BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14740.1
Length=2498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471661 jgi|Araly1|471661|fgenesh2_kg.1__1615__AT1G14740.1 3735 0.0
> Ahg471661 jgi|Araly1|471661|fgenesh2_kg.1__1615__AT1G14740.1
Length=2479
Score = 3735 bits (2022), Expect = 0.0
Identities = 2346/2496 (94%), Gaps = 48/2496 (2%)
Strand=Plus/Plus
Query 23 ctctatctctatctctcattctctctcATCCAACGCTATGATCGGAGAGAAAGATCTCGC 82
|||| ||||| |||||| ||||||||| | |||||| |||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTTTCTCTCTTTCTCTCTCTTTCAACGCCATGATCGGAGAGAAAGATCTCGC 60
Query 83 CGGAGATGGAGAGTGTTCTCGAACCAAAACATCAAAGCCTCGATTCTCTAATCTAAACAA 142
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGAGATGGAGAATGCTCTCGAACCAAAACATCAAAGCCTCGATTCTCTAATCTAAACAA 120
Query 143 CCAAACTCATCAAGACGACAAAACCGGTCAGTATCATCAGAAAGGCGTCGACTTTCTCAA 202
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAAACTTATCAAGATGACAAAACCGGTCAGTATCATCAGAAAGGCGTCGACTTTCTCAA 180
Query 203 CGTCCGGTCCAACAATCTCGATGGTGGGTTTTCTTCAAAATCATCACCCAGATCAGGAAA 262
|||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CGTCCGGTCCAATAATCCCGATGGTGGGTTCTCTTCAAAATCATCACCCAGATCAGGAAA 240
Query 263 CGAGCTCACTCTTAGCTATCTCTGTG--AA-----AAC--TCCGGTA-AACTCGCTGAAA 312
|||||||||||||||||||||||| | || ||| ||||| | || |||||||||
Sbjct 241 CGAGCTCACTCTTAGCTATCTCTGCGAAAACCGTGAACTTTCCGGCAGAA-TCGCTGAAA 299
Query 313 GTCTTGGTCAAAAGGGGAAAGAAGTAGTCACCTTTTCTGAGAATTCAAGCTACGATGATA 372
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 300 GTCTTGGTCAAAAGGGGAAAGAAGTAGTAACGTTTTCTGAGAATTCAAACTACGATGATA 359
Query 373 AATGGGTCGAGAGAGATTTCTTCAATTTGAGAGAAATGAATCCTAATTCTTCTAAACGTA 432
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 360 AATGGGTCGAGAGAGATTTCTTCAATTTGAGAGAAATGAATCCGAATTCTTCTAAACGAA 419
Query 433 AGGCTCACgaagaagaagaagaagct------gaagaagaagaagataagaaaagTAACA 486
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 420 AGGCTCACGAAGAGGAAGAAGAAGCTGAAGAAGAAGAAGAAGAAGATAAGAAAACCAACA 479
Query 487 AAATCGAAACCCTAAATCTCTCTTTAGCTTTACCTGATGTATCTCTGTCTTTAACGGCGT 546
||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 480 AAATCGAAACCCTAAATCTCTCTCTAGCTTTACCTGATGTTTCTCTGTCTTTGACGGCGT 539
Query 547 CAAACGCCGTGAAAAGGCCGAGAGTGGTGACGAGCGAGAGAACAACGACGTCGTTTTCAA 606
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 540 CAAACGCCGTGAAAAGGCCGAGA---GTGACGAGCGAGCGAACAACGACGTCGTTTTCAA 596
Query 607 ACGATTTCACGGCGACGGCGCCGTCGATGTCTTACTCTTACTCTCATCCTTTCTCTCACA 666
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 ACGATTTCACGGCGACGGCGCCGTCGATGTCTTACTCTTACTCTCACCCTTTCTCTCACA 656
Query 667 ACATTAGCTGCTCGATGACTCGAAACTCCACAGATTTCGATTGCTCCGTTGGTAAAGACG 726
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACATCAGCTGCTCCATGACTCGAAACTCCACAGATTTCGATTGCTCCGTTGGTAAAGACG 716
Query 727 ATCACATCTGGTGCGCCGGCGAAGGAACCAACGGATCTGTTCATAGCCGATTCAGACCAA 786
| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 ACCATATCTGGTGCGCCGGTGAAGGAACCAACGGATCTGTTCACAGCCGATTCAGACCAA 776
Query 787 TCGGTGACGGCGGCGTAGCGCTCGCGAACAATCCAGTTTCCGGTAAACCTTCAAGCTCTG 846
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 777 TCGGTGACGGCGGCGTTGCGCTCGCTAACAATCCAATTTCCGGTAAACCTTCAAGCTCTG 836
Query 847 CTGATTACTCTTTCTTTCCC-TCGGAGTTACCGGCTCGGCCGGGGAATGAAGTCACGATC 905
| |||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 837 CCGATTACTCTTTC-TTCCCTTCGGAGTTACCAGCTCGTCCGGGGAATGAAGTCACGATC 895
Query 906 TCCGGCGATTCGAGGAAGAAAGTAGCTAACTTGGAAGATAACGATGCGGTTAGATCGGAG 965
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 896 TCCGGCGATTCGAGGAAGAAAGTTCCTAACTTGGAAGATAACGACGCGGTTAGATCGGAG 955
Query 966 AGGGTGTTATACGACATCGTTTCGAAATCGATTTCTTCTGTGGCTTTGATTATTCAAGGG 1025
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGGGTTTTATACGACATCGTTTCGAAATCGATTTCTTCTGTGGCTTTGATTATTCAAGGG 1015
Query 1026 ATGGCTGATGAAACTCTAGAATCAGCTAAAGAGTATCTAAGGAACTTGATTGATTCACCG 1085
||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1016 ATGGCTGATGAAACTTTGGAATCAGCTAAAGAGTATTTGAGGAACTTGATTGATTCACCG 1075
Query 1086 GAGAAGAAGGAGAAGCTGGTGAATCTTCAGAACCAGATTGATAAAAGGTCTGATCTTAGT 1145
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1076 GAGAAGAAGGAGAAGCTGACGAATCTTCAGAACCAGATTGATAAAAGATCTGATCTTAGC 1135
Query 1146 AAGGAGACGTTATCGAAATGTGTTAAAGATCAGCTTGATATCTTGGTAGCTGTAAGAACA 1205
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAAGAGACGTTATCGAAATGTGTTAAAGATCAGCTTGATATCTTGGTAGCTGTAAGAACA 1195
Query 1206 GGGCTTAAGTATTTCCTCTCTGGTAAGATCAGAATCCCTATGAACGAATTGGTAGAGATC 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GGGCTTAAGTATTTCCTCTCTGGTAAGATCAGAATCCCTATGAACGAATTGGTAGAGATC 1255
Query 1266 TTTCTCTTCTTGAGATGTAGGAATGTGAATTGTAAGAGTCTCTTGCCTGTTGATGATTGT 1325
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 TTTCTGTTCTTGAGATGTAGGAATGTGAATTGTAAGAGTCTCTTGCCTGTTGATGACTGT 1315
Query 1326 GAATGCAAGATCTGTTCCAACAACAAAGGCTTTTGTAGCTCTTGTATGTGTCCTGTTTGT 1385
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GAATGCAAAATCTGTTCCAACAACAAAGGCTTTTGTAGCTCTTGTATGTGTCCTGTTTGT 1375
Query 1386 TTGAGATTTGATTCAGCTAGCAATACTTGTAGTTGGGTTGGTTGTGATGTGTGTTCGCAT 1445
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTGAGATTTGACTCTGCTAGCAATACTTGTAGTTGGGTTGGTTGTGATGTGTGTTCGCAT 1435
Query 1446 TGGTGTCATGCTGCTTGTGGGATTCAGAAGAATTTGATCAAACCGGGACATAGTTTGAAA 1505
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGGTGTCACGCTGCTTGTGGGATTCAGAAGAATTTGATCAAACCGGGACATAGTTTGAAA 1495
Query 1506 GGTCAGAGAGGTACTACTGAGATGATGTTTCATTGCATTGGATGTGCTCATAAGTCAGAG 1565
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1496 GGTCAGAGAGGTACTACTGAGATGATGTTCCATTGCATTGGATGTGCTCACAAATCAGAG 1555
Query 1566 ATGTTTGGATTCGTTAAGGATGTTTTTGTGTGTTGCGCTAAGAATTGGGGACTTGAGACT 1625
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1556 ATGTTTGGATTCGTTAAGGATGTTTTTGTGTGTTGCGCCAAGAATTGGGGACTTGAGACT 1615
Query 1626 TTGATCAAGGAGCTTGATTGTGTTAGAAAGGTTTTCCGAGGAAGTGATGATGCAAAAGGC 1685
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1616 TTGATCAAGGAGCTTGATTGTGTTAGAATGGTTTTCCGAGGAAGCGATGATGCAAAAGGC 1675
Query 1686 AAAGCATTGCATCTTAAAGCCAATGAAATGGTTAAGAAGCTAGAGAGTAAACAGATTTCC 1745
||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1676 AAAGCATTGTATCTCAAAGCCAATGAAATGGTTAAGAAGTTGGAGAGTAAACAGATTTCC 1735
Query 1746 CCTCTTGATGCTTCTAACTTCATCATTCAGTTCTTCAACTATGCTGAGTCAATACCAGAA 1805
|| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1736 CCGCTTGATGCTTCTAACTTCATCATTCAGTTCTTCAACTATGCGGAGTCAGTACCAGAA 1795
Query 1806 ATTCCCGACCCACCGAGAGAGCTAACCGTTGCAGCGGAAACGAGCTACAGAAAAGACGAG 1865
||||||||||| ||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct 1796 ATTCCCGACCCTCCGAGAGAGCTAATAGTTGCAGCAGAAACGAGCTACAGGAAGGACGAG 1855
Query 1866 GCATCTGTGACGCCTTCAACATCAAAGGATCAAAAGAAGAAGAGCTTTGCGTTAACAGAT 1925
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1856 GCATCTGTGACGCCTTCAACATCCAAGGATCAAAAGAAGAAGAGCTTTGCGTTAACTGAT 1915
Query 1926 GCAATGATGAACAGTTTTGATAGTTTAGAGAGCATGGTGAGAATCAAGGAGGCTGAAACA 1985
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1916 GCAATGATGAACAGTTTTGATAGTTTAGAAAGCATGGTGAGAATCAAGGAGGCTGAAACA 1975
Query 1986 AGAATGTTCCAGAAGAAAGCAGACGAGGCCAGAATAGAGGCAGAGAGTTTCAAGAGAATG 2045
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1976 AGAATGTTCCAGAAGAAAGCGGACGAGGCCAGAATAGAAGCAGAGAGTTTCAAGAGAATG 2035
Query 2046 ATAGAAATGAAGACGGAGAAGATGGAGGAGGAGTACACAGAGAAACTAGCGCGTCTGTGT 2105
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2036 ATAGAAATGAAGACGGAGAAGATGGAGGAGGAGTACACAGAGAAACTATCGCGTCTGTGT 2095
Query 2106 CTGCAGGAGACGGAGGAGAGAAGGAGGAATAAGCTGGAGGAGCTCAAGAAGCTTGAGAAT 2165
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 CTGCAGGAGACAGAGGAGAGAAGGAGGAATAAGCTGGAGGAGCTCAAGAAGCTTGAGAAT 2155
Query 2166 TCGCACTGCGATTACAGGAACATGAAGCTGAGAATGGAGGCTGAGATTGCTGGATTGTTG 2225
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2156 TCGCACTGCGATTACAGGAACATGAAGCTGAGAATGGAGGCTGAGATTGCAGGATTGTTG 2215
Query 2226 AAGAGAATGGAAGTTACAAGACAACAATTGGTATGAAGGAATCCGAAAAACAGAGCCTTT 2285
||||||||||||||||||||||||||||| ||||||| || || |||||||||||||| |
Sbjct 2216 AAGAGAATGGAAGTTACAAGACAACAATTAGTATGAATGATTCTGAAAAACAGAGCCTCT 2275
Query 2286 CAATTATCCATTTCTCTGCACTCTGCTCCTTGTTTCGTT-TTGTGGGAAATA-CAAAATT 2343
|| ||||||||| || |||||||||||||| || |||||||||||| |||| ||
Sbjct 2276 CA-TTATCCATT-----GC--TCTGCTCCTTGTTT--TTGTTGTGGGAAATATCAAA-TT 2324
Query 2344 AGTGATAAGTGTTTTATATGTTTCTCTGGAAATTGTCTTCTAAAT---C--tttttttt- 2397
||||| || |||||||| ||||||||||| | ||||||||||||| | ||||||||
Sbjct 2325 AGTGACAACTGTTTTATTTGTTTCTCTGGTA-TTGTCTTCTAAATTTTCAATTTTTTTTT 2383
Query 2398 --aatctataacttccg-ttttt---gattatatttataactatatatattttatatgat 2451
|||||||||||||| ||||| | ||||||||| || |||| ||||||||||||||
Sbjct 2384 TTAATCTATAACTTCCTCTTTTTTTTGCTTATATTTACAAATATACATATTTTATATGAT 2443
Query 2452 tatataatacatgtattttgtataAAGTAAATCATT 2487
||||||||| |||||||||||||| |||||||||||
Sbjct 2444 TATATAATATATGTATTTTGTATAGAGTAAATCATT 2479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94159085640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5