BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14770.1
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471666 jgi|Araly1|471666|fgenesh2_kg.1__1620__AT1G14770.1 893 0.0
> Ahg471666 jgi|Araly1|471666|fgenesh2_kg.1__1620__AT1G14770.1
Length=1242
Score = 893 bits (483), Expect = 0.0
Identities = 588/639 (92%), Gaps = 6/639 (1%)
Strand=Plus/Plus
Query 152 ATGGATGACCATGGTGGTTCTGATTTGAGCCTCGAGGATCTCATGGATGAGTATTCTTCT 211
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 1 ATGGATGACCATGGTGGTTCTGATTTGAGCATTGAGGATCTGATGGATGAGTATTCTTCT 60
Query 212 CGACCCGCACAAATAGCTGAATGGTTATGGTGTATTGAATATGTAGCCAAATTTGTCAAG 271
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CGACCCACACAAATAGCTGAATGGTTATGGTGTATTGAATATGTAGCCAAATTTGTGAAG 120
Query 272 GATCTAAGCTGCTTACTCGATTTGATGAACATTGGTTATCAGTACTCTGATGACTATGGG 331
||| |||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 121 GATATAAGCTGCTTACTCGATTTGATGAACATGGGTTATCAATACTCTAATGACTATGGG 180
Query 332 AAGA-GGATTAATGAAGTCCTGTCTCTTAGAGTCTTGGAGTTCATGTTTGATCCAAGCAT 390
| || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 A-GAAGGATCAATGAAGTCCTGTCTCTTAGAGTCTTGGAGTTCATGTTTGATCCAACCAA 239
Query 391 G-AGCGATGCTAACGGTGTTGGTGTTGCTTCTGCTTTAGAGGAAAAAGTGGAGTTTGATT 449
| | ||||||||||||||||||||||||||| ||| ||||| || ||| ||||||||||
Sbjct 240 GTAT-GATGCTAACGGTGTTGGTGTTGCTTCTACTTCAGAGGCAAGAGTTGAGTTTGATT 298
Query 450 TATCTTTGAGTAACGCTGATGTTCTCAGAGGAATTCTGAAAGAGATTCCAGTAGCAGAAC 509
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 299 TATCTTTGAGTAACACTGATGTTCTCAGAGCAATTCTGAAAGAGATTCCAGTATCAGAAC 358
Query 510 TACGAGTGGGCATGCCAGAGCTATCAAAGTTCAATGTTCTACCATTTATTGCTCACAAGA 569
| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 359 TGCGAGCGGGCATGCCAGAGCTATCAAAGTTTAATGTTCTTCCATTTATTGCTCACAAGA 418
Query 570 ACTTGTGTTTGCCACAATGTGCACTAGAGAAGCTGAGAGATGTGAGTTTAATGGAGAATC 629
|| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 419 ACATGTGTTTGCCACAATGCGCACTGGAGATGCTGAGAGATGTGAGTTTAATGGAGAATC 478
Query 630 AGACTAGTGCAACTCCTTTCATGGAAACAAATGACCCTGTTTTTAGAGATGATAGATCAG 689
||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 AGACTAGTGCAGCTCCTTCCATGGAAACAAATGACCCTGTTTTTAGAGATGTTAGATCAG 538
Query 690 TGCACATGGATTTATGCGAGGAGGAGCCGGTAGATGAACAGCAATTACATATTGGTAACG 749
||||||||||| ||||||||||| | |||||| ||| || | | |||||||||||||||
Sbjct 539 TGCACATGGATACATGCGAGGAGGTGACGGTAGGTGAGCAACGAGTACATATTGGTAACG 598
Query 750 CGAAGGAACCCACTG-ATGAGCAACATGTGCATATTGGT 787
|||| |||||| || ||||||| || ||||||||||||
Sbjct 599 AGAAGAAACCCA-TGGATGAGCAGCAAGTGCATATTGGT 636
Score = 863 bits (467), Expect = 0.0
Identities = 617/686 (90%), Gaps = 23/686 (3%)
Strand=Plus/Plus
Query 766 TGAGCAAC-ATGTGCATATTGGTAACGAGAAGGAATCCATTGATGAGCAACAAGTGCATA 824
|||||||| | || |||||||||||||||||| || |||| |||||||| ||||||||||
Sbjct 573 TGAGCAACGA-GTACATATTGGTAACGAGAAGAAACCCATGGATGAGCAGCAAGTGCATA 631
Query 825 TTGGTTTGGAACTAAACAGAAACGAGAAGGATAAAGTAATTGCCATCGACGATGAAGATG 884
|||||||||||| ||||| ||| |||||||||||||||||||| |||||||| |||||||
Sbjct 632 TTGGTTTGGAACAAAACATAAAAGAGAAGGATAAAGTAATTGCTATCGACGACGAAGATG 691
Query 885 AGCCAATGCACACCAATGAAAAAGGTGAAGTAGTTGTGATTAATGACGATACTGAGAGTG 944
||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 692 AGCCAATGCACACTAATGATAAAGGTGAAGTAATTGTGATCGATGACGATACTGAGAGTG 751
Query 945 ATCAAGGCACAACCAGTGATGGGACCTTTTCTCCAAGGCACAACGGTAATACTACCGATG 1004
|||||| ||||||| | | | ||| | | | |||||||||||||||| ||||
Sbjct 752 ATCAAGACACAACC---GCT-GAACC-CAT-T---A---ACAACGGTAATACTACTGATG 799
Query 1005 AGACCACCTTTTCTCCAAGCTCTAGAAGATCTCCAGAGGATGCACATGTAAAATGTACAA 1064
|| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 800 AG---ACCTTTTCTCCAAGCTCTAGAAGATCTCCAAAGGATGCACGTGTAAAATGTACAA 856
Query 1065 AAGATGGAACCTGGTTAATCAGTGGGAGCGATGATGAGTCAG--A----TAAAGATCCAC 1118
| |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 857 ACGATGGAACCTGGTTAATCAGTGGGAGCGATGATGAGTCAGATATGGTTAAAGATCCAG 916
Query 1119 CCTCGATCAAGAAAAATCCAAACACTTACTTGAACCTTCTTCCTTCGAGCTCCCGAACAA 1178
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 917 CCTCGATCAAGAAAAATCCAAACACTGACTTGAACCTTCTTCCTTCGAGCTCCCCAACAA 976
Query 1179 GACCGGAGAATGTATGCTGGAAGTGTGAGAAAGAAGGAACGTTATTGATTTGTAGCAGAA 1238
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 977 GACCGGAGAATGTATGCTGGAAATGTGAGAAAGAAGGAACATTATTGATATGTAGCAAAA 1036
Query 1239 GCGAGTGTGCAGCAAAAGTTCACAAGGAGTGTTTGAATTGTCCGGTTAACGTTGATGAAT 1298
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1037 GCGAGTGTGCAACAAAAGTTCACAAGGAATGTTTGAATTGTCCGGTTAACGTTGATGAAG 1096
Query 1299 ACGGGAACTTTCTCTGCCCTCTGTGCTGGTATGACCGACTCGCAATGGAGTATCATGAAT 1358
| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1097 ATGGGAACTTTCTCTGCCCTCTGTGCTGGTATGACCGAGTCGCCATGGAGTACCATGAAT 1156
Query 1359 CTCAGAAGTTGATTAGCTGCGCAAAGAGAAGATTGGTGAAGTGTTTCCCGGTGCTTTCCA 1418
| ||| ||||||| || |||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1157 CGAAGAGGTTGATTGGCGGCGCCAAGAGAAGATTGGTGAAGTGTTTCCCGGTACTTTCAA 1216
Query 1419 TAAGAAGCAAGAGACTCAAGTGATGA 1444
||||||||||||||||||||||||||
Sbjct 1217 TAAGAAGCAAGAGACTCAAGTGATGA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63077445720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5