BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14930.1
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312489 jgi|Araly1|312489|fgenesh1_pm.C_scaffold_1001269 688 0.0
> Ahg312489 jgi|Araly1|312489|fgenesh1_pm.C_scaffold_1001269
Length=468
Score = 688 bits (372), Expect = 0.0
Identities = 437/469 (93%), Gaps = 2/469 (0%)
Strand=Plus/Plus
Query 50 ATGGCGATGTCAGGAAAATACGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACAC 109
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATGTCAGGAACATATGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACAC 60
Query 110 TACAGGCGATGGAGGAGCCAAAACAATCTCTTCCCGGACGCCATCGGCCACCATGTCCAA 169
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TATAGGAGATGGAGGAGCCAAAACAACCTCTTCCCGGACGCCATCGGCCACCATGTCCAA 120
Query 170 GGCGTCACCGTCCACGATGGCGACTGGGACTCCCACGGCTCCATCAAATCCTGGAACTAC 229
|| |||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||
Sbjct 121 GGTGTCACCGTCCACGACGGCGACTGGAAATCCCACGGTTCCATCAAATCCTGGAACTAC 180
Query 230 ACACTTGATGGGAAGCCGGAAGTCATCAAGGAGAAAAGAGAGATAGACGACGAGAAGATG 289
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 ACACTCGATGGGAAGCCGGAAGTCATCAAGGAGAAGAGAGATATAGACGACGAGAAGATG 240
Query 290 GCGTTGACGTTCAGAGGACTAGAGGGTCATGTGATGGAGAAGTACAAGAAGTATGAGGTT 349
|| ||||||||||||||||||||||| || ||||||||| |||||||| |||| | ||
Sbjct 241 GCATTGACGTTCAGAGGACTAGAGGGGCACGTGATGGAGCAGTACAAGGTGTATAACGTC 300
Query 350 ATCTTACAGTTCATTCCCAAGTCGAACGAAGGCTGCGTCTGCAAAGTCACTCTGATATGG 409
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AACTTACAGTTCATTCCCAAGTCGAAGGAAGGCTGCGTCTGCAAAGTCACTCTGATATGG 360
Query 410 GAGAATCGCAACGAAGACTCCCCCGAACCCA-TCAACTACATGAAGTTTGTCAAGAGCTT 468
||||| ||||| ||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 361 GAGAAGCGCAAGGAAGACTCCCCCGAACC-AGTCAACTACGTGAAGTTTGTCAAGAGCTT 419
Query 469 AGTTGCTGATATGGATGACCACATCCTCAAGGGCCAGAACAAAGCTTAA 517
||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 420 AGTTGCTGACATGGACGACCACGTCCTCAAGGGCCAGAACAAAGCTTAA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26457304398
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5