BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14960.1
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471684 jgi|Araly1|471684|fgenesh2_kg.1__1638__AT1G14960.1 804 0.0
> Ahg471684 jgi|Araly1|471684|fgenesh2_kg.1__1638__AT1G14960.1
Length=594
Score = 804 bits (435), Expect = 0.0
Identities = 553/608 (91%), Gaps = 15/608 (2%)
Strand=Plus/Plus
Query 61 AAAAAACAATCCAAAGCTAATTGATTCATCAATGGCGATGTCGGGAACATACGTGACGGA 120
||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1 AAAAAACGATCGAAAGCTAATTAATTCATCAATGGCGATGTCAGGAACATACGTGACGGA 60
Query 121 TGTGCCTCTTAAGGGATCGGCGGAGAAACACTATAAGAGGTGGAGGAGCGAGAACCACCT 180
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 61 TGTGCCTCTGAAGGGATCGGCGGAGAAACACTACAAGAGGTGGAGGAGCGAGAACCATCT 120
Query 181 CGTCCCTGAAGCTATCGGCCACCTCATCCAAGGTGTCACCGTCCATGACGGCGATTGGGA 240
| |||||| || || ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 121 CACCCCTGACGCCATTGGCCACCTCATCCAAGGTGTCACCGTCCACGAAGGCGATTGGGA 180
Query 241 CTCTCACGGCACCATCAAAATCTGGAACTACACTCGTGATGGGAAAGAGGAAGTATTGAA 300
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCACACGGAACCATCAAAATATGGAACTACACTCGTGATGGGAAAGAGGAAGTATTGAA 240
Query 301 GGAGAGGATAGAGATGGACGACGAGAATATGGCGGTGACGATCAATGGACTCGATGGTCA 360
||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 241 GGAGAGGATAGAGATCGACGACGAGAATATGGCGGTAACGATTAATGGGCTCGATGGTCA 300
Query 361 CGTCATGGAGGTCCTCAAGGTTTATGTCACGACGTTACATTTCATCCCCGAGTCCAAAGA 420
|||||||||| | || ||||| ||||| || || || || ||||||||||||| | ||||
Sbjct 301 CGTCATGGAGTTGCTTAAGGTGTATGTTACAACCTTCCACTTCATCCCCGAGTTCGAAGA 360
Query 421 TGGCTGCGTCTGCAAAATTACTATGGTCTGGGAGAAACGCACCGAAGACTCCCCAGAGCC 480
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 361 TGGCTGCGTCTGCAAAATTACTATGATTTGGGAGAAACGCACCGAAGACTCCCCAGAGCC 420
Query 481 CATCGAATTCATGAAGTTCGTGGA-ACAGATGATTGCTCACATGGACGACCACATCCTCC 539
|||||| ||||||||||| || || | ||||||||||| |||||||||||||||||||||
Sbjct 421 CATCGAGTTCATGAAGTTTGTCGAGA-AGATGATTGCTGACATGGACGACCACATCCTCC 479
Query 540 AAAACCAGGAATGATGGATCGATGCTTAATCATCATCACATCCTCCTTTTATTTATCTTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 480 AAAACCAGGAATGATGGATCGATGCTTAATCATCATCACATCCTCCTTTTA---AT-TT- 534
Query 600 ATTAATGTGTGTCCATCTCGTACATGATATTAATATCATCATGGTGTTGTATGTCCAACG 659
|||| |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 535 ------GTGT--CCATCTTGTACATGATATTAATATCGTCATGGTGTTGTATGTCCAACG 586
Query 660 TTTATTTA 667
||||||||
Sbjct 587 TTTATTTA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25275493971
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5