BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14870.1
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911287 jgi|Araly1|911287|Al_scaffold_0001_1541 660 0.0
Ahg493614 jgi|Araly1|493614|fgenesh2_kg.7__3047__AT5G35525.1 660 0.0
Ahg911288 jgi|Araly1|911288|Al_scaffold_0001_1542 117 1e-25
> Ahg911287 jgi|Araly1|911287|Al_scaffold_0001_1541
Length=459
Score = 660 bits (357), Expect = 0.0
Identities = 425/459 (93%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 66 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 60
Query 126 TGTGATTGCTTTTCTGACTGCAAAAATTGTTGTATCACATTCTGGTGTCCATGTATCACC 185
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TGTGATTGCTTTTCTGACTGCAAAAACTGTTGTATCACATTCTGGTGTCCATGTATCACA 120
Query 186 TTTGGCCAAGTCGCCGAGATTGTAGATCGAGGATCCACATCGTGTGGTACTGCTGGAGCT 245
||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 TTTGGCCAAATCGCTGACATTGTAGATCGAGGATCCACTTCGTGTGGTACGGCTGGAGCT 180
Query 246 CTATACGCGTTGATAGCCGTAGTAACTGGTTGTGCATGTATATACTCATGTTTCTATCGT 305
|||||||||||| ||||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct 181 CTATACGCGTTGTTAGCCGTAGTAACTGGTTGTGGGTGTATCTACTCGTGCTTCTATCGT 240
Query 306 GGAAAGATGAGAGCTCAATATAATATTAAAGGAGATGATTGTACTGATTGCCTTAAACAT 365
||||||||||||||| || ||||||| ||| ||||||||| |||||||||||||||
Sbjct 241 CAAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTGGAGATTGCCTTAAACAT 300
Query 366 TTCTGCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTAC 425
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TCCTTCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTTC 360
Query 426 GATATGAGTCTTGGATGGGCGGGGAACGTGGAGAGACAACAGAATCAAGGAGGTGTGGCC 485
||||||| |||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 361 GATATGAATCTTGGATGGGCGGGGAACGTGGAAAGGCAACAGAACCAAGGAGGTGTGGTA 420
Query 486 ATGGGTGCTCCGGTCTTCCAAGGCGGCATGACCCGCTAA 524
||||||||||| | ||||||||| |||||||||||||||
Sbjct 421 ATGGGTGCTCCAGCCTTCCAAGGTGGCATGACCCGCTAA 459
> Ahg493614 jgi|Araly1|493614|fgenesh2_kg.7__3047__AT5G35525.1
Length=572
Score = 660 bits (357), Expect = 0.0
Identities = 445/487 (91%), Gaps = 8/487 (2%)
Strand=Plus/Plus
Query 66 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTC 125
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCGGAAGGAGAATGGTCCACAGGCTTC 60
Query 126 TGTGATTGCTTTTCTGACTGCAAAAATTGTTGTATCACAT-TCTGGTGTCCATGTATCAC 184
||||||||||| |||||||||||||| ||||||||||||| | || ||||||||||||||
Sbjct 61 TGTGATTGCTTCTCTGACTGCAAAAACTGTTGTATCACATGTTTG-TGTCCATGTATCAC 119
Query 185 CTTTGGCCAAGTCGCCGAGATTGTAGATCGAGGATCCACATCGTGTGGTACTGCTGGAGC 244
||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||||
Sbjct 120 ATTTGGCCAAGTCGCCGAGATTGTAGATCGAGGAACCACCTCATGTGGTGCTGCTGGAGC 179
Query 245 TCTATACGCGTTGATAGCCGTAGTAACTGGTTGTGCATGTATATACTCATGTTTCTATCG 304
|||||| |||||||||||||| ||||||||||||||||| | ||||| |||||||||||
Sbjct 180 ACTATACACGTTGATAGCCGTAATAACTGGTTGTGCATGTTTCTACTCGTGTTTCTATCG 239
Query 305 TGGAAAGATGAGAGCTCAATATAATATTAAAGGAGATGATTGTACTGATTGCCTTAAACA 364
|||||||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 240 TGGAAAGATGAGAGCTCAGTACAATATTAGAGGTGATGATTGTACTGATTGCCTTAAACA 299
Query 365 TTTCTGCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTA 424
|| || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 300 TTCCTTCTGTGAGCTTTGTTCTTTGACCCAAGAATACCGTGAACTCAAGCATCGCGGTTT 359
Query 425 CGATATGAGTCTTGGATGGGCGGGGAACGTGGAGAG--A----CAACAGAATCAAGGAGG 478
|||||||| |||||||||||||||||||||||| || | |||||||| || |||||
Sbjct 360 CGATATGAATCTTGGATGGGCGGGGAACGTGGAAAGGCAAGTGCAACAGAACCACGGAGG 419
Query 479 TGTGGCCATGGGTGCTCCGGTCTTCCAAGGCGGCATGACCCGCTAAGAATTATTTCTTTA 538
|||||| ||||||||||||| ||||||||||||||||||||||||||| || |||||| |
Sbjct 420 TGTGGCGATGGGTGCTCCGGCCTTCCAAGGCGGCATGACCCGCTAAGATTTGTTTCTTAA 479
Query 539 TGTAATT 545
||| |||
Sbjct 480 TGTCATT 486
> Ahg911288 jgi|Araly1|911288|Al_scaffold_0001_1542
Length=240
Score = 117 bits (63), Expect = 1e-25
Identities = 97/112 (87%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 438 GGATGGGCGGGGAACGTGGAGAGACAACAGAA-TCAAGGAGGTGTGGCCAT-GG-G--TG 492
|||||||||||||| | ||| || ||||| || ||| ||||||||||| || || | ||
Sbjct 130 GGATGGGCGGGGAATGCGGAAAGGCAACA-AACTCACGGAGGTGTGGCGATGGGTGCATG 188
Query 493 CTCCGGTCTTCCAAGGCGGCATGACCCGCTAAGAATTATTT-CTTTATGTAA 543
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 189 CTCCGGTCTTCCAAGGCGGCATGACCCGATAAGATTTATTTTCTTTATGTAA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27257885655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5