BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14970.1
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471685 jgi|Araly1|471685|fgenesh2_kg.1__1639__AT1G14970.1 3025 0.0
Ahg484066 jgi|Araly1|484066|fgenesh2_kg.5__58__AT2G01480.1 1526 0.0
> Ahg471685 jgi|Araly1|471685|fgenesh2_kg.1__1639__AT1G14970.1
Length=1823
Score = 3025 bits (1638), Expect = 0.0
Identities = 1767/1829 (97%), Gaps = 10/1829 (1%)
Strand=Plus/Plus
Query 1 ATGATTTCCCAGGTGGAGAGAGATCTGTCGATTCAAAATCGGCTTCCGGGAAGCGATCAC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGATTTCCCAGGTGGAGAGAGATCTGTCGATTCAAAATCGGCTTCCGGTAAGCGATCAC 60
Query 61 ACTACTCCTTCTCCGCCAACATCTCCTCATCTCTGCCGGAGCCGGTCGAAATCCTCCTCT 120
||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||| |
Sbjct 61 ACTACCCCTTCTCCGCCGACGTCTCCTCATCTCTGCCGGAGCCGGTCTAAATCCTCCGC- 119
Query 121 GTCTCCGGGCAACAGCAAAGTCGGAACGTCGCTCACCGTCTCTCATGGATCATTTTATCT 180
| |||| ||||||||||| |||| |||||||||||||||||| |||||| |||||||
Sbjct 120 -T-TCCGTACAACAGCAAAGCCGGACCGTCGCTCACCGTCTCTCGTGGATCCTTTTATCG 177
Query 181 GTTCTTCTCCGGCGTCAGGGAATTCTCCTT-TTCGCTCCTATCATCTACATCTCCTGTAT 239
|||||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||
Sbjct 178 GTTCTTCTCCGGCGTCAGGGAATTCT-CTTATTCGCTCCTCTCATCTACGTCTCCTGTAT 236
Query 240 GCTTTTTCACCTACACGCGGCGTCGTTTGATGCCTCTCCCATTATCCACCGCCGTCCTGC 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 GCTTTTTCACCTACACGCGGCGTCGTTTGATGCCTCACCCATTATCCACCGCCGTCCTGC 296
Query 300 TCCGGGATCCGTCTACCGGAGCCCTCAGGTTTACGCTAGGCTTCGCGGCGAGATTGAAGC 359
||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 TCCGGGATCTGTCTATAGAAGCCCTCAGGTTTACGCTAGGCTTCGCGGCGAGATTGAGGC 356
Query 360 CGATAATACCACGGCTGATGCGATATCAACAATTTGGAAGCGTTCCTATAAAGGTGTAGA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGATAATACCACGGCTGATGCGATATCAACAATTTGGAAGCGTTCCTATAAAGGTGTAGA 416
Query 420 ATGGAAGCCATGTGTGAACATGTCTACTGGAGTTTTACCTGTGTCAAATGGTTTCATATT 479
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 417 ATGGAAGCCATGTGTGAACAAATCTACTGGAGTTTTACCTGAGTCTAATGGTTTCATATT 476
Query 480 TATTGAGGCAAATGGAGGCTTGAATCAGCAGCGGACTTCGATATGCAATGCGGTTGCTGT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CATTGAGGCAAATGGAGGCTTGAATCAGCAGCGGACTTCGATATGCAATGCGGTTGCTGT 536
Query 540 GGCAGGCTACCTTAATGCGACCCTTGTAATTCCCAACTTTCACTATCACAGCATATGGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGCAGGCTACCTTAATGCGACCCTTGTAATTCCCAACTTTCACTATCACAGCATATGGAA 596
Query 600 AGATCCGAGTAAATTTGGGGACATCTATGATGAAGAGTACTTTATCGATACCTTAGCAAA 659
||||||||| ||||||||||||||||||||||| || |||||| | ||||||||||||||
Sbjct 597 AGATCCGAGCAAATTTGGGGACATCTATGATGAGGAATACTTTGTTGATACCTTAGCAAA 656
Query 660 TGATGTGCGGGTGGTCGATACAGTTCCTGAATACTTGATGGAGCGTTTTGACTATAACTT 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 TGATGTGCGGGTGGTCGATACAGTTCCTGAATACTTAATGGAGCGTTTTGACTATAACTT 716
Query 720 GACAAATGTCTACAACTTCAGAGTTAAAGCATGGGCACCCACCTCCTATTACCGGGACTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GACAAATGTCTACAACTTCAGAGTTAAAGCATGGGCACCCACCTCCTATTACCGGGACTC 776
Query 780 AGTCCTGCCAAAGCTGCTTGAAGAAAAGGTTATAAGAATTTCCCCATTTGCAAATAGACT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGTCCTGCCAAAGCTGCTTGAAGAAAAGGTTATAAGAATTTCCCCATTTGCAAATAGACT 836
Query 840 TTCGTTTGATGCTCCTCGAGCTGTCCAGAGATTTAGATGTTTGGCGAATAATGTAGCCTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTCGTTTGATGCTCCTCGAGCTGTCCAGAGATTTAGATGTTTGGCGAATAATGTAGCCTT 896
Query 900 GCGATTTTCAAAACCCATACTGACCCAAGGAGAAACATTGGTGAACAAAATGAAGG-GTC 958
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 897 GCGATTTTCAAAACCCATACTGACCCAAGGTGAAACATTGGTGAACAAAATGAAGGAG-C 955
Query 959 TTAGTGCAAACAACGCCGGGAAATACGTTTCTGTGCATCTTCGTTTTGAAGAGGATATGG 1018
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 956 TTAGTGCAAACAACGCCGGGAAATATGTTTCCGTGCATCTTCGTTTTGAAGAGGATATGG 1015
Query 1019 TTGCGTTCTCTTGTTGTGTATTTGATGGTGGAGACCAAGAAAAACAAGACATGATTGCCG 1078
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCGCGTTCTCTTGTTGTGTATTTGATGGTGGAGACCAAGAAAAACAAGACATGATTGCCG 1075
Query 1079 CTAGAGAACGAGGATGGAAAGGGAAGTTCACAAAACCGGGCCGTGTGATACGACCAGGAG 1138
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CGAGAGAACGAGGATGGAAAGGGAAGTTCACAAAACCGGGCCGTGTGATACGACCAGGAG 1135
Query 1139 CTAACAGGCTCAATGGGAAATGCCCTTTAACTCCTTTAGAGGTCGGTTTGATGCTTAGAG 1198
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 CTAACAGGCTCAATGGGAAATGCCCTTTAACTCCTTTAGAGGTTGGTTTGATGCTTAGAG 1195
Query 1199 GAATGGGCTTCAACAAAAGTACATATATATTCCTTGCCGCTGGCCCGATATATAGCGCAA 1258
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1196 GAATGGGCTTCAACAAAAGTACATATATATACCTTGCCGCTGGCCCGATATATAGCGCAA 1255
Query 1259 ATAGAACTATGGCCCCACTACTCGAGATGTTCCCTAATCTACAGACAAAGGAGATGCTTG 1318
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 ATAGAACTATGGCTCCACTACTCGAGATGTTCCCTAATCTACAGACGAAGGAGATGCTTG 1315
Query 1319 CTTCTGAGGAAGACCTGGCTCCTTTTAAGAACTTCTCCTCGAGAATGGCTGCAATAGATT 1378
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1316 CTTCTGAGGAAGAACTGGCTCCTTTTAAGAACTTCTCCTCGAGAATGGCTGCAGTAGATT 1375
Query 1379 ACACGGTGTGTCTCCACAGTGAGGTATTTGTGACAACACAAGGTGGAAACTTCCCTCATT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 ACACGGTGTGTCTCCACAGTGAGGTATTTGTGACAACACAAGGTGGAAACTTCCCTCATT 1435
Query 1439 TCCTCATGGGGCATCGGAGGTATTTGTTTGGAGGACATTCAAAGACGATTCAGCCAGACA 1498
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1436 TCCTCATGGGGCATAGGAGGTATTTGTTTGGAGGACATTCAAAGACGATTCGGCCAGACA 1495
Query 1499 AGCGAAAGTTAGCCGTACTCTTTGACAATCCCAAGTTGGGATGGAAAAGTTTTAAACGGC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AGCGAAAGTTAGCCGTACTCTTTGACAATCCCAAGTTGGGATGGAAAAGTTTTAAACGGC 1555
Query 1559 AAATGCTAAGTATGAGGTCCCATAGTGACTCCAAGGGGTTTGAGCTGAAACGATCAAGTG 1618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 AAATGCTAAGCATGAGGTCCCATAGTGACTCCAAGGGGTTTGAGCTGAAACGATCAAGTG 1615
Query 1619 ACTCCATTTACATATTCCCTTGTCCTGATTGTATGTGCCGGAAGAACAAAACAACAGCAT 1678
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1616 ACTCCATTTACATATTCCCTTGCCCTGACTGCATGTGCCGGAAGAACAAAACAACAGCAT 1675
Query 1679 CAGCCACCTGACACATTCTTTTACTGGAT-TCTTCTTG-TGCATTCTTTTATTTACATGT 1736
||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 1676 CAGCCACCTGACACATTCTTTTACTGGATATCTTCT-GATGCATTCTTTTATTTACATGT 1734
Query 1737 GTTGCTAATTCTTTCAATTCTTTGGCCACATCCGCATCCAAACAGAGCGAGAGCGAGACA 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1735 GTTGCTAATTCTTTCAATTCTTTGGCCACATCCGCATCCAAACAGAGCGAGAGTGAGACA 1794
Query 1797 GAGAGGACTTCCCAAGCATTCTTCTTGGG 1825
|||||||||||||||| ||||||||||||
Sbjct 1795 GAGAGGACTTCCCAAGAATTCTTCTTGGG 1823
> Ahg484066 jgi|Araly1|484066|fgenesh2_kg.5__58__AT2G01480.1
Length=2469
Score = 1526 bits (826), Expect = 0.0
Identities = 1321/1558 (85%), Gaps = 42/1558 (3%)
Strand=Plus/Plus
Query 138 AAGTCGGAACGTCGCTCACCGTCTCTCATGGATCATTTTATCTGTTCTTCTCCGGCGTCA 197
|||||||| | ||||||| |||||||| |||||| | ||||| ||||||||||| || ||
Sbjct 385 AAGTCGGACCCTCGCTCATCGTCTCTCTTGGATCCTCTTATCGGTTCTTCTCCGTCGCCA 444
Query 198 GGGAAT-TCTCCTTTTCGCTCCTATCATCTACATCTCCTGTATGCT--TTTTCA-CCTAC 253
|||||| | |||| ||||||||| | ||||| ||||| |||||||| ||| || |
Sbjct 445 GGGAATAT-TCCTATTCGCTCCTCTAATCTATATCTCTTGTATGCTCCTTTACATGGGA- 502
Query 254 ACGCGGCGTCGTTTGATGCCT-CTCCCATTATCCACCGCCGTCCTGCTCCGGGATCCGTC 312
|| || | ||||| |||| | ||| || || || || || ||| | || ||||||||
Sbjct 503 AC-CGTC-TCGTTCGATG-TTGTTCCAATCATACAGCGTCGACCTCCGCCAGGATCCGTT 559
Query 313 TACCGGAGCCCTCAGGTTTACGCTAGGCTTCGCG-GC-GAGATTGAAGCCGATAATACCA 370
||| ||||||||||||||||| | || || || | ||||| || ||||||||| |||
Sbjct 560 TACAAAAGCCCTCAGGTTTACGCCAAGC-TC-CGTCCTGAGATGGACGCCGATAATTCCA 617
Query 371 CGGCTGATGCGATATCAACAATTTGGAAGCGTTCCTATAAAGGT-GTAGAATGGAAGCCA 429
| |||||||| ||| |||| |||||||| | ||||||||||||| || |||||||||||
Sbjct 618 CCGCTGATGCCATAACAACCATTTGGAAACATTCCTATAAAGGTGGT-GAATGGAAGCCC 676
Query 430 TGTGTGAACATGTCTACTGGAGTTTTACCTGTGTCAAATGGTTTCATATTTATTGAGGCA 489
| ||||||| ||||||||||| || || | |||||| |||||||||| | | ||||||
Sbjct 677 TACGTGAACAAGTCTACTGGAGACTTGCCCGAGTCAAACGGTTTCATATATGTCGAGGCA 736
Query 490 AATGGAGGCTTGAATCAGCAGCGGACTTCGATATGCAATGCGGTTGCTGTGGCAGGCTAC 549
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 737 AACGGAGGCTTGAATCAGCAGCGGACATCGATATGCAATGCGGTTGCTGTGGCAGGCTAT 796
Query 550 CTTAATGCGACCCTTGTAATTCCCAACTTTCACTATCACAGCATATGGAAAGATCCGAGT 609
|||||||| || || |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 797 CTTAATGCAACTCTAGTAATTCCCAACTTTCACTATCACAGCATATGGAGAGATCCAAGT 856
Query 610 AAATTTGGGGACATCTATGATGAAGAGTACTTTATC-GATACCTTAGCAAATGATGTGCG 668
||||||||||||||||| |||||||| | |||| | | |||||||||||||||||||||
Sbjct 857 AAATTTGGGGACATCTACGATGAAGATTTCTTTGTTAG-TACCTTAGCAAATGATGTGCG 915
Query 669 GGTGGTCGATACAGTTCCTGAATA-CTTGATGGAGCGTTTTGACTATAACTTGACAAATG 727
|||||| |||||| |||||||||| || ||||||||||||||||| ||| |||||||||
Sbjct 916 GGTGGTTGATACAATTCCTGAATATCTA-ATGGAGCGTTTTGACTACAACATGACAAATG 974
Query 728 TCTACAACTTCAGAGTTAAAGCATGGGCACCCACCTCC-TATTACCGGGACTC-AGTCCT 785
|||| ||||||||||||||||||||| |||| | || ||||| || ||||| | || |
Sbjct 975 TCTATAACTTCAGAGTTAAAGCATGGTCACCTAT-TCAATATTATCGAGACTCGA-TCTT 1032
Query 786 GCCAAAGCTGCTTGAAGAAAAGGTTATAAGAATTTCCCCATTTGCAAATAGACTTTCGTT 845
||| ||||||||||| || ||| ||||| |||| || |||||||||||||||||||| ||
Sbjct 1033 GCCGAAGCTGCTTGAGGAGAAGATTATACGAATATCTCCATTTGCAAATAGACTTTCTTT 1092
Query 846 TGATGCTCCTCGAGCTGTCCAGAGATTTAGATGTTTGGCGAATAATGTAGCCTTGC-GAT 904
||||||||| | ||||||||||||| ||||||||||||||||| ||| |||| || | |
Sbjct 1093 TGATGCTCCGCAAGCTGTCCAGAGACTTAGATGTTTGGCGAATTATGAAGCCCTGAAG-T 1151
Query 905 TTTCAAAACCCATACTGACCCAAGGAGAAACATTGGTGAACAAAATGAAGG-GTCTTAGT 963
|||| ||||||||||| |||| |||||||||| ||||||| | |||||| | | | |||
Sbjct 1152 TTTCGAAACCCATACTAACCCTAGGAGAAACACTGGTGAAGAGAATGAAAGAG-CAAAGT 1210
Query 964 GCAAACAACGCCGGGAAATACGTTTCTGTGCATCTTCGTTTTGAAGAGGATATGGTTGCG 1023
|||||| ||| || |||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 1211 GCAAACCACGGCGCAAAATACGTTTCTGTACATCTGCGTTTTGAAGAGGACATGGTAGCT 1270
Query 1024 TTCTCTTGTTGTGTATTTGATGGTGGAGA-CCAAGAAAAACAAGACATGATTGCCGCTAG 1082
||||||||||| ||||||||||||| || ||||||||||||||| |||||||| || ||
Sbjct 1271 TTCTCTTGTTGCATATTTGATGGTGG-GAACCAAGAAAAACAAGATATGATTGCAGCAAG 1329
Query 1083 AGAACGAGGATGGAAAGGGAAGTTCACAAAACCGGGCCGTGTGATACGACCAGGAGCTAA 1142
|||| ||||||||||||| |||||||||||||| || ||||| |||||||| || ||||
Sbjct 1330 AGAAAGAGGATGGAAAGGAAAGTTCACAAAACCAGGTCGTGTTATACGACCTGGTGCTAT 1389
Query 1143 CAGGCTCAATGGGAAATGCCCTTTAACTCCTTTAGAGGTCGGTTTGATGCTTAGAGGAAT 1202
||||| || || ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1390 CAGGCAAAACGGAAAATGCCCTTTGACTCCTTTAGAGGTGGGTTTAATGCTTAGAGGAAT 1449
Query 1203 GGGCTTCAACAAAAGTACATATATATT-CCTTGCCG-CTGGCCCGATATAT-AGCGCAAA 1259
||| ||||||||||| |||||||| || |||||| | |||| |||||| | ||| ||
Sbjct 1450 GGGGTTCAACAAAAGCACATATAT-TTACCTTGC-GTCTGGTGAAATATATGA-CGCGAA 1506
Query 1260 TAGAACTATGGCCCCACTACTCGAGATGTTCCCTAATCTACAGACAAAGGAGATGCTTGC 1319
| ||||||||||||| ||||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct 1507 TCGAACTATGGCCCCGCTACTAGAGATGTTCCC-AATTTACAAACTAAGGAGATGCTTGC 1565
Query 1320 TTCTGAGGAAGACCTGGCTCCTTTTAAGAA-CTTCTCCTCGAGAATGGCTGCAATAGATT 1378
|| ||||| || || ||||| | |||||| |||||| || |||||||||||||||||||
Sbjct 1566 ATCAGAGGAGGAACTTGCTCCATATAAGAAACTTCTCTTCCAGAATGGCTGCAATAGATT 1625
Query 1379 ACACGGTGTGTCTCCACAGTGAGGTATTTGTGACAACACAAGGTGGAAACTTCCCTCATT 1438
||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1626 ACACGGTCTGTCTCCACAGTGAGGTATTTGTGACCACGCAAGGTGGAAACTTTCCTCATT 1685
Query 1439 TCCTCATGGGGCATCGGAGGTATTTGTTTGGAGGACATTCAAAGACGATTCAG-CCAGAC 1497
| |||||||| |||||||| |||||||||||||||||||| ||||| ||| || || |||
Sbjct 1686 TTCTCATGGGTCATCGGAGATATTTGTTTGGAGGACATTCGAAGACCATT-AGACCGGAC 1744
Query 1498 AAGCGAAAGTTAGCCGTACTCTTTGACAATCCCAAGTTGGGATGGAAAAGTTTTAAACGG 1557
|||||||||||||| | ||||||||||||||||| | |||||| |||||||||||
Sbjct 1745 AAGCGAAAGTTAGCAATTCTCTTTGACAATCCCAACATCGGATGGCGGAGTTTTAAACGT 1804
Query 1558 CAAATGCTAAGTATGAGGTCCCATAGTGACTCCAAGGGGTTTGAGCTGAAACGATC-AAG 1616
|| ||||||| |||||||| ||||||||||| |||||||||||||| |||||| | ||
Sbjct 1805 CAGATGCTAAACATGAGGTCTCATAGTGACTCAAAGGGGTTTGAGCTAAAACGACCTAA- 1863
Query 1617 TGACTCCATTTACATATTCCCTTGTCCTGATTGTATGTGCCGGAAGAACAAAACAACA 1674
|||||||||||||| ||||||||| ||||| || |||| ||| | |||||||||||||
Sbjct 1864 TGACTCCATTTACACATTCCCTTGCCCTGACTGCATGTCCCGTAGGAACAAAACAACA 1921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5