BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14800.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921631 jgi|Araly1|921631|scaffold_102912.1 691 0.0
Ahg942732 jgi|Araly1|942732|scaffold_603276.1 289 4e-77
> Ahg921631 jgi|Araly1|921631|scaffold_102912.1
Length=616
Score = 691 bits (374), Expect = 0.0
Identities = 494/550 (90%), Gaps = 15/550 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGCT 60
||||||| ||||||||||||| |||||||| |||| ||||||||||| |||||||||| |
Sbjct 21 ATGGCTGCAGTTGATGTTGTTCCAATTCCTACTAATGCAAACTATGTTGCTTTTGATGAT 80
Query 61 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGCT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 81 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGTCTACTTCGTTTTTGGGATGCT 140
Query 121 CGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAAA 180
|||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 141 CGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAAA 200
Query 181 TGCTCCGTAATCCATGCTTTTATCCCAGCAGCTCTTGCTTCACATTTCCGCCAAGTTTTG 240
||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 201 TGCTCAGTAATCCATGCTTTTATCCCAGCAGCTCTTGCCTCACAATTCCGTCAAGTTTTG 260
Query 241 CGTGAAGG--CATAATCTTCAATGTTAGTGGGTTTGAAGTGGGACGTTGCACGAAACTCT 298
|||||||| | || ||| |||| |||| ||||||||||||||||| ||||| |||||||
Sbjct 261 CGTGAAGGTTC-TA-TCTACAATATTAGCGGGTTTGAAGTGGGACGGTGCACAAAACTCT 318
Query 299 ACAAGATCACTGACCATCCTTTTCTCCTCCGTTTTCTCCCTGCCACAACGATTATTGAAG 358
|||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||
Sbjct 319 ACAAGATCACTGACCATCCTTTTCTCCTACGTTTTCTCCCTGCCACAACGACTGTAGAAC 378
Query 359 TTTCAGATGTTGGCCCTACAATTGAGA-GGGAAAAATTTATGCTACGTAACTTTGACAAC 417
||||||||||||||||||||||||| | ||||| |||| ||||||||||| |||||||||
Sbjct 379 TTTCAGATGTTGGCCCTACAATTGA-ACGGGAACAATTCATGCTACGTAATTTTGACAAC 437
Query 418 CTTCAAGCTCTTGCTAACACCAACATTGAACTTCCTG--G-------CCAAATCACTTTC 468
|| |||||||| ||||||||||||||||||||||||| | ||||||| | |||
Sbjct 438 CTACAAGCTCTAGCTAACACCAACATTGAACTTCCTGATGTTGTAGGCCAAATCTCCTTC 497
Query 469 GTCCAAGGGTCAAACTTGAATGATCCAACTTCTACTCAACGTTTGGTTTTGCGATACCGG 528
|||||||||| ||| ||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 498 ATCCAAGGGTCGAACCTGAATGACCCAACTTCCACTCAACGTTTGGTTTTGCGTTACCGT 557
Query 529 ATTGATTCGT 538
|| ||| |||
Sbjct 558 ATCGATACGT 567
> Ahg942732 jgi|Araly1|942732|scaffold_603276.1
Length=246
Score = 289 bits (156), Expect = 4e-77
Identities = 187/202 (93%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 1 ATGGCTG-AAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGC 59
||||||| || ||||||||||| |||||||| | || ||||||||||| ||||||||||
Sbjct 21 ATGGCTGCAA-TTGATGTTGTTCCAATTCCTACCAATGCAAACTATGTTGCTTTTGATGA 79
Query 60 TTTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGC 119
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 80 TTTACGACTTGGTCGCTCTACTCAACAGGTTGTTGGTCGGCTACTTCGTTTTTGGGATGC 139
Query 120 TCGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAA 179
||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 140 TCGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAA 199
Query 180 ATGCTCCGTAATCCATGCTTTT 201
|||||| |||||||||||||||
Sbjct 200 ATGCTCAGTAATCCATGCTTTT 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5