BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14850.1
Length=4620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911763 jgi|Araly1|911763|Al_scaffold_0001_2017 965 0.0
> Ahg911763 jgi|Araly1|911763|Al_scaffold_0001_2017
Length=2415
Score = 965 bits (522), Expect = 0.0
Identities = 586/617 (95%), Gaps = 4/617 (1%)
Strand=Plus/Plus
Query 1022 CATTATCAGATGGCAGGAGGATGTATCTTTCCACCTCCTCAAGTGGAAGTGGTAGTACTA 1081
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 790 CATTATCAGATGGCAGGAGGATG--TCTTTCCACCTCCTCAAGTGGAAGTGGTAGTACGA 847
Query 1082 TTAGCTTCAGTGGTTTCAACAACCACCGCCAGACTCCAAACTGTCTGAAAGTGGTTTCAA 1141
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 848 TTAGCTTCAGTGGGTTCAACAACCACAGCCAGACTCCAAACTGTCTGAAAGTGGTTTCAA 907
Query 1142 CCAGGCCATCTCCTCCATTGGGTGTTGGTGTTGGACTGGGTTTTGGGGCCGCATCTGTAG 1201
| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||
Sbjct 908 CTAGGCCATCTCCTCCATTGGGTGTAGGTGTTGGACTTGGTTTTGGGGCCCCATCTATAG 967
Query 1202 CCGGTAGAACTCAGAACGACGACCTATCTATGAAGATTGAAACAGCATACTATTCTGTTG 1261
|||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 968 CCGGTAGAACTCAGAATGAAGACCTCTCTATGAAAATTGAAACAGCATACTATTCTGTTG 1027
Query 1262 GAACTCTTGTCCTTTCAGATTCATCGCCACCTGCTATGTCTTCTCTTCTTGTTGTTAGCA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GAACTCTTGTCCTTTCAGATTCATCGCCACCTGCTATGTCTTCTCTTCTTGTTGTTAGCA 1087
Query 1322 GAGATTCAAGCGTGCACTCTCAGGCTGGCAGCAGTTCAGGGCCAAGTTCAAGGAGTTCTC 1381
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1088 GAGATTCAAGCGTGCACTCTCAGGTTGGCAGCAGTTCAGGGCCAAGTTCAAGGAGTTCTC 1147
Query 1382 GGGCTTTACGAGAAGTTGTGTCTTCCCTTCCTATTGAAGGCCGTATGCTTTTTGTAGCAG 1441
||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||| ||||
Sbjct 1148 GGGCTTTACGAGAAGTTTTGTCCTCCATTCCTATTGAAGGACGTATGCTTTTTGTTGCAG 1207
Query 1442 ATGTGCTCCCCTCTCCTGATACTGCTGCTACTATTCAATCATTATATTCAGAACTAGAAT 1501
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1208 ATGTGCTCCCCTCTCCTGATACTGCTGCTACTGTCCAATCATTATATTCAGAACTAGAAT 1267
Query 1502 ACTGTGGTGTCGAAGTCTCCGGAGAATCTTATGAAAAGGCATGTGGAAAACTCTGGGCGA 1561
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1268 ACTGTGGAATCGAAGTCTCTGGAGAATCTTATGAAAAGGCATGTGGAAAACTCTGGGCCA 1327
Query 1562 GAAGTGATCTTTCAACCCAGCATATTTTGCCAAGGAGAAAGATTGTT-GTTTTTACCACC 1620
|| |||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 1328 GAGGTGATCTTTCGACCCAGCATATTTTGCCAAGAAGAAAGATTGTTTGTTTT-ACCACC 1386
Query 1621 ATGGGTATGATGGAACT 1637
|||||||||||||||||
Sbjct 1387 ATGGGTATGATGGAACT 1403
Score = 870 bits (471), Expect = 0.0
Identities = 570/614 (93%), Gaps = 21/614 (3%)
Strand=Plus/Plus
Query 162 GCCGCCGTTGATTGAGGTTGGTGAGACTTGGGAATTGCCTTCTGTACTCATTGAGAGGTA 221
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 GCCGCCGTTGAGTGAGGTTGGTGAGACTTGGGAATTGCCTTCTGTACTCATTGAGAGGTA 152
Query 222 TAATACAGCCGGCGGGGAAGGGACGGCCTTATGTGGAATCTTTCCAGAGATTCGACGGGC 281
||||| ||||||||||||||||||||| | |||||| || ||||| ||||||| ||||||
Sbjct 153 TAATATAGCCGGCGGGGAAGGGACGGCATCATGTGGGATTTTTCCGGAGATTCCACGGGC 212
Query 282 TTGGGCATCCGTCGATAATTCTTTGTTTCTGTGGCGTTTTGACAAAAGGGATGGGCAGTG 341
||||||||||||| ||||||||||| | | | | | | | || |||
Sbjct 213 TTGGGCATCCGTC-----TTCTTTGTTTC--T-G-G-ATGGGC---A---AT-----GTG 251
Query 342 TCCTGAGTATAGTGGGGAGGAACAGGCAATTTGTGCGGTTGGTCTAGCGAAATGTAGACC 401
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TCCTGAGTATAGTGGAGAGGAACAGGCAATTTGTGCGGTTGGTCTAGCGAAATGTAGACC 311
Query 402 TGGAGTTTTTGTTGAAGCTATTCAATATCTTCTGGTGCTGGCAACTCCTGTTGAGTTGGT 461
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 312 TGGAGTTTTTGTTGAAGCTATTCAATATCTTTTGGTGTTGGCAACTCCTGTTGAGTTGGT 371
Query 462 TCTTGTTGGAGTGTGCTGCACTGAAGGACCTGATGGTAGAGATCCTTATGCTGAAATTTC 521
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 372 TCTTGTTGGAGTGTGCTGCACTGAAGGACCCGATGGTAGAGATCCTTATGCTGAAATTTC 431
Query 522 AGTACAACCTCTGCCCGACTATACAATATCATCAGATGGAGTGACAATGACATGCGTTAC 581
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 432 AGTACAGCCTCTGCCCGACTATACAATATCATCAGATGGAGTGACAATGACATGCGTAAC 491
Query 582 ATGTACCAATAAAGGGCGTATTTTCATGGCTGGACGTGATGGTCACATATATGAGCTGCT 641
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 492 ATGTACCAATAAAGGGCGCATTTTCATGGCTGGACGTGATGGTCACGTATATGAGCTGCT 551
Query 642 ATATACAACTGGCTCTGGCTGGAATAAACGTTGTCGTAAAGTGTGCCTTACTGCAGGCGT 701
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 ATATACAACTGGCTCAGGCTGGAATAAACGTTGTCGTAAAGTGTGCCTTACTGCAGGCGT 611
Query 702 AGGTAGTATGATCTCAAGGTGGGTTGTTCCAAATGTATTCAAGTTTGGTGCTGTAGATCC 761
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 612 AGGTAGTATGATCTCGAGGTGGGTTGTGCCAAATGTATTCAAGTTTGGAGCTGTAGATCC 671
Query 762 TGTTGTAGAGATGG 775
||||||||||||||
Sbjct 672 TGTTGTAGAGATGG 685
Score = 865 bits (468), Expect = 0.0
Identities = 522/548 (95%), Gaps = 4/548 (1%)
Strand=Plus/Plus
Query 3740 AGATCTGTCTGGAAATGCTTTACTTTGCCAACTATTCTGGTGATGCTGATTCAAGTATAA 3799
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 AGATCTGTCTGGAAATGCTCTACTTTGCCAACTATTCTGGTGATGCTGATTCAAGTATAA 1786
Query 3800 TAAGGGAAACATGGGCTAGACTCATTGACCAAGCTCTTTCACAAGGCGGAATACG-TGAG 3858
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||
Sbjct 1787 TAAGGGAAACATGGGCTAGACTCTTTGACCAAGCTCTTTCACAAGGCGGGATA-GCTGAG 1845
Query 3859 GCCTGTGCAGTTCTTAAGAGAGTCGGATCTCATATATACCCTGGCGATGGAGTTGTTTTA 3918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GCCTGTGCAGTTCTTAAGAGAGTCGGATCTCATATATACCCTGGCGATGGAGTTGTTTTA 1905
Query 3919 CCGCTGGATGTTTTATGCCTTCACCTTGAGAGAGCTGCACTTGAGAGATCAGAAAGGATT 3978
||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 1906 CCGCTCGATGTTTTATGCCTTCACCTCGAGAAAGCTGCACTTGAGAGATCAGAGAGGATT 1965
Query 3979 GAAAATGTTAGGGATGAAGACATAGCTAAAGCTCTTCTAGCCGCTTGCAAAGGCGCAGCT 4038
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 GAAAATGTTAGAGATGAAGTCATAGCTAAAGCTCTTCTAGCCGCTTGCAAAGGCGCAGCT 2025
Query 4039 GAACCTGTGCTCAACGCTTATGACCGATTATTATCCAATGCAGCTGTTGTGCCATCCCCA 4098
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 2026 GAACCTGTGCTCAACGCGTATGACCGTTTATTATCCAATGCAGCCGTTGTGCCACCCCCA 2085
Query 4099 AATCTAAGAATCCGCCTCCTTCGTTCAGTTCTAGTGGTACTCCGTGAATGGGCAATGTCT 4158
|||| |||||||| |||| ||| ||| ||| ||||||| |||||||||||||||||||||
Sbjct 2086 AATCCAAGAATCCTCCTCATTCATTCTGTTATAGTGGTGCTCCGTGAATGGGCAATGTCT 2145
Query 4159 GTATTGTCAGACAGAATGGGGTCGAGTCCAACCAGGTCTTCTCTGATACTAGGCGGCTCG 4218
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2146 GTATTGTCAGACAGAATGGGCTCGAGTCCAACCAGGTCTTCTCTAATACTAGGCGGCTCG 2205
Query 4219 TTTGCGCTAGAGAACAAAGCTGCTCTTAACCAAGGGG-CACGTGATAAGATTGCAAACGC 4277
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2206 TTTGCGCTAGAGAACAAAGCTGCTCTTAACCAAGGGGTC-CGTGATAAGATTGCAAACGC 2264
Query 4278 TGCAAACA 4285
||||||||
Sbjct 2265 TGCAAACA 2272
Score = 254 bits (137), Expect = 6e-66
Identities = 155/163 (95%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 1667 GAAGACTTCTGGAATCCAACTCTCCAAGGTCCCTTCTAGAAGATTTTTTCACCCGCTTTG 1726
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 GAAGACTTCTGGAGTCCAATTCTCCAAGGTCCCTTCTAGAAGATTTTTTCACCCGCTTTG 1463
Query 1727 GAGTAGGCGAAGCAGCTGCCATGTGCTTGATGTTAGCTGCCCGGATAATAAATTTTGAAG 1786
||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 1464 GAGCAGGCGAAGCAGCTGCCA--TG--TGATGTTGGCTGCCCGGATAATAAATTTTGAAG 1519
Query 1787 ATTTAATTAGTAACATTGTTGCCGATAAAGCAGCTGAGGCTTT 1829
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 ATTTAATTAGTAACATTGTTGCCGATAAAGCAGCTGAGGCTTT 1562
Score = 187 bits (101), Expect = 6e-46
Identities = 103/104 (99%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 863 CTCTTAAGAAGGTGGCAGAAGAAAGGAATCTATTAAATCAGAAGGATTTGAGCCAAGGAA 922
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 686 CTCTTAAGAAGGTGGCAGAAGAAAGGAATCTATTAAATCAGAAGGATGTGAGCCAAGGAA 745
Query 923 ATCGTCAGTCAGCAGTGGCAGGTCGATCTAACAAGCCATCCATA 966
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 ATCGTCAGTCAGCAGTGGCAGGTCGATCTAACAAGCCATCCATA 789
Score = 176 bits (95), Expect = 1e-42
Identities = 106/111 (95%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 4286 GGTATATGACAGAGGTTAGGAGACTAGCTCTGCCACCGAACAAGACGGATG-GTGTATAC 4344
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 2306 GGTATATGACAGAGGTTAGGAGACTGGCTCTGCCACCGAACAAGACGGA-GAATGTATAC 2364
Query 4345 GCAGGTTTTAAAGAACTTGACGAGTCTCTCTTAAGTCCATTCTCCTTCTGA 4395
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 GCAGGTTTCAAAGAACTTGACGAGTCTCTCTTAAGTCCATTCTCCTTCTGA 2415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174798432789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5