BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14890.1
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471678 jgi|Araly1|471678|fgenesh2_kg.1__1632__AT1G14890.1 1160 0.0
Ahg935881 jgi|Araly1|935881|scaffold_500072.1 147 2e-34
> Ahg471678 jgi|Araly1|471678|fgenesh2_kg.1__1632__AT1G14890.1
Length=903
Score = 1160 bits (628), Expect = 0.0
Identities = 797/875 (91%), Gaps = 25/875 (3%)
Strand=Plus/Plus
Query 1 CTCAATGTCTACATAAACCCTCCAATCTCACATGTTAACTCGAAACAAAGAAGAAATAAA 60
||||||| ||||||||||| ||||||||||||||| |||||| ||| ||||||||||
Sbjct 1 CTCAATGCCTACATAAACCTTCCAATCTCACATGTAAACTCGTAAC----AAGAAATAAA 56
Query 61 CAGAGTAAAAAAC-TTAAAGC-TTAAAATGGGGAGGCAGCTTTATACGACGACGGTTCTC 118
|||||| |||||| ||||| | |||||||||| || ||||||||||||||||| |||||
Sbjct 57 CAGAGTTAAAAACTTTAAA-CTTTAAAATGGGAAGTAAGCTTTATACGACGACGTTTCTC 115
Query 119 TACTTAGTCACCCTACTCTTCATTTGCCGGACAATCTCAGCCGTCCGTTTCCCTCCGGAA 178
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 116 TACTTAGTCACCTTACTCTTCATTTTCCGGACAATCTCAGCCGTCCGTTTCCCTCCGGCA 175
Query 179 CAACCAACAACCGATGATCTAGATTTCATCCGTACGAGCTGCAACACAACGCTGTATCCA 238
|| ||||||||||| || ||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 176 CAGCCAACAACCGACGACCTAGATTTCATCCGTACTAGCTGCAACGCAACGCTTTATCCA 235
Query 239 GACGTATGTTACACGTCTCTAGCTGGATACGCCTCCGCCGTCCAAGATAATCCGGCAAGG 298
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 236 GACGTATGTTTCACGTCTCTAGCTGGATACGCCTCCGCCGTCCAAGATAATCCGGCGAGA 295
Query 299 CTAGCTAAACTCGCAATCGGCGTTTCTCTCTCCCGCGCAAAATACACGGCGGCTTACCTC 358
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 296 CTAGCTAAACTGGCAATCGGCGTTTCCCTCTCCCGCGCAAAATACACGGCGGCTTACCTC 355
Query 359 TCCAAACTCTCACGTCGCGCTGCCTCAGCTGCTGTCCACGACTGCGTTTCGAACGTGGGA 418
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 356 TCCAAACTCTCACGTCGCGCTGCCTCAGCCGCCGTCCACGACTGCGTTTCGAACGTTGGA 415
Query 419 GATGCCGTGGATCAGATGCGTGGCTCCCTAAGGCAGCTCCGAGAGATGAACCACCGTCGT 478
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 416 GACGCCGTAGATCAGATGCGTGGCTCCCTAAGGCAGCTTCGAGAGATGAACCATCGTCGT 475
Query 479 CCCGGAGATCCGGCGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCG 538
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 CCCGGAGCGCCGGCTTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCTGCG 535
Query 539 TTGACGGACGAGGAGACGTGTACGGATGGGGTCACGGAGGAGATGGAAGACGGAGAGACG 598
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 536 TTGACGGACGAGGAGACGTGTACGGATGGGATCACGGAGGAGATGGAGGACGGAGAGACG 595
Query 599 AAGACGGCTATTTGCGATAGAGTCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTCGCT 658
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 596 AAGACGGCGATTTGCGATAGAGTCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTTGCT 655
Query 659 CTCGTTAATACCTACGCCAACAATGGAGCCTAA-CTAA-CTAAGCTAGGTCTTGAAATTC 716
|||||||| || || ||||| |||||||||||| | || |||||||||||||||||| |
Sbjct 656 CTCGTTAACACATATGCCAATAATGGAGCCTAAGCAAAGCTAAGCTAGGTCTTGAAAC-C 714
Query 717 CTAAAGTTATAAAAACACTTGTATATATATATGTGTTAAGTTGTGTGCTTAGTTTATAAT 776
||||||||||||||| ||||||||||||| |||| | | | | || ||| || |
Sbjct 715 CTAAAGTTATAAAAATACTTGTATATATA---GTGT---GCT-TA-G-TT--TTT-TA-T 761
Query 777 GTGTATTCGAGGCTTTGAAACCGAGTTAGAACTCTGAGTTTGG-GTGTTCAAATTATACA 835
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 762 GTGTATTCGAGGCTTTGAAACCGAGTTAGAACTCTGAGTTTTGTGTATTCAAATTATACA 821
Query 836 TTAATCTATGTTTGATTGTATTAATATTAATATAT 870
| |||||||||||| |||||||| |||| |||||
Sbjct 822 TAAATCTATGTTTGGTTGTATTAGTATTT-TATAT 855
> Ahg935881 jgi|Araly1|935881|scaffold_500072.1
Length=719
Score = 147 bits (79), Expect = 2e-34
Identities = 161/200 (81%), Gaps = 8/200 (4%)
Strand=Plus/Plus
Query 492 CGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCGTTGACGGACGAGG 551
|||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||
Sbjct 497 CGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGTGCAGCATTGACGGATGAGG 556
Query 552 AGACGTGTACGGATGGGGTCACGGAGGAGATGGAAGACGGAG-A--GACGAAGACGGCTA 608
| |||||||||||||| | | || | ||||| || |||| | || |||||| |
Sbjct 557 ACACGTGTACGGATGGATTT--GAAG-ATATGGACGAAGGAGGATTGATTAAGACGACCG 613
Query 609 TTTGCGATAGAG-TCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTCGCTCTCGTTAAT 667
|||| ||||| | ||| || || |||||||| ||||||||||| || || || || ||
Sbjct 614 TTTGTGATAG-GCTCGAGGAAGTGAAGAGGTTAACGAGTAATGCTCTTGCCCTTGTCAAC 672
Query 668 ACCTACGCCAACAATGGAGC 687
|| || ||||||||||||||
Sbjct 673 ACTTATGCCAACAATGGAGC 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35034960723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5