BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14860.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471677 jgi|Araly1|471677|fgenesh2_kg.1__1631__AT1G14860.1 1229 0.0
Ahg935888 jgi|Araly1|935888|scaffold_500079.1 481 6e-135
Ahg911762 jgi|Araly1|911762|Al_scaffold_0001_2016 239 4e-62
> Ahg471677 jgi|Araly1|471677|fgenesh2_kg.1__1631__AT1G14860.1
Length=974
Score = 1229 bits (665), Expect = 0.0
Identities = 842/922 (91%), Gaps = 34/922 (4%)
Strand=Plus/Plus
Query 1 AACGCTTTTTGTCTTATCTCAAATC-TTTTGTTCACTCACCCCATCATAACTTCA-TAAC 58
|||||||||||||| ||| |||||| |||| ||||||||||||||| |||||||| |||
Sbjct 1 AACGCTTTTTGTCTCATCCCAAATCTTTTTTTTCACTCACCCCATCGTAACTTCATTAAT 60
Query 59 TCCTATCCAATCTTTGC-T-TA--TAACTATTATCAAACAATTCTTAACTTCGATCTC-T 113
||||||||||||||| | | || |||| | | ||||||||||||||||||||||||| |
Sbjct 61 TCCTATCCAATCTTTTCTTATAGTTAACCACTCTCAAACAATTCTTAACTTCGATCTCAT 120
Query 114 AACCTGCAAAAACATTCATTACAC-TCTTCAGATCCTCCTTCCC-TTTAGCCG-CCAAAG 170
||||||||||||||||| |||||| | |||||||||| |||||| |||||||| || |||
Sbjct 121 AACCTGCAAAAACATTCGTTACACTTGTTCAGATCCT-CTTCCCTTTTAGCCGTCC-AAG 178
Query 171 CAAAACCGTCATCGATCTCTCTTCTTTTATACAGTCAAAAATTAGATTCAGATTCTTCAA 230
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAAAACCGTGATCTCTCTCTCTTCTTTTATACAGTCAAAAATTAGATTCAGATTCTTCAA 238
Query 231 GAACTCTGTTTTTCTAGTAGCATGGTGTGTTTGGTCTCCCGTACGGGTCGTCAATCCCAA 290
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 239 GAACTCTGTTTTTCTAGTAGCATGGTTTGTTTGGTCTCTCGTACGGGTCGTCAATCCCAA 298
Query 291 AGATACAACAAGGGACGGCGTCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCG 350
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGATACAACAAGGGACGCCGTCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCG 358
Query 351 AGTGATGGCACAATTAGC-GACGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCA 409
|| ||||||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 359 AGCGATGGCACAATTA-CTGACGAATTTGAAGTTCTTGTTATATCATCACAGAAGGGTCA 417
Query 410 CGCTCTGATGTTCCCAAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCGTC 469
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 418 CGCTCTGATGTTCCCAAAGGGTGGTTGGGAGCTTGATGAAACTATAGAAGAAGCTGCATC 477
Query 470 AAGAGAATCTCTAGAAGAAGCTGGAGTTGTTGGAAACGTTGAGAGACAACTTGGAAAATG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAGAGAATCTCTAGAAGAAGCTGGAGTTGTTGGAAACGTTGAGAGACAACTTGGAAAATG 537
Query 530 GGATTTCTTAAGCAAAAGCAAAGGAACATTCTATGAAGGATTCATGTTCCCAATGCTTGT 589
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 538 GGATTTCTTAAGCAAAAGCAGAGGAACATTCTATGAAGGATTAATGTTCCCAATGCTTGT 597
Query 590 GAAAGAAGAGCTTGAGCTTTGGCCTGAACAACATCTTCGTCAAAGAATTTGGATGAAAGT 649
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 GAAAGAAGAGCTTGAGCTTTGGCCTGAACAACATCTTCGTCGAAGAATTTGGATGAAAGT 657
Query 650 TGATGAAGCAAGAGACGCTTGTAGAGATTGGTGGATGAAGGAAGCGTTAGATGTTTTGGT 709
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 GGATGAAGCAAGAGAAACTTGTAGAGATTGGTGGATGAAGGAAGCTTTAGATGTTTTGGT 717
Query 710 CCAAAGGCTTTCTTTACTATCATTGAAGCCTATGGAAGAAGACGAGAACC-TTCCACTGA 768
|||||||||||||| || ||||||||||||| ||||||||||| ||| || |||||||||
Sbjct 718 CCAAAGGCTTTCTTCACCATCATTGAAGCCTGTGGAAGAAGACAAGA-CCATTCCACTGA 776
Query 769 TCTCTATCTACTGATCaaaaaaaaaaCAATCAGACGTGTTCTTGATCACTTTGTATATAA 828
||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 777 TCTCTATCTGCTGA--AAAAA-----CAATCAGATGTGTTCTTGATCACTTTGTAAATAA 829
Query 829 CATCTTACGCCTGCCTTTCCATGAAGAGTCTACTCTACTGCTGCAGGAAAAGTATGTACA 888
||||| |||||| || |||| |||||||||| ||| ||||||||||||||||
Sbjct 830 CATCTCACGCCT---TT-CCATAAAGAGTCTACAA-ACTAA---AGGAAAAGTATGTACA 881
Query 889 G-TGA-AACTTT-AGGTGTGAA 907
| | | || ||| |||||||||
Sbjct 882 GATCACAAATTTTAGGTGTGAA 903
> Ahg935888 jgi|Araly1|935888|scaffold_500079.1
Length=590
Score = 481 bits (260), Expect = 6e-135
Identities = 396/462 (86%), Gaps = 8/462 (2%)
Strand=Plus/Plus
Query 252 ATGGTGTGTTTGGTC-TCCCGTACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCG 310
||||||||||||| | || || ||||||||||| | || ||||||||||| || || ||
Sbjct 37 ATGGTGTGTTTGG-CTTCTCGCACGGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCG 95
Query 311 TCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGA 370
||||||||| || ||| |||| |||||| ||||| | || | |||||| | ||| || ||
Sbjct 96 TCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTATCTAATGATGGTAAAATCAGTGA 155
Query 371 CGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCACG-CTCTGATGTTCCCAAAGG 429
||| | || ||||||||||| || || ||||| ||||||| || |||||||||| ||||
Sbjct 156 TGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGTCACGCCT-TGATGTTCCCTAAGG 214
Query 430 GTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCGTCAAGAGAATCTCTAGAAGAAG 489
|||| ||||||||||||||||||||||||||||| || |||||||||| ||| |||||||
Sbjct 215 GTGGATGGGAGCTTGATGAATCTGTAGAAGAAGCAGCTTCAAGAGAATGTCTTGAAGAAG 274
Query 490 CTGGAGTTGTTGGAAACGTTGAGAGAC-AACTTGGAAAATGGGATTTCTTAAGCAAAAGC 548
|||||||| |||| ||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 275 CTGGAGTTCTTGGCAACGTTGAGC-ACCAACTTGGAAAATGGGATTTTTTAAGCAAAAGC 333
Query 549 AAAGGAACATTCTATGAAGGATTCATGTTCCCAATGCTTGTGAAAGAAGAGCTTGAGCTT 608
| |||||||| ||||||||| || |||||||| |||||||| | |||| | |||||||||
Sbjct 334 AGAGGAACATACTATGAAGGTTTAATGTTCCCTATGCTTGTTACAGAACAACTTGAGCTT 393
Query 609 TGGCCTGAACAACATCTTCGTCAAAGAATTTGGATGAAAGTTGAT-GAAGCAAGAGACGC 667
||||||||||||||| || | ||||||||||||||||| || | ||||||||||| ||
Sbjct 394 TGGCCTGAACAACATGTTAGGCAAAGAATTTGGATGAATGTA-ACCGAAGCAAGAGAAGC 452
Query 668 TTGTAGAGATTGGTGGATGAAGGAAGCGTTAGATGTTTTGGT 709
||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 453 TTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGT 494
> Ahg911762 jgi|Araly1|911762|Al_scaffold_0001_2016
Length=369
Score = 239 bits (129), Expect = 4e-62
Identities = 147/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 252 ATGGTGTGTTTGGTCTCCCGTACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGT 311
||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1 ATGATGTGTTTGGTCTCTCGTACGGGTTGTCAATCCCAAAGATACATCAAGGGACGGCGT 60
Query 312 CAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGAC 371
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AAAGTCGTTGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCAAT 120
Query 372 GAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGT 407
|||||||| |||||||||||||||||||||||||||
Sbjct 121 GAATTTGAAGTTCTTGTTATTTCATCACAAAAGGGT 156
Score = 200 bits (108), Expect = 2e-50
Identities = 132/144 (92%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 639 TGGATGAAAGTTGATGAAGCAAGAGACGCTTGTAGAGATTGGTGGATGAAGGAAGCGTTA 698
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 226 TGGATGAAAATTGATGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAGGAAGCTTTA 285
Query 699 GATGTTTTGGTCCAAAGGCTTTCTTTACTATCATTGAAGCCTATGGAAGAAGACGAGAAC 758
|||||||| ||||| ||||||| || || |||| |||||||||||||||||||| |||||
Sbjct 286 GATGTTTTAGTCCAGAGGCTTTATTCACCATCAGTGAAGCCTATGGAAGAAGACAAGAAC 345
Query 759 CTTCCACTGATCTCTATCTACTGA 782
|||||||||||||||||| ||||
Sbjct 346 ATTCCACTGATCTCTATCTGCTGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5