BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14810.1
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312479 jgi|Araly1|312479|fgenesh1_pm.C_scaffold_1001259 1367 0.0
Ahg472171 jgi|Araly1|472171|fgenesh2_kg.1__2125__AT1G14810.1 409 3e-113
> Ahg312479 jgi|Araly1|312479|fgenesh1_pm.C_scaffold_1001259
Length=2094
Score = 1367 bits (740), Expect = 0.0
Identities = 800/830 (96%), Gaps = 0/830 (0%)
Strand=Plus/Plus
Query 22 atctctctgtctctcACTTCTTCTTCCTCACGGCGGCGACAATGGCGACGTTCACTCATC 81
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 926 ATCTCTCTATCTCCCACTTCTTCTTCCTCACGACGGCGACAATGGCGACGTTCACGCATC 985
Query 82 AAACCCCACAAACCCATTTCCTCTCTCGCCTTCCTCTCAGAGCTAAACCTAGACACTTCT 141
|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 986 AAACTCCACAAACCCATTTCCTCTCTCGCCTTCCTCTCAGAGCTAGACCCAGACACTTCT 1045
Query 142 CCGCAAGAGTCAAAATGTCTCTCCAAGAATCTGCGCCTTCACTCGCCGTCGTTGGCGTTA 201
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1046 CCGCAAGAGTCAAAATGTCTCTCCAAGAATCTGCGCCTTCTCTCGCCGTCGTTGGCGTTA 1105
Query 202 CCGGAGCCGTCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCT 261
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1106 CCGGAGCCGTCGGACAAGAATTCCTCTCCGTGTTATCCGATCGAGACTTCCCTTATAGCT 1165
Query 262 CCATCAAGATGCTTGCATCGAAACGCTCCGCAGGGAAGCGTGTTGCCTTCGATGGCCATG 321
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1166 CCGTCAAGATGCTTGCATCGAAACGCTCCGCAGGGAAACGTGTTGCCTTCGATGGCCGTG 1225
Query 322 AATACACGGTGGAGGAGCTCACGGCGGATAGCTTCAACGGTGTAGACATAGCTTTGTTCA 381
||||||||||||||||||||||||| || |||||| |||| |||||||| ||||||||||
Sbjct 1226 AATACACGGTGGAGGAGCTCACGGCAGAGAGCTTCGACGGCGTAGACATTGCTTTGTTCA 1285
Query 382 GTGCTGGTGGATCCATAAGCAAAGAGTTTGGTCCTCTGGCGGCGGAGAAAGGAACCATTG 441
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1286 GTGCTGGTGGATCTATAAGCAAGGAGTTTGGTCCTCTCGCGGCGGAGAAAGGAACCATTG 1345
Query 442 TTGTTGATAATAGCTCGGCTTTTAGAATGGTTGATGGAGTTCCGCTTGTGATTCCTGAAG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TTGTTGATAATAGCTCGGCTTTTAGAATGGTTGATGGAGTTCCGCTTGTGATTCCTGAAG 1405
Query 502 TGAATCCAGAAGCAATGAAAGGGATCAAAGTTGGAATGGGCAAAGGGGCTTTGATTGCAA 561
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1406 TGAATCCAGAAGCAATGAAAGGGATTAAAGTTGGAATGGGCAAAGGAGCTTTGATTGCAA 1465
Query 562 ACCCTAATTGCTCCACCATTATCTGTTTGATGGCTGTTACGCCTCTTCATCATCACGCAA 621
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1466 ACCCTAATTGCTCCACCATTATCTGTTTGATGGCAGTTACTCCTCTTCATCATCACGCAA 1525
Query 622 AGGTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 AGGTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTA 1585
Query 682 TGGAAGAGCTTGTTCAGCAGACTCGTGAGGTTTTAGAGGGTAAACCTCCGACTTGTAACA 741
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TGGAAGAGCTTGTGCAGCAGACTCGTGAGGTTTTAGAGGGTAAACCTCCGACTTGTAACA 1645
Query 742 TCTTCGGGCAGCAGTATGCATTTAACTTGTTTTCACATAATGCTCCTATTCTTGACAACG 801
||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1646 TCTTCGGACAGCAGTATGCATTTAACTTATTTTCGCATAATGCTCCTATTCTTGACAATG 1705
Query 802 GTTACAACGAAGAGGAAATGAAACTTGTGAAGGAGACAAGGAAGATCTGG 851
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 GTTACAATGAAGAGGAAATGAAACTTGTGAAGGAGACAAGGAAGATCTGG 1755
Score = 411 bits (222), Expect = 1e-113
Identities = 232/237 (98%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 954 AACACAGCAAGGGAGATACTGAAGAAAGCACCTGGAGTTTATATAATAGATGACCGTGCT 1013
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1858 AACACAGCAAGGGAGATACTGAAGAAAGCACCTGGAGTTTATATAATAGACGACCGTGCT 1917
Query 1014 TCAAATACTTTCCCTACTCCACTCGATGTCTCTAACAAAGACGATGTAGCGGTTGGTAGG 1073
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1918 TCAAATACTTTCCCTACTCCACTAGATGTCTCTAACAAAGACGATGTAGCGGTTGGTAGG 1977
Query 1074 ATAAGGCGAGACGTGTCTCAAGATGGCAATTTCGGGCTGGACATATTCGTTTGTGGAGAC 1133
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1978 ATAAGGCGAGACGTGTCTCAAGATGGCAATTTCGGGCTGGACATATTTGTTTGCGGAGAC 2037
Query 1134 CAAATACGCAAAGGAGCTGCTCTGAATGCTGTTCAGATCGCTGAGATGCTTCTCTGA 1190
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 CAAATACGGAAAGGAGCTGCTCTGAATGCTGTTCAGATCGCTGAGATGCTTCTCTGA 2094
> Ahg472171 jgi|Araly1|472171|fgenesh2_kg.1__2125__AT1G14810.1
Length=773
Score = 409 bits (221), Expect = 3e-113
Identities = 251/265 (95%), Gaps = 3/265 (1%)
Strand=Plus/Plus
Query 151 TCAAAATGTCTCTCCAAGAATCTGCGCCTTCACTCGCCGTCGTTGGCGTTACCGGAGCCG 210
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1 TCAAAATGTCTCTCCAAGAATCTGCGCCTTCCCTCGCCGTCGTTGGAGTTACCGGAGCCG 60
Query 211 -TCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCTCCATCAAG 269
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TTCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCTCCGTCAAG 120
Query 270 ATGCTTGCATCGAAACGCTCCGCAGGGAAGCGTGTTGCCTTCGATGGCCATGAATACACG 329
||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||
Sbjct 121 ATGCTTGCATCGAAACGCTCCGCAGGGAAACGTCTAGCCTTCGATGGCCGTGAATACACG 180
Query 330 GTGGAGGAGCTCACGGCGGATAGCTTCAACGGTGTAGACATAG-CTTTGTTCAGTGCTGG 388
|||||||||||||||||||| |||||| |||| ||||||| || ||||||||||||||||
Sbjct 181 GTGGAGGAGCTCACGGCGGAGAGCTTCGACGGCGTAGACA-AGGCTTTGTTCAGTGCTGG 239
Query 389 TGGATCCATAAGCAAAGAGTTTGGT 413
||||||||||||||| |||||||||
Sbjct 240 TGGATCCATAAGCAAGGAGTTTGGT 264
Score = 222 bits (120), Expect = 5e-57
Identities = 161/179 (90%), Gaps = 9/179 (5%)
Strand=Plus/Plus
Query 643 GTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGA 702
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 263 GTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTG-TCAGCAGA 321
Query 703 CT---C-GTG---AGGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG 755
|| | ||| | |||||||||||||||||||||||||||| |||||| || || |||
Sbjct 322 CTCGCCAGTGATTATGTTTTAGAGGGTAAACCTCCGACTTGTATCATCTTTGGACAACAG 381
Query 756 TATGCATTTAACTTGTTTTCACATAATGCTCCTATTCTTGACAACGGTTACAACGAAGA 814
|||||||||||||||||| | |||||||||||||||||||||||||| |||| |||||
Sbjct 382 TATGCATTTAACTTGTTT-CGCATAATGCTCCTATTCTTGACAACGGAGACAAGGAAGA 439
Score = 178 bits (96), Expect = 1e-43
Identities = 108/114 (95%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 833 GGAGACAAGGAAGATCTGGAATGACACAGAAGTAAAAGTAACAGCAACGTGTATACGTGT 892
||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||||
Sbjct 426 GGAGACAAGGAAGATCTCGAATGACACTGAAGTAAAAGTAACAGCTACATGTATACGTGT 485
Query 893 TCCAGTTATGCGTGCTCATGCAGAGAGTGTGAATCTTCAGTTTGAGAATCCTCT 946
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 486 TCCAGTTATGCGTGCTCATGCAGAGAGTGTAAATCTCCAGTTTGAGAATCCTCT 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54240508880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5