BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14820.3
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312479 jgi|Araly1|312479|fgenesh1_pm.C_scaffold_1001259 1090 0.0
Ahg911766 jgi|Araly1|911766|Al_scaffold_0001_2020 852 0.0
> Ahg312479 jgi|Araly1|312479|fgenesh1_pm.C_scaffold_1001259
Length=2094
Score = 1090 bits (590), Expect = 0.0
Identities = 652/683 (95%), Gaps = 0/683 (0%)
Strand=Plus/Plus
Query 232 AGGGATATGACAAACCAACATTGATGAGGTTCCTGGTGGCAAGATCAATGGACCCAGTCA 291
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 AGGGATATGAAAAACCGACATTGATGAGGTTCCTGGTGGCAAGATCAATGGACCCAGTCA 271
Query 292 AGGCAGCAAAGATGTTTGTAGATTGGCAAAAATGGAGAGCCTCCATGGTTCCTCCAACTG 351
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 272 AAGCAGCAAAGATGTTTGTAGATTGGCAAAAGTGGAGAGCCTCCATGATTCCTCCAACTG 331
Query 352 GATTCATCCCTGAGTCAGAAGTGCAGGATGAATTGGAATTCAGAAAGGTCTGTCTTCAGG 411
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 332 GATTCATCCCTGAGTCAGAAGTGAAGGATGAATTGGAATTCAGAAAGGTCTGTCTTCAGG 391
Query 412 GTCCGACCAAATCCGGACACCCATTGGTGCTTGTCATAACCTCTAAGCATTTTGCTTCTA 471
|||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 392 GTCCAACCAAATCCGGACACCCTTTGGTGCTTGTCATAACCTCTAAGCATTTTCCTTCTA 451
Query 472 AGGATCCAGCTAACTTCAAGAAGTTTGTTGTTTATGCGCTAGACAAAACAATCGCAAGTG 531
|||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 452 AGGATCAAGTTAACTTCAAGAAGTTCGTTGTTTATGTGCTAGACAAAACAATCGCAAGTG 511
Query 532 GCAACAATGGCAAAGAAGTTGGAGGTGAGAAATTAGTAGCCGTTATTGATCTGGCAAACA 591
||| ||| ||||| ||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 512 GCATCAAAGGCAACGAAATTGGAGATGAGAAGTTAGTAGCCGTTATTGATCTGGCAAACA 571
Query 592 TTACATACAAGAACCTTGATGCTCGTGGATTGATCACTGGCTTTCAATTCTTACAATCTT 651
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 572 TTACATACAAGAATCTTGATGCTCGTGGATTGATCACTGCCTTTCAATTCTTACAATCTT 631
Query 652 ACTACCCGGAACGCCTTGCAAAATGCTACATTTTGCATATGCCCGGATTCTTCGTGACCG 711
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 632 ACTACCCGGAACGCCTTGCAAAATGCTACCTCTTGCATATGCCCGGATTCTTCGTGACCG 691
Query 712 TTTGGAAATTCGTCTGCCGTTTTCTAGAGAAAGCAACTCAGGAAAAGATTGTGATAGTTA 771
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 692 TTTGGAATTTCGTCTGCCGTTTTCTAGAAAAAGCAACTCAGGAAAAGATTGTGATAGTAA 751
Query 772 CGGATGGAGAAGAACAGAGAAAATTCGAGGAGGAGATCGGAGCAGATGCTTTACCGGAAG 831
|||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 752 CGGACGGAGAAGAACTGAAAAAATTCGAGGAGGAGATCGGAGCAGAAGCTTTACCGGAAG 811
Query 832 AGTACGGTGGCCGAGCTAAGCTCACAGCAATCCAAGATGTTCTTCTTCCTCAGGCTGCTC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 812 AGTACGGTGGCCGAGCTAAGCTCACAGCAATCCAAGATGTTCTTCTTCCTCAGTCTGCTC 871
Query 892 CAGTAACTCTAACAAACAATAAT 914
|||||||||||||||||||||||
Sbjct 872 CAGTAACTCTAACAAACAATAAT 894
Score = 128 bits (69), Expect = 8e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 162 ATGGAGGAAAGCCAAGAACTTGCCTTGACCCAGTTGAGAAAATCGGTCGAGAAACTCTCT 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAAAGCCAAGAACTTGCCTTGACCCAGTTGAGAAAATCGGTCGAGAAACTCTCT 60
Query 222 TCTTCTACTGAG 233
||||| ||||||
Sbjct 61 TCTTCCACTGAG 72
> Ahg911766 jgi|Araly1|911766|Al_scaffold_0001_2020
Length=651
Score = 852 bits (461), Expect = 0.0
Identities = 596/658 (91%), Gaps = 22/658 (3%)
Strand=Plus/Plus
Query 255 ATGAGGTTCCTGGTGG---CAAGATCAATGGACCCAGTCAAGGCAGCAAAGATGTTTGTA 311
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAGGTTCCTGGTGGCAACAAGATCAATGGACCCAGTCAAAGCAGCAAAGATGTTTGTA 60
Query 312 GATTGGCAAAAATGGAGAGCCTCCATGGTTCCTCCAACTGGATTCATCCCTGAGTCAGAA 371
|||||||||||||||||||| ||||||||||| |||| ||| ||||| || || |||
Sbjct 61 GATTGGCAAAAATGGAGAGCTTCCATGGTTCCCCCAAATGG---GATCCCAGAATCGGAA 117
Query 372 GTGCA-GGATGAATTGGAATTCAGAAAGGTCTGTCTTCAGGGTCCGACCAAATCCGGACA 430
||| | |||||| ||||||||||||||| |||||||||||||||| ||||| || |||||
Sbjct 118 GTG-ACGGATGAGTTGGAATTCAGAAAGATCTGTCTTCAGGGTCCAACCAATTCAGGACA 176
Query 431 CCCATTGGTGCTTGTCATAACCTCTAAGCATTTTGCTTCTAAGGATCCAGCTAA-CT-TC 488
||| |||||||||||||||||||||||||||||| |||||||||||| | ||| || ||
Sbjct 177 CCCTTTGGTGCTTGTCATAACCTCTAAGCATTTTCCTTCTAAGGATCAAAATAACCTCTC 236
Query 489 AAGAAGTTTGTTGTTTATGCGCTAGACAAAACAATCGCAAGTGGCAACAATGGCAAAGAA 548
| |||| |||||||||| ||||||||||| || |||||||||| ||| ||||| |||
Sbjct 237 -A-CAGTTCGTTGTTTATGTTCTAGACAAAACTATTGCAAGTGGCATCAAAGGCAACGAA 294
Query 549 GTTGGAGGTGAGAAATTAG-TAGCCGTTATTGATCTGGCAAACATTACATACAAGAACCT 607
|| |||| |||||| |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 295 GTAGGAGATGAGAAGTTAGCT-GGCGTTATTGATCTGGCAAACATTACATACAAGAACCT 353
Query 608 TGATGCTCGTGGATTGATCACTGGCTTTCAATTCTTACAATCTTACTACCCGGAACGCCT 667
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGATGCTCGTGGATTGATCACCGGCTTTCAATTCTTACAATCTTACTACCCGGAACGCCT 413
Query 668 TGCAAAATGCTACATTTTGCATATGCCCGGATTCTTCGTGACCGTTTGGAAATTCGTCTG 727
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 414 TGCAAAATGCTACATCTTGCATATGCCCGGATTCTTCGTGGCCGTCTGGAAATTCGTCTG 473
Query 728 CCGTTTTCTAGAGAAAGCAACTCAGGAAAAGATTGTGATAGTTACGGATGGAGAAGAACA 787
||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 474 CCGCTTTCTAGAGAAAGCAACTCAGGAAAAGATTGTGATAGTAACGGATGAAGAAGAACA 533
Query 788 GAGAAAATTCGAGGAGGAGATCGGAGCAGATGCTTTACCGGAAGAGTACGGTGGCCGAGC 847
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAGAAAATTCGAGGAGGATATCGGAGCAGATGCTTTACCGGAAGAGTACGGTGGCCGAGC 593
Query 848 TAAGCTCA----C--A--GCAATCCAAGATGTTCTTCTTCCTCAGGCTGCTCCAGTAA 897
|||||||| | | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 594 TAAGCTCAGTAGCTCACAGCAATCCAAGATGTTCTTCTTCCTCAGACTGCTCCAGTAA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38809129506
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5