BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14810.1 Length=1450 Score E Sequences producing significant alignments: (Bits) Value Ahg312479 jgi|Araly1|312479|fgenesh1_pm.C_scaffold_1001259 1367 0.0 Ahg472171 jgi|Araly1|472171|fgenesh2_kg.1__2125__AT1G14810.1 409 3e-113 > Ahg312479 jgi|Araly1|312479|fgenesh1_pm.C_scaffold_1001259 Length=2094 Score = 1367 bits (740), Expect = 0.0 Identities = 800/830 (96%), Gaps = 0/830 (0%) Strand=Plus/Plus Query 22 atctctctgtctctcACTTCTTCTTCCTCACGGCGGCGACAATGGCGACGTTCACTCATC 81 |||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 926 ATCTCTCTATCTCCCACTTCTTCTTCCTCACGACGGCGACAATGGCGACGTTCACGCATC 985 Query 82 AAACCCCACAAACCCATTTCCTCTCTCGCCTTCCTCTCAGAGCTAAACCTAGACACTTCT 141 |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 986 AAACTCCACAAACCCATTTCCTCTCTCGCCTTCCTCTCAGAGCTAGACCCAGACACTTCT 1045 Query 142 CCGCAAGAGTCAAAATGTCTCTCCAAGAATCTGCGCCTTCACTCGCCGTCGTTGGCGTTA 201 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1046 CCGCAAGAGTCAAAATGTCTCTCCAAGAATCTGCGCCTTCTCTCGCCGTCGTTGGCGTTA 1105 Query 202 CCGGAGCCGTCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCT 261 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1106 CCGGAGCCGTCGGACAAGAATTCCTCTCCGTGTTATCCGATCGAGACTTCCCTTATAGCT 1165 Query 262 CCATCAAGATGCTTGCATCGAAACGCTCCGCAGGGAAGCGTGTTGCCTTCGATGGCCATG 321 || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1166 CCGTCAAGATGCTTGCATCGAAACGCTCCGCAGGGAAACGTGTTGCCTTCGATGGCCGTG 1225 Query 322 AATACACGGTGGAGGAGCTCACGGCGGATAGCTTCAACGGTGTAGACATAGCTTTGTTCA 381 ||||||||||||||||||||||||| || |||||| |||| |||||||| |||||||||| Sbjct 1226 AATACACGGTGGAGGAGCTCACGGCAGAGAGCTTCGACGGCGTAGACATTGCTTTGTTCA 1285 Query 382 GTGCTGGTGGATCCATAAGCAAAGAGTTTGGTCCTCTGGCGGCGGAGAAAGGAACCATTG 441 ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1286 GTGCTGGTGGATCTATAAGCAAGGAGTTTGGTCCTCTCGCGGCGGAGAAAGGAACCATTG 1345 Query 442 TTGTTGATAATAGCTCGGCTTTTAGAATGGTTGATGGAGTTCCGCTTGTGATTCCTGAAG 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1346 TTGTTGATAATAGCTCGGCTTTTAGAATGGTTGATGGAGTTCCGCTTGTGATTCCTGAAG 1405 Query 502 TGAATCCAGAAGCAATGAAAGGGATCAAAGTTGGAATGGGCAAAGGGGCTTTGATTGCAA 561 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1406 TGAATCCAGAAGCAATGAAAGGGATTAAAGTTGGAATGGGCAAAGGAGCTTTGATTGCAA 1465 Query 562 ACCCTAATTGCTCCACCATTATCTGTTTGATGGCTGTTACGCCTCTTCATCATCACGCAA 621 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1466 ACCCTAATTGCTCCACCATTATCTGTTTGATGGCAGTTACTCCTCTTCATCATCACGCAA 1525 Query 622 AGGTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTA 681 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1526 AGGTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTA 1585 Query 682 TGGAAGAGCTTGTTCAGCAGACTCGTGAGGTTTTAGAGGGTAAACCTCCGACTTGTAACA 741 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1586 TGGAAGAGCTTGTGCAGCAGACTCGTGAGGTTTTAGAGGGTAAACCTCCGACTTGTAACA 1645 Query 742 TCTTCGGGCAGCAGTATGCATTTAACTTGTTTTCACATAATGCTCCTATTCTTGACAACG 801 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 1646 TCTTCGGACAGCAGTATGCATTTAACTTATTTTCGCATAATGCTCCTATTCTTGACAATG 1705 Query 802 GTTACAACGAAGAGGAAATGAAACTTGTGAAGGAGACAAGGAAGATCTGG 851 ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1706 GTTACAATGAAGAGGAAATGAAACTTGTGAAGGAGACAAGGAAGATCTGG 1755 Score = 411 bits (222), Expect = 1e-113 Identities = 232/237 (98%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 954 AACACAGCAAGGGAGATACTGAAGAAAGCACCTGGAGTTTATATAATAGATGACCGTGCT 1013 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1858 AACACAGCAAGGGAGATACTGAAGAAAGCACCTGGAGTTTATATAATAGACGACCGTGCT 1917 Query 1014 TCAAATACTTTCCCTACTCCACTCGATGTCTCTAACAAAGACGATGTAGCGGTTGGTAGG 1073 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1918 TCAAATACTTTCCCTACTCCACTAGATGTCTCTAACAAAGACGATGTAGCGGTTGGTAGG 1977 Query 1074 ATAAGGCGAGACGTGTCTCAAGATGGCAATTTCGGGCTGGACATATTCGTTTGTGGAGAC 1133 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1978 ATAAGGCGAGACGTGTCTCAAGATGGCAATTTCGGGCTGGACATATTTGTTTGCGGAGAC 2037 Query 1134 CAAATACGCAAAGGAGCTGCTCTGAATGCTGTTCAGATCGCTGAGATGCTTCTCTGA 1190 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2038 CAAATACGGAAAGGAGCTGCTCTGAATGCTGTTCAGATCGCTGAGATGCTTCTCTGA 2094 > Ahg472171 jgi|Araly1|472171|fgenesh2_kg.1__2125__AT1G14810.1 Length=773 Score = 409 bits (221), Expect = 3e-113 Identities = 251/265 (95%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 151 TCAAAATGTCTCTCCAAGAATCTGCGCCTTCACTCGCCGTCGTTGGCGTTACCGGAGCCG 210 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1 TCAAAATGTCTCTCCAAGAATCTGCGCCTTCCCTCGCCGTCGTTGGAGTTACCGGAGCCG 60 Query 211 -TCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCTCCATCAAG 269 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 TTCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCTCCGTCAAG 120 Query 270 ATGCTTGCATCGAAACGCTCCGCAGGGAAGCGTGTTGCCTTCGATGGCCATGAATACACG 329 ||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||| Sbjct 121 ATGCTTGCATCGAAACGCTCCGCAGGGAAACGTCTAGCCTTCGATGGCCGTGAATACACG 180 Query 330 GTGGAGGAGCTCACGGCGGATAGCTTCAACGGTGTAGACATAG-CTTTGTTCAGTGCTGG 388 |||||||||||||||||||| |||||| |||| ||||||| || |||||||||||||||| Sbjct 181 GTGGAGGAGCTCACGGCGGAGAGCTTCGACGGCGTAGACA-AGGCTTTGTTCAGTGCTGG 239 Query 389 TGGATCCATAAGCAAAGAGTTTGGT 413 ||||||||||||||| ||||||||| Sbjct 240 TGGATCCATAAGCAAGGAGTTTGGT 264 Score = 222 bits (120), Expect = 5e-57 Identities = 161/179 (90%), Gaps = 9/179 (5%) Strand=Plus/Plus Query 643 GTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGA 702 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 263 GTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTG-TCAGCAGA 321 Query 703 CT---C-GTG---AGGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG 755 || | ||| | |||||||||||||||||||||||||||| |||||| || || ||| Sbjct 322 CTCGCCAGTGATTATGTTTTAGAGGGTAAACCTCCGACTTGTATCATCTTTGGACAACAG 381 Query 756 TATGCATTTAACTTGTTTTCACATAATGCTCCTATTCTTGACAACGGTTACAACGAAGA 814 |||||||||||||||||| | |||||||||||||||||||||||||| |||| ||||| Sbjct 382 TATGCATTTAACTTGTTT-CGCATAATGCTCCTATTCTTGACAACGGAGACAAGGAAGA 439 Score = 178 bits (96), Expect = 1e-43 Identities = 108/114 (95%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 833 GGAGACAAGGAAGATCTGGAATGACACAGAAGTAAAAGTAACAGCAACGTGTATACGTGT 892 ||||||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||| Sbjct 426 GGAGACAAGGAAGATCTCGAATGACACTGAAGTAAAAGTAACAGCTACATGTATACGTGT 485 Query 893 TCCAGTTATGCGTGCTCATGCAGAGAGTGTGAATCTTCAGTTTGAGAATCCTCT 946 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 486 TCCAGTTATGCGTGCTCATGCAGAGAGTGTAAATCTCCAGTTTGAGAATCCTCT 539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54240508880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5