BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14750.1
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471662 jgi|Araly1|471662|fgenesh2_kg.1__1616__AT1G14750.1 3048 0.0
> Ahg471662 jgi|Araly1|471662|fgenesh2_kg.1__1616__AT1G14750.1
Length=1981
Score = 3048 bits (1650), Expect = 0.0
Identities = 1891/2003 (94%), Gaps = 33/2003 (2%)
Strand=Plus/Plus
Query 1 ACTGCATCAGCCCACTCTCTAGTCTCTGACTAACGAACTTCCATTTTCAAAATTCGAATT 60
||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
Sbjct 1 ACTGCATCAGCCCACTCTCTAGTCTCTAACTAACGAACTTCCAATTTC-AAATTCGAAAT 59
Query 61 TCTAATTTCTAGTTTCAAGCTTTCGTACGGAGAAAAAATGAAGGAGATCGCGATGAGGAA 120
||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTAAATTCTACTTTTAAGCATTCGTACGGAGAAAAAATGAAGGAGATCGCGATGAGGAA 119
Query 121 TTCAAAGCGCAAGCCTGAGCCGACGCCGTTCGCCGGGAAGAAGCTCCGGTCGACGCGATT 180
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 TTCGAAGCGCAAGCCTGAGCCGACGCCGTTCGCCGGAAAGAAGCTCCGGTCGACGCGATT 179
Query 181 ACGCCGGAAGAGAGCACAGATCTCTCCCGTTCTTGTTCAATCACCTCTCTGGAGCAAACA 240
||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||| ||
Sbjct 180 ACGCCGGAAGAGAGCTCAGATCTCTCCAGTTGTTGTTCAGTCACCTCTCTGGAGCAAGCA 239
Query 241 AATCGGAGTCTCTGCTGCTTCTGTCGATTCCTGCTCCGATTTG-----C-TAGCTGATGA 294
||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 240 AATTGGAGTCTCTGCTGCTTCTGTTGATTCCTGCTCCGATTTGCTCTTCGTAGCTGATGA 299
Query 295 CAACGTTTCCTGTGGTTCGAGCAGAGTCGAGAAGAGCTCGAATCCGAAGAAGACTCTAAT 354
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 CAACGTCTCCTGTGGTTCGAGCAGAGTCGAGAAGAGCTCGAATCCGAAGAAGAGTCTAAT 359
Query 355 TGAAGAGGTAGAAGTTTCTAAACCTGGTTATAATGTGAAGGAGACGATTGGTGATTCGAA 414
|||||||||||||||||||||||||||| |||||||||||||| ||| || ||||| ||
Sbjct 360 TGAAGAGGTAGAAGTTTCTAAACCTGGTAATAATGTGAAGGAGGTGATAGGCGATTCCAA 419
Query 415 ATTTCGAAGGATTACGAGGTCTTACTCTAAGCTACACAAGGAGAAGGAGGGAGATGAGAT 474
||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 420 ATTCCGGAGGATTACGAGGTCTTACTCTAAGCTATACAAGGAGAAGGAAGGAGATGAGAT 479
Query 475 CGAAGTAAGCGAATCGTCTTGTGTTGATTCGAATTCTGGTGCTGGATTAAGGAGATTGAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGAAGTAAGCGAATCGTCTTGTGTTGATTCGAATTCTGGTGCTGGATTAAGGAGATTGAA 539
Query 535 TGTGAAGGGAAATAAAATTAACGACAACGATGAGATCTCTTTCTCACGATCCGATGTGAC 594
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 TGTGAAGGGAAACGAAATTAACGACAACGATGAAATCTCTTTCTCACGATCCGATGTGAC 599
Query 595 CTTCGCCGGACATGTCTCCAACAGCCGGAGTTTGAATTTCGAATCGGAGAATAAGGAGAG 654
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 TTTCGCCGGACATGTCTCCAACAGCCGGAGTTTGAATTTCGGATCGGAGAATAAGGAGAG 659
Query 655 CGACGTCGTTTCTGTCATATCTGGAGTTGAGTACTGTTCCAAGTTCGGGAGCGTTACCGG 714
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 CGACGTCGTTTCAGTCATATCTGGAGTTGAGTGCTGTTCCAAGTTCGGGAGCGTTACCGG 719
Query 715 AGGAGCTGATAACGAAGAAATTGAAATCTCCAAGCCGAGCAGCTTCGTGGAAGCTGATTC 774
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 720 AGGAGCTGAGAACGAAGAAATTGAAATCTCCAAACCAAGCAGCTTCGTGGAAGCTGATTC 779
Query 775 CTCTCTTGGATCGGCCAAGGAATTGAAGCCGGAGCTTGAGATAGTCGGATGCGTCTCTGA 834
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCTCTTGGATCAGCCAAGGAATTGAAGCCGGAGCTTGAGATAGTCGGATGCGTCTCTGA 839
Query 835 TCTCGCTTGCTCTGAGAAATTCTC-G--GAAGAGGTTTCGGATTCTCTCGATGATGAGTC 891
|||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 840 TCTCGCTTGCACTGAGAAATTCTCTGACGAAGAGGTTTCGGATTCTTTCGATGATGAGTT 899
Query 892 ATCTGAGCAACGTTCAGAGATATATTCACAGTATTCCGACTTCGATTACTCGGATTACAC 951
||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 900 ATCTGAGCAGCGTTCCGAGATTTTTTCACAGTATTCCGACTTCGATTACTCGGATTACAC 959
Query 952 TCCGTCCATCTTCTTCGACTCTGGCAGCGAATTCTCTGAGAAATCTTCCTCTGATTCTCC 1011
|||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 TCCGTCGATTTTTTTCGACTCTGGTAGCGAATTCTCTGAGAAATCTTCCTCTGATTCTCC 1019
Query 1012 TATTTCACATTCTCGCTCTCTGTACCTCCAGTTCAAGGAACAGTTCTGTAGATCCACGAT 1071
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1020 AATTTCACATTCTCGCTCTCTGTATCTCGAGTTCAAGGAACAGTTCTGTAGATCCACAAT 1079
Query 1072 TCCCAACGATTTTGGATCTTCTTGCGAGGAAGAAATTCACTCTGAATTGCTAAGGTTTGA 1131
||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 TCCGAACGATTTGGGATCTTCTTGCCAGGAAGAAATTCACTCTGAATTGCTAAGGTTTGA 1139
Query 1132 TGATGAGGAGGTGGAAGAGAGCTATCTAAGGCTGAGGGAAAGAGAAAGAAGTCATGCATA 1191
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 TGATGAGGAGGTGGAAGAGAGCTATCTAAGGCTGAGGGAAAGAGAGAGAAGTCATGCATA 1199
Query 1192 TATGCGGGACTGTGCTAAGGCATACTGCTCCAGGATGGACAATACTGGTCTCATCCCTCG 1251
||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||
Sbjct 1200 TATGCGGGACTGTGCTAAGGCTTACTGCTCCATGATGGACTGTACTGATCTCATCCCTCG 1259
Query 1252 TCTACGCTCCATCATGGTTCAATGGATTGTAAAGCAATGTTCTGACATGGGGCTTCAGCA 1311
| ||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 1260 TTTACGCTCTATCATGGTTCAGTGGATTGTGAAGCAATGTTCTGACATGGAGCTTCAGCA 1319
Query 1312 AGAGACATTGTTTCTAGGAGTTGGTCTGTTGGATCGATTCCTGAGCAAAGGATCATTCAA 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGAGACATTGTTTCTAGGAGTTGGTCTGTTGGATCGATTCCTGAGCAAAGGATCATTCAA 1379
Query 1372 AAGCGAAAGGACTCTAATACTAGTCGGGATTGCGAGTCTTACTCTGGCCACCAGAATTGA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGCGAAAGGACTCTAATACTAGTCGGGATTGCGAGTCTTACTCTGGCCACCAGAATTGA 1439
Query 1432 AGAAAATCAACCTTACAACAGCATCCGGAAAAGGAACTTCACCATTCAGAACCTAAGATA 1491
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1440 AGAAAATCAACCTTACAACAGCATCCGGAAAAGGAACTTCACCATTCAGAAACTAAGATA 1499
Query 1492 TAGCCGGCATGAAGTGGTGGCAATGGAGTGGCTGGTTCAAGAAGTCCTCAACTTCAAATG 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TAGCCGGCATGAAGTGGTGGCAATGGAGTGGCTGGTTCAAGAAGTCCTCAACTTCAAATG 1559
Query 1552 CTTCACACCCACAATCTTCAACTTCTTGTGGTTCTACTTAAAAGCTGCTCGAGCCAATCC 1611
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1560 CTTCACACCCACTATCTTCAACTTCTTGTGGTTCTACTTAAAAGCTGCTGGAGCCAATCC 1619
Query 1612 AGAAGTTGAAAGGAAAGCCAAATCCTTGGCTGTTACCTCACTATCCGACCAAACTCAACT 1671
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1620 AGAAGTTGAAAGGAAAGCCAAATCCTTGGCTGTTACCTCGCTATCCGACCACACTCAACT 1679
Query 1672 CTGTTTTTGGCCCTCAACTGTAGCAGCTGCACTCGTGGTTCTCGCCTGCATCGAACACAA 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CTGTTTTTGGCCCTCAACTGTAGCAGCTGCACTCGTGGTTCTCGCCTGCATCGAACACAA 1739
Query 1732 CAAAATCTCTGCATACCAACGAGTCATAAAGGTCCATGTTAGAACAACAGATAACGAGTT 1791
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 CAAAATCTCTGCCTACCAACGAGTCATAAAGGTCCATGTTAGAACAACAGATAACGAGTT 1799
Query 1792 GCCTGAATGCGTTAAGAGTCTGGACTGGTTGCTTGGGCAGTAAGCAATCAAAAAGAA-CA 1850
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1800 GCCTGAATGCGTCAAGAGTCTGGACTGGTTGCTTGGGCAGTAAGCAATCAAAAAGAATCA 1859
Query 1851 AAAACCCTAAAACCAGGACACAGTATACTCCGATACCAACACACAGGTTATCATTACTAT 1910
||| ||||||||| |||||||||||||||||||||| |||||||| | | || |
Sbjct 1860 AAAGCCCTAAAACAAGGACACAGTATACTCCGATACGAACACACA----A--A--AC-A- 1909
Query 1911 TTACAAAAACAAACACAAGGTAAGTAATAAGAACT-CCTCTACAGATTTATATACTTAAT 1969
| | || || | ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1910 --A-A----CA--CA-A-GGTAAGTAATAAGAAATTCCTCTACAGATTTATATACTTAAT 1958
Query 1970 CGAGCTGGACTTAATTAGCTCTT 1992
|||||||||||||||||||||||
Sbjct 1959 CGAGCTGGACTTAATTAGCTCTT 1981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79037258375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5