BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14920.1
Length=2129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471680 jgi|Araly1|471680|fgenesh2_kg.1__1634__AT1G14920.1 2772 0.0
Ahg484073 jgi|Araly1|484073|fgenesh2_kg.5__65__AT2G01570.1 1122 0.0
> Ahg471680 jgi|Araly1|471680|fgenesh2_kg.1__1634__AT1G14920.1
Length=1959
Score = 2772 bits (1501), Expect = 0.0
Identities = 1798/1936 (93%), Gaps = 42/1936 (2%)
Strand=Plus/Plus
Query 78 TCCTAACCGATCCCCGAAGCTAAAGATTCTTCACCTTCCCAAATAAAGCAAAACCTAGAT 137
||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 59 TCCCAACCAATCCCCGAAGCTAAAGATTCTTCACCTTCCCAAATAAAGCTAAACCTAGAT 118
Query 138 CCGACATTGAAGGAAAAACCTTTTAGATCCATCTC-TGaaaaaaaaCCAACCATGAAGAG 196
||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 119 CCGACATTGAAGG-AAAACCTTTTAGATCCATCTCTTG----AAACCCAACCATGAAGAG 173
Query 197 AGatcatcatcatcatcatcatcaAGATAAGAAGAC--T-ATGATGATGAATGAAGAAGA 253
|||||||| | ||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 174 AGATCATC--C-TCAACATCATCAAGATAAGAAGACGATGATGATGATGAATGAAGAAGA 230
Query 254 CGACGGTAACGGCATGGATGAGCTTCTAGCTGTTCTTGGTTACAAGGTTAGGTCATCCGA 313
||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||
Sbjct 231 CGACGCTAACGGCATGGATGAGCTTTTAGCCGTTCTTGGTTACAAGGTGAGGTCATCGGA 290
Query 314 AATGGCTGATGTTGCTCAGAAACTCGAGCAGCTTGAAGTTATGATGTCTAATGTTCAAGA 373
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 291 AATGGCGGATGTTGCTCAGAAACTCGAGCAGCTTGAAGTTATGATGTCAAATGTTCAAGA 350
Query 374 AGACGATCTTTCTCAACTCGCTACTGAGACTGTTCACTATAATCCGGCGGAGCTTTACAC 433
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 351 AGACGATCTTTCTCAACTCGCTACTGAGACCGTTCACTACAATCCGGCGGAGCTTTACAC 410
Query 434 GTGGCTTGATTCTATGCTCACCGACCTTAATCCTCCGTCGTCTAACGCCGAGTACGATCT 493
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 411 GTGGCTTGATTCTATGCTTTCTGACCTCAATCCTCCGTCGTCTAACGCCGAGTACGATCT 470
Query 494 TAAAGCTATTCCCGGTGACGCGATTCTCAATCAGTTCGCTATCGATTCGGCTTCTTCGTC 553
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 471 TAAAGCTATTCCCGGTGACGCGATTCTGAATCAGTTCGCTATCGATTCGTCTTCTTCGTC 530
Query 554 TAACCAAGGCGGCGGAGGAGATACGTATACTACAAACAAGCGGTTGAAATGCTCAAACGG 613
|||||||||||||||| | |||| |||||||||||||||| ||||||| ||| |||||
Sbjct 531 GAACCAAGGCGGCGGAG-A--TACGAATACTACAAACAAGCGTTTGAAATACTCTAACGG 587
Query 614 CGTCGTGGAAACCACTACAGCGACGGCTGAGTCAACTCGGCATGTTGTCCTGGTTGACTC 673
|||||||| ||| || ||| ||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 588 CGTCGTGGCAACAACAACAACGACGGCTGAGTCAATTCGGCCTGTAGTCCTGGTTGACTC 647
Query 674 GCAGGAGAACGGTGTGCGTCTCGTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTTCAGAA 733
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 648 GCAGGAGAACGGTGTGCGTCTTGTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTGCAGAA 707
Query 734 AGAGAATCTGACTGTAGCGGAAGCTCTGGTGAAGCAAATCGGATTCTTAGCCGTTTCTCA 793
|||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 708 GGAGAATCTGACTCTAGCAGAAGCTCTGGTGAAGCAGATCGGATTCTTAGCTGTTTCTCA 767
Query 794 AATCGGAGCGATGAGAAAAGTCGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATTTA 853
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 768 AATCGGAGCAATGAGAAAAGTCGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATCTA 827
Query 854 CCGTCTCTCTCCGTCGCAGAGTCCAATCGACCACTCTCTCTCCGATACTCTTCAGATGCA 913
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 828 TCGTCTCTCTCCGTCGCAGAGTCCGATTGACCACTCTCTCTCCGATACTCTCCAGATGCA 887
Query 914 CTTCTACGAGACTTGTCCTTATCTCAAGTTCGCTCACTTCACGGCGAATCAAGCGATTCT 973
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 888 CTTCTACGAGACTTGTCCTTATCTCAAGTTCGCTCATTTCACGGCGAATCAAGCGATTCT 947
Query 974 CGAAGCTTTTCAAGGGAAGAAAAGAGTTCATGTCATTGATTTCTCTATGAGTCAAGGTCT 1033
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 948 CGAAGCTTTTCAAGGGAAGAAAAGAGTTCACGTCATTGATTTCTCTATGAGTCAAGGTCT 1007
Query 1034 TCAATGGCCGGCGCTTATGCAGGCTCTTGCGCTTCGACCTGGTGGTCCTCCTGTTTTCCG 1093
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1008 TCAATGGCCGGCGCTTATGCAGGCTCTCGCGCTTCGACCTGGTGGTCCTCCGGTTTTCCG 1067
Query 1094 GTTAACCGGAATTGGTCCACCGGCACCGGATAATTTCGATTATCTTCATGAAGTTGGGTG 1153
|||||||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1068 GTTAACCGGAATCGGTACACCGGCGCCGGATAATTTCGATTACCTTCACGAAGTTGGGTG 1127
Query 1154 TAAGCTGGCTCATTTAGCTGAGGCGATTCACGTTGAGTTTGAGTACAGAGGATTTGTGGC 1213
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1128 TAAGCTGGCTCATTTAGCGGAGGCGATTCATGTGGAGTTTGAGTACAGAGGATTTGTGGC 1187
Query 1214 TAACACTTTAGCTGATCTTGATGCTTCGATGCTTGAGCTTAGACCAAGTGAGATTGAATC 1273
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1188 TAACACTTTAGCTGATCTTGATGCGTCGATGCTTGAGCTTAGACCGAGTGAGATTGAATC 1247
Query 1274 TGTTGCGGTTAACTCTGTTTTCGAGCTTCACAAGCTCTTGGGACGACCTGGTGCGATCGA 1333
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 1248 TGTTGCGGTTAACTCTGTTTTCGAACTTCACAAGCTCTTAGGACAACCTGGTGCGATCGA 1307
Query 1334 TAAGGTTCTTGGTGTGGTGAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGA 1393
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TAAGGTTCTTGAAGTGGTGAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGA 1367
Query 1394 ATCGAACCATAATAGTCCGATTTTCTTAGATCGGTTTACTGAGTCGTTGCATTATTACTC 1453
||||||||| ||||||||| ||||||| || ||||||||||||||| |||||||||||||
Sbjct 1368 ATCGAACCACAATAGTCCGGTTTTCTTGGACCGGTTTACTGAGTCGCTGCATTATTACTC 1427
Query 1454 GACGTTGTTTGACTCGTTGGAAGGTGTACCGAGTGGTCAAGACAAGGTCATGTCGGAGGT 1513
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1428 GTCGTTGTTTGACTCGTTGGAAGGAGTGCCGAGTGGTCAAGACAAGGTCATGTCGGAGGT 1487
Query 1514 TTACTTGGGTAAACAGATCTGCAACGTTGTGGCTTGTGATGGACCTGACCGAGTTGAGCG 1573
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1488 TTATTTGGGTAAACAGATCTGCAACGTTGTGGCTTGTGATGGACCTGACAGAGTTGAGCG 1547
Query 1574 TCATGAAACGTTGAGTCAGTGGAGGAACCGGTTCGGGTCTGCTGGGTTTGCGGCTGCACA 1633
|| |||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1548 CCACGAAACGTTGAGTCAATGGAGGAACCGGTTCGGTTCTACTGGGTTTGCGGCGGCACA 1607
Query 1634 TATTGGTTCGAATGCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGTTCAACGGCGGTGA 1693
||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1608 TATCGGTTCGAATGCGTTTAAGCAAGCAAGCATGCTCTTGGCTCTGTTCAACGGCGGTGA 1667
Query 1694 GGGTTATCGGGTGGAGGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACACGACCGCT 1753
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1668 GGGTTATCGGGTGGAAGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACTCGGCCGCT 1727
Query 1754 CATAGCCACCTCGGCTTGGAAACTCTCCACCAATTAGATGGTGGCTCAATGAATTGATCT 1813
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1728 CATAGCCACCTCGGCTTGGAAACTCTCCACCAGTTAGATGGTGGCTCAATGAATTGATCA 1787
Query 1814 GTTGAACCGGTTATGATGATAGAT-TTCCGACCGAAGCCAAA-CTAAATCCTACTGTTTT 1871
||| | |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1788 GTTTA-CCGGTTATGATGATAGATGTTCCGACCGAA-CCAAAACTAAATCCTACTGTTTT 1845
Query 1872 TCCCTTTGTCACTTGTTAAGATCTTATCTTTCATTATATTAGGTAATTGAAAAATTTT-A 1930
|| ||||||||||||||||||||| | | || | | || || |||| |
Sbjct 1846 -CCTTTTGTCACTTGTTAAGATCTT-T-----A--AT-T--G--AA---AA---TTTTCA 1885
Query 1931 ATCTCGCTTTGGAGAGttttttttttttGCATGTGACATTGGAGGGTAAATTGGATAGGC 1990
|||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1886 ATCTCGCTTTCGAGAGTTTTTTTTGCAT--ATGTGACATTGGAGGGTAAATTGGATAGGC 1943
Query 1991 AGAAATAGAAGTATGT 2006
|||||||||| |||||
Sbjct 1944 AGAAATAGAATTATGT 1959
> Ahg484073 jgi|Araly1|484073|fgenesh2_kg.5__65__AT2G01570.1
Length=2133
Score = 1122 bits (607), Expect = 0.0
Identities = 977/1156 (85%), Gaps = 24/1156 (2%)
Strand=Plus/Plus
Query 637 CGGCTGAGTCAACTCG-GCATGTTGTCCTGGTTGACTCGCAGGAGAACGGTGTGCGTCTC 695
|||||||||||||||| || |||| ||||||||||||| || ||||||||||| ||| |
Sbjct 730 CGGCTGAGTCAACTCGTGC-TGTTATCCTGGTTGACTCACAAGAGAACGGTGTTCGTTTA 788
Query 696 GTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTTCAGAAAG-AGAATCTGACTGTAGCGGA 754
|||||||||||| ||||||| |||||||| | ||| || | ||| ||||| |||||||
Sbjct 789 GTTCACGCGCTTATGGCTTGTGCTGAAGCAATCCAG-CAGAACAATTTGACTCTAGCGGA 847
Query 755 AGCTCTGGTGAAGCAAATCGGATTCTTAGCCGTTTCTCAAATCGGAGCGATGAGAAAAGT 814
|||||| |||||||||||||||| |||||| || || ||| |||||| |||||||||||
Sbjct 848 AGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCACAAGCCGGAGCTATGAGAAAAGT 907
Query 815 CGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATTTACCGTCTCTCTCCGTCGCAGAG 874
||||||||| |||||||||||||| || |||||||| ||||| ||||||||| ||||||
Sbjct 908 CGCTACTTATTTCGCCGAAGCTCTTGCACGGCGGATCTACCGCCTCTCTCCGCCGCAGAA 967
Query 875 TCCAATCGACCACTCTCTCTCCGATACTCTTCAGATGCACTTCTACGAGACTTGTCCTTA 934
|| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 968 TCAAATCGACCATTCTCTCTCCGATACTCTTCAGATGCACTTTTATGAGACTTGTCCTTA 1027
Query 935 TCTCAAGTTCGCTCACTTCACGGCGAATCAAGCGATTCTCGAAGCTTTTCAAGGGAAGAA 994
||| || ||||||||||| |||||||||||||||||||| ||||||||| |||| |||||
Sbjct 1028 TCTTAAATTCGCTCACTTTACGGCGAATCAAGCGATTCTTGAAGCTTTTGAAGGTAAGAA 1087
Query 995 AAGAGTTCATGTCATTGATTTCTCTATGAGTCAAGGTCTTCAATGGCCGGCGCTTATGCA 1054
|||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 1088 GAGAGTTCATGTCATTGATTTTTCTATGAACCAAGGTCTTCAATGGCCTGCGCTTATGCA 1147
Query 1055 GGCTCTTGCGCTTCGACCTGGTGGTCCTCCTGTTTTCCGGTTAACCGGAATTGGTCCACC 1114
||||||||||||||| || |||||||| |||||||||||||||||||||||| ||
Sbjct 1148 AGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAACCGGAATTGGTCCGCC 1207
Query 1115 GGCACCGGATAATT-TCGATTATCTTCATGAAGTTGGGTGTAAGCTGGCTCAT-TTAGCT 1172
||| |||||||||| | ||| ||||||| || ||||| ||||| | ||||| || ||
Sbjct 1208 GGCGCCGGATAATTCT-GATCATCTTCACGACGTTGGCTGTAAATTAGCTCAGCTT-GCG 1265
Query 1173 GAGGCGATTCACGTTGAGTTTGAGTACAGAGGATTTGTGGCTAACA-CTTTAGCTGATCT 1231
|||| |||||||||||| || || ||| | ||||| || ||||||| ||| ||| |||||
Sbjct 1266 GAGGTGATTCACGTTGAATTCGAATACCGTGGATTCGTCGCTAACAGCTT-AGCCGATCT 1324
Query 1232 TGATGCTTCGATGCTTGAGCTTAGACCAAGTGAGATTGAATCTGTTGCGGTTAACTCTGT 1291
|||||| ||||||||||| |||||||| ||||||| ||| |||||||||| ||||||||
Sbjct 1325 TGATGCGTCGATGCTTGAACTTAGACCGAGTGAGACGGAAGCTGTTGCGGTGAACTCTGT 1384
Query 1292 TTTCGAGCTTCACAAGCTCTTGGGACGACCTGGTGCGATCGATAAGGTTCTTGGTGTGGT 1351
||||||||| || || ||||| || || || |||| ||| || || ||||| || || ||
Sbjct 1385 TTTCGAGCTCCATAAACTCTTAGGTCGTCCCGGTGGGATAGAGAAAGTTCTCGGCGTTGT 1444
Query 1352 GAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGAATCGAACCATAATAGTCC 1411
||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| | ||
Sbjct 1445 GAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGAACCATAACGGACC 1504
Query 1412 GATTTTCTTAGATCGGTTTACTGAGTCGTTGCATTATTACTCGACGT-TGTTTGACTCGT 1470
| |||||||||| ||||||||||| ||||| ||||| || ||||| | ||||||| ||||
Sbjct 1505 GGTTTTCTTAGACCGGTTTACTGAATCGTTACATTACTATTCGAC-TCTGTTTGATTCGT 1563
Query 1471 TGGAAGGTGTACCGAGTGGTCAAGACAAGGTCATGTCGGAGGTTTACTT-GGGTAAACAG 1529
||||||| || |||||| | |||||||| |||||||| || |||||||| ||| ||||||
Sbjct 1564 TGGAAGGAGTTCCGAGTAGCCAAGACAAAGTCATGTCCGAAGTTTACTTAGGG-AAACAG 1622
Query 1530 ATCTGCAA-CGTTGTGGCTTGTGATGGACCTGACCGAGTTGAGCGTCATGAAACGTTGAG 1588
|| ||||| | ||||||||||||| || |||||||| || ||| | ||||||||| ||||
Sbjct 1623 ATTTGCAATC-TTGTGGCTTGTGAAGGTCCTGACCGGGTCGAGAGGCATGAAACGCTGAG 1681
Query 1589 TCAGTGGAGGAA-CCGGTTCGGGTC-TGCTGGGTTTGCGGCTGCACATATTGGTTCGAAT 1646
||| ||| |||| |||||| || || | | || |||||| | ||| || | || || ||
Sbjct 1682 TCAATGG-GGAAACCGGTTTGGTTCGTCC-GGTTTTGCGCCGGCAAATCTCGGGTCTAAC 1739
Query 1647 GCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGT-TCAACGGCGGTGAGGGTTATCGGGT 1705
||||||||||||||||||||||||||| | ||| | || | || | |||||||| ||
Sbjct 1740 GCGTTTAAGCAAGCGAGTATGCTTTTGTCAGTGTAT-AATAGTGGCCAAGGTTATCGTGT 1798
Query 1706 GGAGGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACACGACCGCTCAT-AGCCACCT 1764
|||||||| | | || ||| | ||||||||||||||||| || |||||||| | ||||||
Sbjct 1799 GGAGGAGAATAATGGATGTTTGATGTTGGGTTGGCACACTCGCCCGCTCATTA-CCACCT 1857
Query 1765 CGGCTTGGAAACTCTC 1780
| ||||||||||||||
Sbjct 1858 CCGCTTGGAAACTCTC 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80103785235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5