BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14900.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920393 jgi|Araly1|920393|scaffold_101674.1 913 0.0
> Ahg920393 jgi|Araly1|920393|scaffold_101674.1
Length=650
Score = 913 bits (494), Expect = 0.0
Identities = 608/661 (92%), Gaps = 16/661 (2%)
Strand=Plus/Plus
Query 60 ACACACTCTCTACGCTTGACATGGCCTTCGATCTCCACCATGGCTCAGCTTCAGATA--- 116
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1 ACACTCTCTCTACGCTTGACATGGCCTTCGATCTTCACCATAGCTCAGCTTCAGATACGC 60
Query 117 CGCATTCATCAGAACT-TCCGTCGTTTTCTCTCCCACCTTATCCTCAGATGATAATGGAA 175
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 CGCATTCATCAGAA-TCTCCGTCGTTTTCTCTCCCACCTTATCCTGAGATGATAATGGAA 119
Query 176 GCGATTGAGTCCTTGAACGATAAGAACGGCTGCAACAAAACGACGATTGCTAAGCACATC 235
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 GCGATTGAGTCCTTGAACGATAAGAATGGCTGCAACAAAACGACGATTGCTAAGCACATC 179
Query 236 GAGTCGACTCAACAAACTCTACCGCCGTCACACATGACGCTGCTCAGCTACCATCTCAAC 295
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 GAGTCAACTCAACAAACTCTACCGCCGTCACACACGACGCTGCTCAGCTACCATCTCAAC 239
Query 296 CAGATGAAGAA-AACCGGTCAGCTAATCATGGTGAAGAACAATTATATGAAACCAGATCC 354
||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 240 CAGATGAAGAAGAAT-GGTCAGCTTATCATGGTGAAGAACAATTATATGAAGCCAGATCC 298
Query 355 AGATGCTCCTCCTAAGCGTGGTCGTGGCCGTCCTCCGAAGCAGAAGACTCAGGCCGAATC 414
||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct 299 AGATGCTCCGCCTAAGCGTGGTCGTGGCCGTCCTCCGAAGCAGAAAATTCAGGCGGAATC 358
Query 415 TGACGCCGCTGCTGCTGCTGTTGTTGCTGCCACCGTCGTCTCTACAGATCCGCCTAGATC 474
||||||||| |||||||||| ||||| | || || | ||||||||||||||||
Sbjct 359 TGACGCCGCCGCTGCTGCTG------CTGCCGCTGTT-TC-CG-CAGATCCGCCTAGATC 409
Query 475 TCGTGGCCGTCCACCGAAGCCGAAAGATCCATCGGAGCCTCCCCAGGAGAAGGTCATTAC 534
||| || |||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 410 TCGCGGTCGTCCACCGAAGCCGAAAGATCCATCGGAGCCGCCTAAGGAGAAGGTCGCTAC 469
Query 535 CGGATCTGGAAGGCCACGAGGACGACCACCGAAGAGACCGAGAACAGATTCGGAGACGGT 594
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 470 CGGATCTGGAAGACCACGAGGACGACCACCGAAGAGATCGAGAACAGATTCGGAGACGGT 529
Query 595 TGCTGCGCCGGAACCGGCAGCTCAGGCGACAGGTGAGCGTAGGGGACGTGGGAGACCTCC 654
|||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 530 TGCTGCGCCGGAGCCGGCAGCTCAGGCAACCGGTGAGCGTAGAGGACGTGGGAGACCTCC 589
Query 655 GAAGGTGAAGCCGACGGTGGTTGCTCCGGTTGGGTGCTGAATTAATCGGTACTTATGCAA 714
|||||||||| ||||||||||||| ||||||||||| ||||||| || ||||||||||||
Sbjct 590 GAAGGTGAAGACGACGGTGGTTGCGCCGGTTGGGTGTTGAATTATTCAGTACTTATGCAA 649
Query 715 T 715
|
Sbjct 650 T 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5