BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14860.1 Length=1128 Score E Sequences producing significant alignments: (Bits) Value Ahg471677 jgi|Araly1|471677|fgenesh2_kg.1__1631__AT1G14860.1 1229 0.0 Ahg935888 jgi|Araly1|935888|scaffold_500079.1 481 6e-135 Ahg911762 jgi|Araly1|911762|Al_scaffold_0001_2016 239 4e-62 > Ahg471677 jgi|Araly1|471677|fgenesh2_kg.1__1631__AT1G14860.1 Length=974 Score = 1229 bits (665), Expect = 0.0 Identities = 842/922 (91%), Gaps = 34/922 (4%) Strand=Plus/Plus Query 1 AACGCTTTTTGTCTTATCTCAAATC-TTTTGTTCACTCACCCCATCATAACTTCA-TAAC 58 |||||||||||||| ||| |||||| |||| ||||||||||||||| |||||||| ||| Sbjct 1 AACGCTTTTTGTCTCATCCCAAATCTTTTTTTTCACTCACCCCATCGTAACTTCATTAAT 60 Query 59 TCCTATCCAATCTTTGC-T-TA--TAACTATTATCAAACAATTCTTAACTTCGATCTC-T 113 ||||||||||||||| | | || |||| | | ||||||||||||||||||||||||| | Sbjct 61 TCCTATCCAATCTTTTCTTATAGTTAACCACTCTCAAACAATTCTTAACTTCGATCTCAT 120 Query 114 AACCTGCAAAAACATTCATTACAC-TCTTCAGATCCTCCTTCCC-TTTAGCCG-CCAAAG 170 ||||||||||||||||| |||||| | |||||||||| |||||| |||||||| || ||| Sbjct 121 AACCTGCAAAAACATTCGTTACACTTGTTCAGATCCT-CTTCCCTTTTAGCCGTCC-AAG 178 Query 171 CAAAACCGTCATCGATCTCTCTTCTTTTATACAGTCAAAAATTAGATTCAGATTCTTCAA 230 ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CAAAACCGTGATCTCTCTCTCTTCTTTTATACAGTCAAAAATTAGATTCAGATTCTTCAA 238 Query 231 GAACTCTGTTTTTCTAGTAGCATGGTGTGTTTGGTCTCCCGTACGGGTCGTCAATCCCAA 290 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 239 GAACTCTGTTTTTCTAGTAGCATGGTTTGTTTGGTCTCTCGTACGGGTCGTCAATCCCAA 298 Query 291 AGATACAACAAGGGACGGCGTCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCG 350 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 299 AGATACAACAAGGGACGCCGTCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCG 358 Query 351 AGTGATGGCACAATTAGC-GACGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCA 409 || ||||||||||||| | ||||||||||| ||||||||||| |||||||| |||||||| Sbjct 359 AGCGATGGCACAATTA-CTGACGAATTTGAAGTTCTTGTTATATCATCACAGAAGGGTCA 417 Query 410 CGCTCTGATGTTCCCAAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCGTC 469 |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || Sbjct 418 CGCTCTGATGTTCCCAAAGGGTGGTTGGGAGCTTGATGAAACTATAGAAGAAGCTGCATC 477 Query 470 AAGAGAATCTCTAGAAGAAGCTGGAGTTGTTGGAAACGTTGAGAGACAACTTGGAAAATG 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AAGAGAATCTCTAGAAGAAGCTGGAGTTGTTGGAAACGTTGAGAGACAACTTGGAAAATG 537 Query 530 GGATTTCTTAAGCAAAAGCAAAGGAACATTCTATGAAGGATTCATGTTCCCAATGCTTGT 589 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 538 GGATTTCTTAAGCAAAAGCAGAGGAACATTCTATGAAGGATTAATGTTCCCAATGCTTGT 597 Query 590 GAAAGAAGAGCTTGAGCTTTGGCCTGAACAACATCTTCGTCAAAGAATTTGGATGAAAGT 649 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 598 GAAAGAAGAGCTTGAGCTTTGGCCTGAACAACATCTTCGTCGAAGAATTTGGATGAAAGT 657 Query 650 TGATGAAGCAAGAGACGCTTGTAGAGATTGGTGGATGAAGGAAGCGTTAGATGTTTTGGT 709 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 658 GGATGAAGCAAGAGAAACTTGTAGAGATTGGTGGATGAAGGAAGCTTTAGATGTTTTGGT 717 Query 710 CCAAAGGCTTTCTTTACTATCATTGAAGCCTATGGAAGAAGACGAGAACC-TTCCACTGA 768 |||||||||||||| || ||||||||||||| ||||||||||| ||| || ||||||||| Sbjct 718 CCAAAGGCTTTCTTCACCATCATTGAAGCCTGTGGAAGAAGACAAGA-CCATTCCACTGA 776 Query 769 TCTCTATCTACTGATCaaaaaaaaaaCAATCAGACGTGTTCTTGATCACTTTGTATATAA 828 ||||||||| |||| ||||| |||||||| |||||||||||||||||||| |||| Sbjct 777 TCTCTATCTGCTGA--AAAAA-----CAATCAGATGTGTTCTTGATCACTTTGTAAATAA 829 Query 829 CATCTTACGCCTGCCTTTCCATGAAGAGTCTACTCTACTGCTGCAGGAAAAGTATGTACA 888 ||||| |||||| || |||| |||||||||| ||| |||||||||||||||| Sbjct 830 CATCTCACGCCT---TT-CCATAAAGAGTCTACAA-ACTAA---AGGAAAAGTATGTACA 881 Query 889 G-TGA-AACTTT-AGGTGTGAA 907 | | | || ||| ||||||||| Sbjct 882 GATCACAAATTTTAGGTGTGAA 903 > Ahg935888 jgi|Araly1|935888|scaffold_500079.1 Length=590 Score = 481 bits (260), Expect = 6e-135 Identities = 396/462 (86%), Gaps = 8/462 (2%) Strand=Plus/Plus Query 252 ATGGTGTGTTTGGTC-TCCCGTACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCG 310 ||||||||||||| | || || ||||||||||| | || ||||||||||| || || || Sbjct 37 ATGGTGTGTTTGG-CTTCTCGCACGGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCG 95 Query 311 TCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGA 370 ||||||||| || ||| |||| |||||| ||||| | || | |||||| | ||| || || Sbjct 96 TCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTATCTAATGATGGTAAAATCAGTGA 155 Query 371 CGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCACG-CTCTGATGTTCCCAAAGG 429 ||| | || ||||||||||| || || ||||| ||||||| || |||||||||| |||| Sbjct 156 TGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGTCACGCCT-TGATGTTCCCTAAGG 214 Query 430 GTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCGTCAAGAGAATCTCTAGAAGAAG 489 |||| ||||||||||||||||||||||||||||| || |||||||||| ||| ||||||| Sbjct 215 GTGGATGGGAGCTTGATGAATCTGTAGAAGAAGCAGCTTCAAGAGAATGTCTTGAAGAAG 274 Query 490 CTGGAGTTGTTGGAAACGTTGAGAGAC-AACTTGGAAAATGGGATTTCTTAAGCAAAAGC 548 |||||||| |||| ||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 275 CTGGAGTTCTTGGCAACGTTGAGC-ACCAACTTGGAAAATGGGATTTTTTAAGCAAAAGC 333 Query 549 AAAGGAACATTCTATGAAGGATTCATGTTCCCAATGCTTGTGAAAGAAGAGCTTGAGCTT 608 | |||||||| ||||||||| || |||||||| |||||||| | |||| | ||||||||| Sbjct 334 AGAGGAACATACTATGAAGGTTTAATGTTCCCTATGCTTGTTACAGAACAACTTGAGCTT 393 Query 609 TGGCCTGAACAACATCTTCGTCAAAGAATTTGGATGAAAGTTGAT-GAAGCAAGAGACGC 667 ||||||||||||||| || | ||||||||||||||||| || | ||||||||||| || Sbjct 394 TGGCCTGAACAACATGTTAGGCAAAGAATTTGGATGAATGTA-ACCGAAGCAAGAGAAGC 452 Query 668 TTGTAGAGATTGGTGGATGAAGGAAGCGTTAGATGTTTTGGT 709 ||||||||||||||||||||| ||||| |||||||||||||| Sbjct 453 TTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGT 494 > Ahg911762 jgi|Araly1|911762|Al_scaffold_0001_2016 Length=369 Score = 239 bits (129), Expect = 4e-62 Identities = 147/156 (94%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 252 ATGGTGTGTTTGGTCTCCCGTACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGT 311 ||| ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1 ATGATGTGTTTGGTCTCTCGTACGGGTTGTCAATCCCAAAGATACATCAAGGGACGGCGT 60 Query 312 CAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGAC 371 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 AAAGTCGTTGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCAAT 120 Query 372 GAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGT 407 |||||||| ||||||||||||||||||||||||||| Sbjct 121 GAATTTGAAGTTCTTGTTATTTCATCACAAAAGGGT 156 Score = 200 bits (108), Expect = 2e-50 Identities = 132/144 (92%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 639 TGGATGAAAGTTGATGAAGCAAGAGACGCTTGTAGAGATTGGTGGATGAAGGAAGCGTTA 698 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 226 TGGATGAAAATTGATGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAGGAAGCTTTA 285 Query 699 GATGTTTTGGTCCAAAGGCTTTCTTTACTATCATTGAAGCCTATGGAAGAAGACGAGAAC 758 |||||||| ||||| ||||||| || || |||| |||||||||||||||||||| ||||| Sbjct 286 GATGTTTTAGTCCAGAGGCTTTATTCACCATCAGTGAAGCCTATGGAAGAAGACAAGAAC 345 Query 759 CTTCCACTGATCTCTATCTACTGA 782 |||||||||||||||||| |||| Sbjct 346 ATTCCACTGATCTCTATCTGCTGA 369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42049577451 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5