BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14755.1

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471664 jgi|Araly1|471664|fgenesh2_kg.1__1618__AT1G14755.1         453    5e-127


> Ahg471664 jgi|Araly1|471664|fgenesh2_kg.1__1618__AT1G14755.1
Length=460

 Score =  453 bits (245),  Expect = 5e-127
 Identities = 275/290 (95%), Gaps = 0/290 (0%)
 Strand=Plus/Plus

Query  5    aaaaaaaaaaCATAAAACCATGAGAAACCTCATAAATTTCGCTGTTCTTATCATGACCAT  64
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct  1    AAAAAAAAAACATAAAACCATGAGAAACCTCGTAAATTTCGCTGTTCTTTTCATGGCCAT  60

Query  65   CTTCATCGTTTCAGCCTCAGGTGCGAGAGAGACGAGAATGATGGAACAAACTTGCCCCGT  124
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTTCATAGTTTCAGCCTCAGGTGCGAGAGAGACGAGAATGATGGAACAAACTTGCCCCGT  120

Query  125  TTTCTGGCCAATGGTTCCATGCGATGCTAACAAATGCGAACAAATGTGTCGCGATTATTA  184
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  121  TTTCTGGCCAATGGTTCCATGCGATGCTAAAAAATGCGACCAAATGTGTCGCGATTATTA  180

Query  185  CGGTTCTGTTCCCTCTTACTGTAATAGAATCGGAACTCCAATTGCTGAATGCGCCTGTAG  244
            |||| ||||||||||||||||||||||||||||| ||||||  |||||||| || |||||
Sbjct  181  CGGTCCTGTTCCCTCTTACTGTAATAGAATCGGAGCTCCAAACGCTGAATGTGCATGTAG  240

Query  245  TCTTACACCATGTTAATGACCCAAAGGCTTTTTCAAGGATATTTTAAGCT  294
            |||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct  241  TCTTACACCATGTTAATGACGCAAAGGCTTTCTCAAGGATATATTAAGCT  290



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18314682720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5