BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15010.1

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471689 jgi|Araly1|471689|fgenesh2_kg.1__1643__AT1G15010.1         645    0.0  


> Ahg471689 jgi|Araly1|471689|fgenesh2_kg.1__1643__AT1G15010.1
Length=432

 Score =  645 bits (349),  Expect = 0.0
 Identities = 408/435 (94%), Gaps = 9/435 (2%)
 Strand=Plus/Plus

Query  9    ATGGAAA-TGATACTG---ATCTCGTCATCGACACTCAGGTTCCATCCATTGAGGACATC  64
            ||||||| | ||||||   ||||| || ||| ||||||||||||||||||||||||||||
Sbjct  1    ATGGAAACT-ATACTGATCATCTCCTCGTCGCCACTCAGGTTCCATCCATTGAGGACATC  59

Query  65   AC-AAAGAATCGCCACCGGAACCAATAGAAGACGAACCACCACCGTGTGTGCAGACTACT  123
            || |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct  60   ACAAAAG-ATCGCCACCGGAACCAAGAGAAGACGAACCACCACCGTGTGTGCCGACTACT  118

Query  124  ACAGAGGAGGAAGAACGGTGGACGAGAACATGGTGGTCCTTAGGAAACGAATCCATGAGA  183
            ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  119  ACAGAGGAGGAAGAACGGTGGACGAGAACATGGTGGTCCTTAGGAAAAGGATCCATGAGA  178

Query  184  TGAAGATGGTTGAACGCAACTTTGAACCTCCTTCTCATTGGATGCAATGGGAGAAACGTT  243
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  179  TGAAGATGGTTGAACGCAACTATGAACCTCCTTCTCATTGGATGCAATGGGAGAAACGTT  238

Query  244  TCTACTGCAACTACGACGCTACTATATGTGATGCACTCACTCTTCTCCAAACTTTTCTCA  303
            | ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct  239  TATACTGCAACTACGACGCTACTATATGTGACGCGCTCTCTCTTCTCCAAACTTTTCTCA  298

Query  304  TGAACTCTCGTCCCAGCGTCGCGTTTGGAACGT-GTCTTCTTCTCCTCGTCAGCGTTCCC  362
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  299  TGAACTCTCGTCCCAGCGTCGCGTTTGGAACGTTG-CTTCTTCTCCTCGTCAGCGTTCCC  357

Query  363  GTCTCCTCCGCCGTTTTTGCTTTTCGCATCCTTGATCTAGCTCTTTGGCTTTTGGACGCC  422
            |||||||| ||||||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct  358  GTCTCCTCTGCCGTTTTTGCGTTTCGCATCCTTGATATAACTCTTTGGCTTTTGGACACC  417

Query  423  GTTCACGTAGTATGA  437
            | |||||||||||||
Sbjct  418  GCTCACGTAGTATGA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19535661568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5