BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14950.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471683 jgi|Araly1|471683|fgenesh2_kg.1__1637__AT1G14950.1 854 0.0
> Ahg471683 jgi|Araly1|471683|fgenesh2_kg.1__1637__AT1G14950.1
Length=685
Score = 854 bits (462), Expect = 0.0
Identities = 526/557 (94%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 71 ATTTGCATAAACACTTTCAAAAACAAGTAATCAAAAG-TATTTTAGAAGCTTCATCATGG 129
||| ||||||||||| ||||| ||||||||||||||| | ||||||||||| ||||||||
Sbjct 1 ATTGGCATAAACACTCTCAAAGACAAGTAATCAAAAGCT-TTTTAGAAGCTCCATCATGG 59
Query 130 CGACGTCAGGTACATACGTGACAGAAGTTCCTCTGAAAGGGTCAGCGAAGAACCACTACA 189
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 CGACGTCAGGAACATACGTGACAGAAGTTCCTCTGAAAGGGTCGGCGAAGAACCACTACA 119
Query 190 AGAGGTGGAAGAGCGAAAACCAACTCTTCCCTGACGCCATTGGCCATCATATCCAAGGTG 249
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 120 AGAGGTGGAAGAGCGAAAACCAACTCTTCCCGGAAGCCATTGGCCATCACATCCAAGGTG 179
Query 250 TCACCGTTCACGAGGGCGACTGGGACTCCCACGGGGCCATCAAGTCCTGGAACTACACAT 309
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 180 TCACCGTTCACGAGGGCGACTGGGACTCCCACGGGGCCATTAAGTCGTGGAACTACACAT 239
Query 310 GCGATGGGAAGCAAGAGGTGTTCAAGGAGAAGAGGGAGTTAGACGACCAGAAGATGGCGG 369
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 240 GCGATGGGAAGCAAGAGGTGTTCAAGGAGAAGAGGGAGTTAGACGACGAGAAGATGGCTG 299
Query 370 TGACGTTTAGAGGGCTGGATGGTCATGTGATGGAGCAGCTTAAGGTGTATGACGTCATCT 429
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 300 TGACGTTTAGAGGGCTGGATGGTCACGTGATGGAGCAGCTTAAGGTGTATGATGTCATCT 359
Query 430 TCCAATTCGTCCCTAAGTCTCAGGAAGGTTGCGTCTGCAAAGTCACTATGTTTTGGGAGA 489
|||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 TCCAGTTCATCCCCAAGTCTCAGGAAGGTTGCGTCTGCAAAGTCACTATGATTTGGGAGA 419
Query 490 AGCGCTACGAAGACTCTCCAGAGCCCATCAAGTACATGAAGTTCGTCACGAGCTTGGCTG 549
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 AGCGCTACGAAGACTCTCCGGAGCCAATCAAGTACATGAAGTTCGTCACGAGCTTGGCTG 479
Query 550 CTGACATGGATGACCACATTCTCAAGAACCAGAGCAAGGCTTAATCATCATAGTGACCAT 609
|||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 480 CTGATATGGACGACCACATTCTCAAGAACCAGAACAAGGCGTAATCATCATAGTGATCAT 539
Query 610 ACTT-ATGAAGATAAAA 625
||| | ||||||||||
Sbjct 540 -CTTTAAGAAGATAAAA 555
Score = 154 bits (83), Expect = 1e-36
Identities = 115/130 (88%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 657 TGTGTGTCGTTTGTGTTTGTCTTGTACAT-GATGA--AACCGCCTCCTTGTCTTGTGTAC 713
||||| || ||||||||||||| ||| || | ||| | |||||||||| ||||||||||
Sbjct 556 TGTGTCTCTTTTGTGTTTGTCTCGTAGATGGGTGATCATCCGCCTCCTTTTCTTGTGTAC 615
Query 714 ATTTTATGCTGATAATAATGGCGGTACGTCTTGTAAACTTATGCATGTATCATCTCTGTC 773
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||
Sbjct 616 ATTTTATGCTGATAATAATGGCGGTTTGTCTTGTAAGCTTATGTATGTATCATCTCGGTC 675
Query 774 TTTGATGATT 783
||||||||||
Sbjct 676 TTTGATGATT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5