BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G14950.1 Length=845 Score E Sequences producing significant alignments: (Bits) Value Ahg471683 jgi|Araly1|471683|fgenesh2_kg.1__1637__AT1G14950.1 854 0.0 > Ahg471683 jgi|Araly1|471683|fgenesh2_kg.1__1637__AT1G14950.1 Length=685 Score = 854 bits (462), Expect = 0.0 Identities = 526/557 (94%), Gaps = 4/557 (1%) Strand=Plus/Plus Query 71 ATTTGCATAAACACTTTCAAAAACAAGTAATCAAAAG-TATTTTAGAAGCTTCATCATGG 129 ||| ||||||||||| ||||| ||||||||||||||| | ||||||||||| |||||||| Sbjct 1 ATTGGCATAAACACTCTCAAAGACAAGTAATCAAAAGCT-TTTTAGAAGCTCCATCATGG 59 Query 130 CGACGTCAGGTACATACGTGACAGAAGTTCCTCTGAAAGGGTCAGCGAAGAACCACTACA 189 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 60 CGACGTCAGGAACATACGTGACAGAAGTTCCTCTGAAAGGGTCGGCGAAGAACCACTACA 119 Query 190 AGAGGTGGAAGAGCGAAAACCAACTCTTCCCTGACGCCATTGGCCATCATATCCAAGGTG 249 ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 120 AGAGGTGGAAGAGCGAAAACCAACTCTTCCCGGAAGCCATTGGCCATCACATCCAAGGTG 179 Query 250 TCACCGTTCACGAGGGCGACTGGGACTCCCACGGGGCCATCAAGTCCTGGAACTACACAT 309 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 180 TCACCGTTCACGAGGGCGACTGGGACTCCCACGGGGCCATTAAGTCGTGGAACTACACAT 239 Query 310 GCGATGGGAAGCAAGAGGTGTTCAAGGAGAAGAGGGAGTTAGACGACCAGAAGATGGCGG 369 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 240 GCGATGGGAAGCAAGAGGTGTTCAAGGAGAAGAGGGAGTTAGACGACGAGAAGATGGCTG 299 Query 370 TGACGTTTAGAGGGCTGGATGGTCATGTGATGGAGCAGCTTAAGGTGTATGACGTCATCT 429 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 300 TGACGTTTAGAGGGCTGGATGGTCACGTGATGGAGCAGCTTAAGGTGTATGATGTCATCT 359 Query 430 TCCAATTCGTCCCTAAGTCTCAGGAAGGTTGCGTCTGCAAAGTCACTATGTTTTGGGAGA 489 |||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 360 TCCAGTTCATCCCCAAGTCTCAGGAAGGTTGCGTCTGCAAAGTCACTATGATTTGGGAGA 419 Query 490 AGCGCTACGAAGACTCTCCAGAGCCCATCAAGTACATGAAGTTCGTCACGAGCTTGGCTG 549 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 420 AGCGCTACGAAGACTCTCCGGAGCCAATCAAGTACATGAAGTTCGTCACGAGCTTGGCTG 479 Query 550 CTGACATGGATGACCACATTCTCAAGAACCAGAGCAAGGCTTAATCATCATAGTGACCAT 609 |||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||| ||| Sbjct 480 CTGATATGGACGACCACATTCTCAAGAACCAGAACAAGGCGTAATCATCATAGTGATCAT 539 Query 610 ACTT-ATGAAGATAAAA 625 ||| | |||||||||| Sbjct 540 -CTTTAAGAAGATAAAA 555 Score = 154 bits (83), Expect = 1e-36 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 657 TGTGTGTCGTTTGTGTTTGTCTTGTACAT-GATGA--AACCGCCTCCTTGTCTTGTGTAC 713 ||||| || ||||||||||||| ||| || | ||| | |||||||||| |||||||||| Sbjct 556 TGTGTCTCTTTTGTGTTTGTCTCGTAGATGGGTGATCATCCGCCTCCTTTTCTTGTGTAC 615 Query 714 ATTTTATGCTGATAATAATGGCGGTACGTCTTGTAAACTTATGCATGTATCATCTCTGTC 773 ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| ||| Sbjct 616 ATTTTATGCTGATAATAATGGCGGTTTGTCTTGTAAGCTTATGTATGTATCATCTCGGTC 675 Query 774 TTTGATGATT 783 |||||||||| Sbjct 676 TTTGATGATT 685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31260791940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5