BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15050.1

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312501 jgi|Araly1|312501|fgenesh1_pm.C_scaffold_1001281           721    0.0  


> Ahg312501 jgi|Araly1|312501|fgenesh1_pm.C_scaffold_1001281
Length=462

 Score =  721 bits (390),  Expect = 0.0
 Identities = 441/465 (95%), Gaps = 6/465 (1%)
 Strand=Plus/Plus

Query  97   ATGGACTCAGACCCAC-TCGGTGTTTTCCCAAATTCTCCCAAGTATCATCCATATTACTC  155
            |||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||| |
Sbjct  1    ATGGACTCAGACCCACAT-GGTGTTATCCCAAGTTCTCCCAAGTATCATCCATATTACCC  59

Query  156  GCAGACCACGGAGTTTGGTGGCGTAATCGATTTAGGTCTCAGCCTGAGAACCATACAACA  215
             |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TCAGAACACGGAGTGTGGTGGCGTAATCGATTTAGGTCTCAGCCTGAGAACCATACAACA  119

Query  216  TGAGATTTACCACT-CATCTGGCCAAAGATATTGTAGTAATGAAGGATACAGACGGAAGT  274
            |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct  120  TGAGATTTACCA-TACATCTGGCCAAAAATATTGTAGTAATGAAGGATACAGACGGAATT  178

Query  275  GGGGTTATGTAAAGGTCACCATGGAT-GGTTTGGTGGTAGGTCGCAAGGTCTGTGTTCTT  333
            ||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||
Sbjct  179  GGGGTTATGTAAAGGTCACTATGGATGGGTTT-GTGGTAGGTCGCAAGGTATGTGTTCTT  237

Query  334  GATCATGGAAGCTATTCAACTCTTGCTCATCAACTCGAGGACATGTTTGGGATGCAGAGT  393
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  GATCATGGAGGCTATTCAACTCTTGCTCATCAACTCGAGGACATGTTTGGGATGCAGAGT  297

Query  394  GTGTCGGGATTGAGGTTGTTCCAGATGGAGTCTGAGTTCTGTTTGGTCTACAGAGACGAA  453
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  GTGTCGGGATTGAGATTGTTCCAGATGGAGTCTGAGTTCTGTTTGGTCTACAGAGACGAA  357

Query  454  GAAGGTCTGTGGAGAAATGCTGGGGATGTTCCATGGAATGAGTTCATAGAAAGCGTGGAG  513
            |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  GAAGGTATCTGGAGGAATGCTGGGGATGTTCCATGGAATGAGTTCATAGAAAGCGTGGAG  417

Query  514  CGGCTGAGAATCACAAGAAGAAACGATGCTGTACTTCCCTTTTAA  558
            |||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct  418  CGGCTGAGAATCACAAGAAGAAACGATGTTATACTTCCGTTTTAA  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20375084526


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5