BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14980.1
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471686 jgi|Araly1|471686|fgenesh2_kg.1__1640__AT1G14980.1 861 0.0
> Ahg471686 jgi|Araly1|471686|fgenesh2_kg.1__1640__AT1G14980.1
Length=661
Score = 861 bits (466), Expect = 0.0
Identities = 613/678 (90%), Gaps = 34/678 (5%)
Strand=Plus/Plus
Query 22 CCCCAAATTAAAAACTCAGAAACCCTAGAAAATTCCGATTCATCAACTGAGAGAGAAGAA 81
|||| |||||||| ||||||||||||||||||| |||||||||| | | ||||||||||
Sbjct 1 CCCC-AATTAAAACCTCAGAAACCCTAGAAAATCCCGATTCATC-A-TCCGAGAGAAGAA 57
Query 82 GAATTGAGAAATGATGAAGCGTCTGATCCCAACGTTCAACCGCATCTTGGTGCAGAGAGT 141
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 58 GAATTGAGAAATGATGAAGCGTCTCATCCCAACGTTCAACCGCATCTTGGTGCAGAGAGT 117
Query 142 CATCCAGCCCGCTAAAACCGAAAGCGGCATTCTCCTACCTGAGAAATCCTCCAAGCTGAA 201
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CATCCAGCCTGCAAAAACCGAAAGCGGCATTCTCCTACCTGAGAAATCCTCCAAGCTGAA 177
Query 202 CTCAGGCAAGGTGATAGCTGTTGGACCTGGATCAAGGGATAAGGACGGGAAATTGATTCC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCAGGCAAGGTGATAGCTGTTGGACCTGGATCAAGGGATAAGGACGGGAAATTGATTCC 237
Query 262 GGTCTCTGTGAAGGAAGGCGACACTGTTCTTCTTCCAGAGTACGGTGGTACACAGGTCAA 321
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 GGTCTCTGTGAAGGAAGGCGACACTGTTCTTCTTCCAGAGTACGGTGGTACCCAGGTCAA 297
Query 322 GCTCGGCGAGAACGAGTACCATCTCTTCCGGGACGAGGATGTTTTGGGAACTTTGCACGA 381
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 298 GCTCGGCGAGAACGAGTACCATCTCTTCCGGGACGAGGATGTCTTGGGAACATTGCACGA 357
Query 382 GGATTGAAAAGGCTAA-GCTTGCC-AACTTAACCACGAGGGTTCATGTTGG--TG--TTT 435
||||| |||||||||| | ||| | |||| |||||||| |||||||||||| || |||
Sbjct 358 GGATTAAAAAGGCTAAAG-TTGGCTAACTCAACCACGAAGGTTCATGTTGGCGTGCGTTT 416
Query 436 GTGTTATGA--GGAGAAGTCATTT-ATAAATTAGTTTATCTTGAAGATGTGGTTGGACTT 492
|||||||| |||| ||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 417 GTGTTATGTCTGGAGGAGTTATTTTATAAGTTAGTTTATCTTGAAGATGTGGTTGGACTT 476
Query 493 TGTTGTCGTTTATCATTGAATCTACCTTTATGAACCTGTCTTTGAATTTTTACAAATGGG 552
||| ||||||||||||||| || ||||| ||| | |||||||||| || || |
Sbjct 477 TGT---CGTTTATCATTGAATTTATCTTTAAGAAT-TATCTTTGAATTCTT-CA--T--- 526
Query 553 CATCAATCACATGGATAACCCAAGTGTTGCATCTTCT----C-A-T--TTTGTGCTTTTC 604
|| | ||| |||| |||||||||||||||||||||| | | | ||||||||||||
Sbjct 527 CA--A-TCATATGGGTAACCCAAGTGTTGCATCTTCTGATTCTAATACTTTGTGCTTTTC 583
Query 605 CGTAATCTGTGGATGCTTTTCGTTTACGTTTAGGCAGCAACTTCAATAGCCAATGTAGAC 664
| |||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 584 CATAATCTGTTGATGCTTTTCCTCTACGTTTAGACAGCAACTTCAATAGCCAATGTAGAC 643
Query 665 GATAGCTTAGTTGACTTT 682
||||||||||||||||||
Sbjct 644 GATAGCTTAGTTGACTTT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25351739805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5