BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14780.1
Length=2193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471668 jgi|Araly1|471668|fgenesh2_kg.1__1622__AT1G14780.1 3280 0.0
Ahg355629 jgi|Araly1|355629|fgenesh1_pg.C_scaffold_7002802 758 0.0
> Ahg471668 jgi|Araly1|471668|fgenesh2_kg.1__1622__AT1G14780.1
Length=2135
Score = 3280 bits (1776), Expect = 0.0
Identities = 1991/2096 (95%), Gaps = 10/2096 (0%)
Strand=Plus/Plus
Query 42 CGGCGGAGATGTAATTGAGACGGCGGTTAAGAGTCTTGGCAAAGGTTTCGATTTGACGGC 101
||| ||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 24 CGGAGGAGATGTAATCGAAACGGCGGTTAAGAGTCTTGGGAAAGGGTTCGATTTGACGGC 83
Query 102 GGATTTCCGGTTGAAATACTGTAAAGACGGCGACGGCTCCGCCGGAGATGACAGATTGGT 161
||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||
Sbjct 84 GGATTTCCGGTTGAAATACTGCAAAGACGGCGACGGCGCAGCCGGAGATGACAGGTTGGT 143
Query 162 TGTGCTTGACCAAACTCAAAACAGAGAATTGCATATTCCTGGTTTCGGTGTTTTTCAAAA 221
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 144 TGTCCTTGACCAAACTCAAAACAGAGAATTGCATATTCCTGGTTTCGGAGTTTTTCAAAA 203
Query 222 TGTCTCCGCCGATATAAACTGCGACAAAGGAGAACGAACTCGATTCCGTTCCGACATTCT 281
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 204 TGTCTCCGCCGATATAAACTGCGACAAAGGAGAACGAACTCGATTCCGTTCGGACATTCT 263
Query 282 TGACTTCAACAAGATGTCGGAGTATTTTAACCAGAGGTCGTCGGTGACCGGAAAAATACC 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CGACTTCAACAAGATGTCGGAGTATTTTAACCAGAGGTCGTCGGTGACCGGAAAAATACC 323
Query 342 GTCGGGAAATTTCAACGCGACGTTCGGGTTTCAAAGCGGGTCATGGGCGACAGACGCCG- 400
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 324 GTCGGGAAATTTTAACGCGACGTTCGGGTTTCAAAGCGGGTCATGGGCAACAGACG-CGT 382
Query 401 CAAACGTTAAATCTTTAGGTCTTGACGCTTCTGTTGTAACGCTATTTAATCTCCACATAC 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 383 CAAACGTTAAATCTTTAGGTCTTGACGCTTCTGTTGTAACGCTATTTAATCTCCATATCC 442
Query 461 ACAATCCTAATCGTTTGCGGCTCACTGACCGCGTCCGAAACGCAGTTCCTTCATCTTGGG 520
||||||| ||||||||||| |||||||| ||||| |||||||||||||| || || ||||
Sbjct 443 ACAATCCCAATCGTTTGCGTCTCACTGATCGCGTTCGAAACGCAGTTCCGTCTTCCTGGG 502
Query 521 ACCCACAATTATTGGCTAGGTTTATAGAGAGGTATGGAACACACGTAATAACAGGAGTGA 580
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 503 ACCCACAATTATTGGCTAGGTTTATAGAGAGGTATGGGACACACGTAATAACTGGAGTGA 562
Query 581 GCGTAGGAGGACAAGACGTGGTAGTTGTGAGGCAAGACAAGTCATCTGATCTCGACAACG 640
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 563 GCGTAGGAGGACAAGACGTGGTAGTTGTGAGGCAAGACAAGTCATCCGATCTCGACAACG 622
Query 641 ACCTCCTCCGTCACCATCTCTATGATCTTGGCGACCAATTGTTTACCGGCTCTTGCCTTC 700
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 623 ACCTCCTCCGTCACCATCTCTATGATCTCGGCGACCAATTGTTTACCGGCTCTTGCCTTC 682
Query 701 TCTCTACACGCCGGCTCAATAAGGCCTATCACCACTCACACTCTCAACCCAAGTTTCCGG 760
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 683 TCTCCACACGCCGGCTCAATAAGGCCTATCACCACTCACACTCTCAGCCCAAGTTTCCGG 742
Query 761 AGGCTTTCAACGTCTTTGATGACAAACAAACGGTTGCTTTCAACAATTTTTCGATAAATT 820
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 743 AGGCTTTCAACGTCTTTGATGACAAACAAACGGTTGCTTTCAATAATTTCTCGATAAATT 802
Query 821 CTCAAAATGGAATAACGGTTATATGCGCCAAAAGAGGAGGCGACGGAAGAGCAAAGAGCC 880
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 803 CCCAAAATGGAATAACGGTTATATGTGCAAAAAGAGGAGGCGACGGAAGAGCAAAGAGCC 862
Query 881 ATAGCGAATGGCTAATAACAGTCCCGGACAAGCCTGACGCGATCAATTTCAACTTTATTC 940
|||||||||||||||||||||| ||| | || || |||||||||||||||||||||||||
Sbjct 863 ATAGCGAATGGCTAATAACAGTTCCGCAAAATCCCGACGCGATCAATTTCAACTTTATTC 922
Query 941 CGATCACATCACTCCTTAAAGACGTCCCTGGCTCTGGTCTTCTCTCTCACGCCATGTCTC 1000
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 923 CGATCACATCACTCCTTAAAGACGTCCCAGGCTCTGGTCTTCTCGCTCACGCCATGTCTC 982
Query 1001 TCTACCTAAGATACAAGCCGCCGTTAATGGACCTACAATACTTCTTGGACTTCTCTGGGC 1060
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 983 TCTACCTCAGATATAAGCCGCCGTTAATGGACCTACAATATTTCTTGGACTTCTCTGGGC 1042
Query 1061 CAAGAGCATGGGCTCCGGTCCATAACGACCTTCCATTTGGCGCGGCACCAAATATGGCTT 1120
||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1043 CAAGAACATGGGCTCCGGTCCATAACGACCTTCCGTTTGGCGCGGCGCCAAATATGGCTT 1102
Query 1121 CGGCCTATCCAGCTCTTCACATCAACTTCATGGGTCCCAAACTATACGTTAATACCACTC 1180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CGGCATATCCAGCTCTTCACATCAACTTCATGGGTCCCAAACTATACGTTAATACCACTC 1162
Query 1181 CCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTTTTCCTTGAAGGCAAGAAAT 1240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1163 CCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTGTTCCTTGAAGGCAAGAAAT 1222
Query 1241 GCAATAGGCTGGCTATACACCTACAACACCTAGACAACACAAGAACTACGGTTGGGGAAA 1300
|||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||
Sbjct 1223 GCAATAGGCTTGCTATACACTTACAACACCTAGAAAATACAAGAACTACAGTTGGGGAAA 1282
Query 1301 AGATCACTGACGAACATATATGGAGAGGCTCCGATCAAATCACCGACAATGATCGCTACT 1360
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1283 AGATCACCGACGAACATATATGGAGAGGCTCCGATCAAATCACCGATAATGATCGCTACT 1342
Query 1361 TCGAACCTTTAAACGGTAAGAAATTCTCACACGTGTGTACGGTTCCAGTGAAGTACGACC 1420
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1343 TCGAATCTTTAAACGGTAAGAAATTCTCACACGTGTGTACGGCTCCAGTGAAGTATGACC 1402
Query 1421 CAAACTGGATCAAAACAACAAGCAATCACAAGTCCCAAAACGACGTAGCTTTCATCGTCA 1480
|||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1403 CAAACTGGATCACAACAGCAAGCAATCACAAGTCCCAAAACGACGTCGCTTTCATCGTCA 1462
Query 1481 CCGGAGCACAACTCGAAGTGAAAAAACACGGCTCAAAATCCGTTCTCCATCTCCGACTCC 1540
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 1463 CCGGAGCACAACTCGAAGTGAAGAAACATGGCTCAAAATCCGTTCTCCATCTGCGTCTCC 1522
Query 1541 GTTACACTAAAGTCTCTGATCATTACGTCGTTCAGAATAGTTGGGTTCATGGACCAATTG 1600
||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1523 GTTTCACCAAAGTCTCTGATCACTACGTCGTTCAGAATAGTTGGGTTCATGGACCAACCG 1582
Query 1601 GGACTTCTCAGAAATCGGGAATCTTCTCTTCCATGAGCATGCCGTTGACTAGTGGGAGTG 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 GGACTTCTCAGAAATCGGGAATCTTCTCTTCCATGAGCATGCCGTTGACTAGTGGGAGTG 1642
Query 1661 TTCATCATAATATGATCCAAAAAGACAAAAACGAGGTCGTTTTGGATTCAGGTGTCTTCC 1720
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1643 TTCATCATAATATGATCCAAAAAGACAAAAACGAAGTCGTTTTGGATTCAGGTGTCTTCC 1702
Query 1721 CTGGTGGACCTCCTGTGCCGGCGAATAACAAGATAGTGAAATTCGTCGATCTTTCGCAGT 1780
| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1703 CCGGAGGACCTCCGGTGCCGGCGAATAACAAGATAGTGAAATTCGTGGATCTTTCGCAGT 1762
Query 1781 TATGTCGAGGACCTCAACATAGTCCTGGTCATTGGTTAGTCACTGGAGTGAGGCTTTACT 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 TATGTCGAGGACCTCAACATAGTCCTGGTCATTGGTTAGTCACTGGAGTGAGGCTTTACT 1822
Query 1841 TGGACAAGGGCAAACTTTGCTTACACGTCAAGTTTGCTCTGCTACATCGCCAACGTCTTC 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 TGGACAAGGGCAAACTTTGCTTACACGTCAAGTTTGCTCTGCTACATCGCCAACGTCTTC 1882
Query 1901 TTGTCTCTTCTTGAAGAAAATATAACATTAtttttttATATACAAGTACGTTTCtttttt 1960
||||||||||||||||| ||||||||||||||||| ||| ||| ||| ||||||||||
Sbjct 1883 TTGTCTCTTCTTGAAGAGAATATAACATTATTTTTG-ATA--CAATTACTTTTCTTTTTT 1939
Query 1961 tGTTTTCCTCCAAAATTGCGACATACAAAGGATGATTTCTTGATTTTGGAGTGTGTG-A- 2018
|| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 1940 TGGTTTCCTCCAAAATTGCGATATACAAAGGGTGATTTCTTGATTTTGGAGTGTGTGTAT 1999
Query 2019 ATAT-ATAGAGCT-GTGTATGTGCTTTAATGGGATTGGCCCATTCAGAGAAATTGTTTAT 2076
|||| |||||| | ||||||||| ||| |||||||||| || || ||||||||||||| |
Sbjct 2000 ATATTATAGAGGTTGTGTATGTGTTTTGATGGGATTGGTCCTTTAAGAGAAATTGTTTGT 2059
Query 2077 GTACATACATATGTTGAGAGGTCGAACATAGAA-CTCTTAGTGGTAGCAAGTTTTT 2131
|||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct 2060 GTACATACATATGTTGAGAGGTTGAAAATAGAAACTCTTAGTTATAGCAAGTTTTT 2115
> Ahg355629 jgi|Araly1|355629|fgenesh1_pg.C_scaffold_7002802
Length=639
Score = 758 bits (410), Expect = 0.0
Identities = 478/512 (93%), Gaps = 0/512 (0%)
Strand=Plus/Plus
Query 1114 ATGGCTTCGGCCTATCCAGCTCTTCACATCAACTTCATGGGTCCCAAACTATACGTTAAT 1173
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTTCGGCATATCCAGCTCTTCACATCAACTTCATAGGTCCCAAACTATACGTTAAT 60
Query 1174 ACCACTCCCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTTTTCCTTGAAGGC 1233
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACCACTCCCGTGACTAGCGAGAAGAATCCAGTAACCGGAATGCGATTGTTCCTTGAAGGC 120
Query 1234 AAGAAATGCAATAGGCTGGCTATACACCTACAACACCTAGACAACACAAGAACTACGGTT 1293
|||||||| |||||||| ||||||||| ||||||||||||| || ||||||||||| |||
Sbjct 121 AAGAAATGTAATAGGCTTGCTATACACTTACAACACCTAGAAAATACAAGAACTACAGTT 180
Query 1294 GGGGAAAAGATCACTGACGAACATATATGGAGAGGCTCCGATCAAATCACCGACAATGAT 1353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGGAAAAGATCACCGACGAACATATATGGAGAGGCTCCGATCAAATCACCGACAATGAT 240
Query 1354 CGCTACTTCGAACCTTTAAACGGTAAGAAATTCTCACACGTGTGTACGGTTCCAGTGAAG 1413
||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 241 CGCTATTTCGAAACTTTAAACGGTAAGAAATTCTCACACATGTGTACGGCTCCAGTGAAG 300
Query 1414 TACGACCCAAACTGGATCAAAACAACAAGCAATCACAAGTCCCAAAACGACGTAGCTTTC 1473
|| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 301 TATGACCCAAACTGGATCACAACAAGAAGCAATCACAAGTCCCAAAACGACGTCGCTGTC 360
Query 1474 ATCGTCACCGGAGCACAACTCGAAGTGAAAAAACACGGCTCAAAATCCGTTCTCCATCTC 1533
||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 361 ATCGTCACCAGAGCACAACTCGAAGTGAAGAAACATGGCTCAAAATCTGTTCTCCATCTC 420
Query 1534 CGACTCCGTTACACTAAAGTCTCTGATCATTACGTCGTTCAGAATAGTTGGGTTCATGGA 1593
|| || |||| ||||||||||||||| || ||| |||| ||||| | |||||||||||||
Sbjct 421 CGTCTTCGTTTCACTAAAGTCTCTGACCACTACATCGTACAGAACAATTGGGTTCATGGA 480
Query 1594 CCAATTGGGACTTCTCAGAAATCGGGAATCTT 1625
|||| ||||||||||||||||||||||||||
Sbjct 481 CCAACCGGGACTTCTCAGAAATCGGGAATCTT 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82541560915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5