BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G14990.2
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471687 jgi|Araly1|471687|fgenesh2_kg.1__1641__AT1G14990.1 536 9e-152
> Ahg471687 jgi|Araly1|471687|fgenesh2_kg.1__1641__AT1G14990.1
Length=511
Score = 536 bits (290), Expect = 9e-152
Identities = 352/382 (92%), Gaps = 4/382 (1%)
Strand=Plus/Plus
Query 52 TTTGGTAAAGTGATCACAAGGTGTTCGATATAATACCTGAAAGAGTTTCCGA-AGGTGTG 110
|||||||||||||||||||||||||||| ||||||||||||||| |||| | ||| |||
Sbjct 1 TTTGGTAAAGTGATCACAAGGTGTTCGACATAATACCTGAAAGAACTTCC-ATAGGGGTG 59
Query 111 AAGATGATGATCTTGGATGTTTGCT-CAGAGGTTATAAAGATCCAGAAGCTACGACGGGC 169
||||||| | ||||||||||||| | |||||||| ||||||||||||||||||| ||
Sbjct 60 AAGATGACGGTCTTGGATGTTTG-TGCAGAGGTTTTAAAGATCCAGAAGCTACGGCGTTT 118
Query 170 TGTCTCTTACGCCGGATTCTACTGCTTCACTGCTGCCCTCACATTCTTCTATACAAACAA 229
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 119 TGTCTCTTACGCCGGATTCTACTGTTTCACTGCTGCTCTCACATTCTTCTATACGAACAA 178
Query 230 CACAACAAGAGCAGGATATTCCAGGGGAGATCAGTTTTATGCATCTTACCCTGCTGGCAC 289
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 179 CACAACAAGAGCAGGATATTCCAGGGGCGATCAGTTTTATGCATCTTATCCTGCCGGCAC 238
Query 290 CGAACTTTTGACCGACACAGCTAAGCTGTACAAAGCGGCGCTTGGGAATTGCTATGAATC 349
|||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGAACTTCTAACCGACACGGCAAAGCTGTACAAAGCGGCGCTTGGGAATTGCTATGAATC 298
Query 350 TGAAGATTGGGGTCCTGTTGAATTCTGCATAATGGCTAAGCATTTTGATCGCCAGGGAAA 409
||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 299 TGAGGATTGGGGTCCTGTCGAGTTCTGCATAATGGCTAAGCATTTTGAGCGCCAGGGAAA 358
Query 410 ATCTCCATACGTTTACCACTCC 431
||||||||||||||||||||||
Sbjct 359 ATCTCCATACGTTTACCACTCC 380
Score = 95.3 bits (51), Expect = 6e-19
Identities = 108/132 (82%), Gaps = 18/132 (14%)
Strand=Plus/Plus
Query 462 CAATACATGGCTCACCTTCTATCTCAAGGCCAACTCGATGGAAGTGGCTAGTGGCGCCAG 521
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 381 CAATACACGGCTCACCTTCTTTCTCAAGGCCAACTCGATGGAAGTGGCTAGTGGCG--AG 438
Query 522 CTCTCTTTGTTTCAGCTTTGTGCCTAATCTTGTTATAGCAAATTCGAATCCTGGTATCTT 581
|| | | || | | || ||||||||||||||||| |||| || |||||||
Sbjct 439 CT-T-T--GT---A--T-----CC-AATCTTGTTATAGCAAAGGCGAACCCGGGTATCT- 482
Query 582 GGAACATTTGTA 593
||||||||||||
Sbjct 483 GGAACATTTGTA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5