGCTAA 239
|||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||| |
Sbjct 180 CGTCGCTTCCAACACTTGTGGCTCATTTCTTTGGCATTTTAGCCGTTGTTCTAATGCTCA 239
Query 240 TTTGGCTTCTCCACTACCGTGAAGGCATCGAGTATGGCTCCGACAACCCCCTTAAGGTTT 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTGGCTTCTCCATTACCGTGAAGGCATCGAGTATGGCTCCGACAACCCCCTTAAGGTTT 299
Query 300 TAAATGTGCACCCATTTCTCATGTACTGTGGATTTCTCTTCCTCGTGGGCCAAGCAATGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAATGTGCACCCATTTCTCATGTACTGTGGATTTCTCTTCCTCGTGGGCCAAGCAATGA 359
Query 360 TGACTTACAAAACGGCGTACGCGTCGCACCAAGTTCAGAAAATGGTTCACGGTGGGCTTC 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGACGTACAAAACGGCGTACGCGTCGCACCAAGTTCAGAAAATGGTTCACGGTGGGCTTC 419
Query 420 ACTTAATAGGCTTAGTTCTAGGTATTGTCGGAATCTGCGCCGCCTTTAGATTCCACGACA 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ACTTAATAGGCTTAGTTCTAGGTATTGTCGGAATTTGCGCCGCCTTTAGATTCCACGACA 479
Query 480 AAGTAAACCTAAAAGACATGGTCTCTCTTCACTCCTGGATCGGTCTCACCACTTTCATCC 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AATTAAACCTAAAAGACATGGTCTCTCTTCACTCCTGGATCGGTCTCACCACTTTCATCC 539
Query 540 TCCTCGGCGTCCAGTGGCTATTCGGTGCGTTCACATTCTTAGCGCCGCAATCATCGTCGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCTCGGCGTCCAGTGGCTATTCGGTGCGTTCACATTCTTAGCGCCGCAATCATCGTCGG 599
Query 600 GAACAAGGACGAGGATGATGCCGTGGCACGTCTTAGGTGGTCGGGCTCTACTTTATATGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACAAGGACGAGGATGATGCCGTGGCACGTCTTAGGTGGTCGGGCTCTACTTTATATGG 659
Query 660 GTATTGTCGCAGCACTGACCGGACTCATGCAGAGAGCTACGATGCTTGGTCAGAGCACAA 719
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GTATTGTGGCAGCACTGACCGGACTCATGGAGAGAGCTACGATGCTTGGTCAGAGCACAA 719
Query 720 ACGCTGAGTCACGTCTAATTAACTTCCTCGGGTTAGCCATTCTACTCTTTGGCGTTTCCG 779
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 720 ACGCTGAGTCACGTCTAATTAACTTCCTCGGCTTAGCCATTCTACTCTTCGGCGTTTCCG 779
Query 780 TCGACTTCTCCGTCGCCCTTGGCCGTTACAACTGACCGGAGTACTATATTAGTCTCACCT 839
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 780 TCGACTTCTCCGTCGCTCTTGGCCGTTACAACTGAC-GGAGTACTATATTAGTCCCACCT 838
Query 840 TTAAATCTTGCTTTATTATTTT-ATAATTCTACGAATTC-T-T--GTTTGTTTGTTTG-- 892
|||| |||| ||| || |||| |||||||||||||||| | | |||||||||||||
Sbjct 839 TTAA-TCTTTTTTTTTTTTTTTTATAATTCTACGAATTCGTGTTTGTTTGTTTGTTTGTT 897
Query 893 --CGTGTGTAGATGTAATTCGTGTGATATCTAATTGATCACGAGAGTGATTATTTGATAT 950
||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 898 TTCGTGTGTAGATGTGATTCGTGTGATATCTAATTGGTCGTGAGAGTGATTATTTGATAT 957
Query 951 TTAAATTTAATTTTGGATATTATTTATCTTCTTTTGTGTTTGATCTTTGATGCTTACTTA 1010
|||| |||| || ||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 958 TTAATTTTACTTC-GGATATT-TTT--CTTCTTTTGTGATTGATCTTTGATGCTTACTTA 1013
Query 1011 AAGT 1014
||||
Sbjct 1014 AAGT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5