BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G14760.1

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312475 jgi|Araly1|312475|fgenesh1_pm.C_scaffold_1001255           468    2e-131


> Ahg312475 jgi|Araly1|312475|fgenesh1_pm.C_scaffold_1001255
Length=438

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 286/301 (95%), Gaps = 5/301 (2%)
 Strand=Plus/Plus

Query  1    ATGGATGTGAAGAAAGATGAGAACAGTAT-CTTAGAAAACATGAAACAAGAGATTAATCA  59
            ||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct  1    ATGGATGTGAAGATAGATGAGAACAGT-TCCTTAGAAAACATGAAACAAGAGATCAATCA  59

Query  60   TAGTCTAAaagaagaagcacaagaag---aagaagagattctaaagaagagaaTCTCAAG  116
             | | |||||||||||||| ||||||   |||||||||||||||||||||||||||||||
Sbjct  60   GAATATAAAAGAAGAAGCAGAAGAAGAAAAAGAAGAGATTCTAAAGAAGAGAATCTCAAG  119

Query  117  CCACCCTTTGTATGGGCTTCTTCTTCACTCACATCTCAATTGTTTAAAGGTGTGTTCCGG  176
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CCACCCTCTGTATGGGCTTCTTCTTCACTCACATCTCAATTGTTTAAAGGTGTGTTCCGG  179

Query  177  CGACTTTGACTCACCGGAGATCATGAACACGGCTGATGATCTTGCCCTATCCAAACTCTC  236
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  180  CGACTTTGACTCACCGGAGATCATGAACACGGCTGATGATCTTGCCATATCCAAACTCTC  239

Query  237  TCTCCACCCTGACTCTTCCTCCGAAGCTACCTCTTCAGAACTTGATCAATTCATGGTTCt  296
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TCTTCACCCTGATTCTTCCTCCGAAGCTACCTCTTCAGAACTTGATCAATTCATGGTTCT  299

Query  297  t  297
            |
Sbjct  300  T  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15453013545


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5