BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15060.1
Length=2301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920412 jgi|Araly1|920412|scaffold_101693.1 2843 0.0
> Ahg920412 jgi|Araly1|920412|scaffold_101693.1
Length=1768
Score = 2843 bits (1539), Expect = 0.0
Identities = 1697/1773 (96%), Gaps = 11/1773 (1%)
Strand=Plus/Plus
Query 99 AATCTGCCAGAGTCCGTACCATGTCCACCATGCCTCCACAATTTCCCTTGGAGATCCGCT 158
|||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 AATCTGCCAGAGTCTGTGCCATGTCCACCATGCCTCCCCAATTCCCCTTGGAGATCCGCT 60
Query 159 CAGCTCTTCGCCGGGCTTCCTCCACCGTCTATCTCCACCGTTCCATCAGCACCGTCACTA 218
||||||||||||| |||||||||||||| ||| ||||| | |||||| |||||||||||
Sbjct 61 CAGCTCTTCGCCGAGCTTCCTCCACCGTATATTTCCACTGCTCCATCGGCACCGTCACT- 119
Query 219 CTACTCCTTCGTTTCGTCACCGAACGACGTTGTTACGACCGAGAGCTTTCTCTTCTTCCT 278
| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 120 C--CTCCTTCGTTTCGTCACCGCACGACGTTGTTTCGACCGAGAGCTTTCTCTTCTTCCT 177
Query 279 CTGTTAAGCTCCCCACGAAACCTTCTCTTTGCACCGCCGACGAGCTTCATTACGTCTCCG 338
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 CTGTTAAGCTACCCACGAAACCTTCTCTTTGCACCGCCGACGAGCTTCATTACGTCTCTG 237
Query 339 TTCCTAACACCGATTGGCGTCTCGCTCTCTGGCGCTACTTGCCTCCTCCTCAGGCTCCGA 398
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 TTCCTAACAGCGATTGGCGTCTCGCTCTCTGGCGTTACTTGCCTCCTCCTCAGGCTCCGA 297
Query 399 CGAGGAATCATCCATTGTTACTGTTGTCTGGAGTAGGAACTAATGCCATCGGATATGATT 458
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 298 CGAGGAATCATCCGTTGTTGCTATTGTCTGGAGTAGGAACTAATGCCATCGGATATGATT 357
Query 459 TATCTCCTGGTTGCTCTTTTGCAAGGCATATGTCTGGACAGGGATTTGAGACTTGGATTC 518
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 358 TATCTCCTGGTTGCTCTTTTGCAAGACATATGTCTGGTCAGGGATTTGAGACCTGGATTC 417
Query 519 TCGAGGTTCGTGGAGCTGGATTGAGTACACGAGTATCTGATCTTAAGGACGTTGAGGAAT 578
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 TCGAGGTTCGTGGAGCTGGATTGAGTACACGAGTATCTGATCTTAAGGATGTTGAGGAAT 477
Query 579 CTGCTCATGAATTGTCGAATCAGATAGAATCTACTGCTAGAGCTGCTGCAGGTAAAGAAA 638
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTGCTCACGAATTGTCGAATCGGATAGAATCTACTGCTAGAGCTGCTGCAGGTAAAGAAA 537
Query 639 CTTGTTCTGATGAAAAGC-AGACTACTGATATTATGGACAGTAGTGCACCTGCACCAGCG 697
||| |||||||||||| | || |||||||||| |||| | ||| | ||||||||||
Sbjct 538 CTTCTTCTGATGAAAA-CAAGGCTACTGATATCGTGGA-A--AGT--A-GTGCACCAGCG 590
Query 698 TCGGATGTTTCAGTTGTTGGCGAAGCATCGGCTTGGGACGAGTCACAGCTTGTGGCGAGA 757
|||||||||||||||||||||||| |||| || ||||| || ||||| ||||||||||||
Sbjct 591 TCGGATGTTTCAGTTGTTGGCGAATCATCAGCCTGGGATGAATCACAACTTGTGGCGAGA 650
Query 758 TTGACATCAACTTTCATGAGTTTGTCAGAAAGACTTTCTGGCTTTCTCAGTGAAGGTCAG 817
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTGACATCGACTTTCATGCGTTTGTCAGAAAGACTTTCTGGCTTTCTCAGTGAAGGTCAG 710
Query 818 TCTGTGTTCATGTCTGCTAAGTTGTTTGACAAAATTGCAATGCTTGTAGATGATACACAG 877
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 711 TCAGTGTTCATGTCTGCTAAGTTATTTGACAAAATTGCAATGCTTGTAGATGATACACAG 770
Query 878 CTGTACGAGCGCTTTAATGATATAAGATCGAAGCTTTTGAGTTTGATAGAGTCAAAGCAA 937
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||
Sbjct 771 CTGTACGAGCGCTTTAATGAGATAAGATCCAAGCTTTTGAGTTTGATTGAGTCAAGGCAA 830
Query 938 AACTCAGGACTTGTTAACCAAGTCAGAGATTTGGCTCAGCGCCTTGTGAATCTTTTCGAC 997
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 831 AACTCAGGACTTGTTAACCAAATCAGAGATTTGGCCCAGCGCCTTGTGAATCTTTTCGAT 890
Query 998 GATGGTCAAAGGTCTGTCTCGCCTCCGCTGATTGATTTACAAGAGCGCCTCACTGCGACC 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GATGGTCAAAGGTCTGTCTCGCCTCCGCTGATTGATTTACAAGAGCGCCTCACTGCGACC 950
Query 1058 ATAGAAGATTTTCAGAAGCAACTGGATTTGATAGTTAAATATGACTGGGATTTTGATCAC 1117
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 951 ATAGAAGATTTTCAGAAGCAACTCGATTTGATAGTTAAATATGACTGGGATTTTGATCAC 1010
Query 1118 TACCTGGAAGAGGATGTCCCTGCTGCGATTGAGTATGTAAGAGCACAAAGCAAGCCCAAG 1177
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1011 TACCTGGAGGAGGATGTCCCTGCTGCGATTGAGTATGTTAGAGCGCAAAGCAAGCCCAAG 1070
Query 1178 GACGGCAAACTATTCGCAATTGGGCACTCCATGGGGGGTATCCTACTCTATGCAATGCTA 1237
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GATGGCAAACTATTCGCAATTGGGCACTCCATGGGGGGTATCCTACTCTATGCAATGCTG 1130
Query 1238 TCACGTTGTGCTTTTGAAGGACGAGAACCTTCCGTGGCAGCTGTGGCAACTCTGGCATCA 1297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1131 TCACGTTGTGCTTTTGAAGGACGAGAACCTTCTGTGGCAGCTGTGGCAACTCTGGCATCA 1190
Query 1298 TCGGTTGATTACACAACCTCAAATTCTGCACTCAAATTGCTCATACCTCTTGCCAATCCT 1357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TCGGTTGATTACACAACCTCAGATTCTGCACTCAAATTGCTCATACCTCTTGCCAATCCT 1250
Query 1358 GCAGAAGCTCTGAGTGTTCCAGTTGTTCCTCTGGGTGCTTTGTTGGCTGCCGCTTTTCCT 1417
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1251 GCAGAAGCTCTGAGTGTTCCAGTTGTTCCGCTGGGCGCTCTGTTGGCTGCCGCTTTTCCT 1310
Query 1418 CTTTCGACACGTCCTCCATATGTATTATCTTGGCTTAATGATTTGATATCATCAACAGAT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CTTTCGACACGTCCTCCATATGTATTATCTTGGCTTAATGATTTGATATCATCAACAGAT 1370
Query 1478 ATGATGCACCCTGAAATGTTAGAAAAGCTTGTCTTGAATAACTTCTGTACCATACCTGCA 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ATGATGCACCCTGAAATGTTAGAAAAGCTTGTCTTGAATAACTTCTGTACCATACCTGCA 1430
Query 1538 AAACTACTTATTCAGCTGACAACGGCCTTTCGAGAGGGAGGCTTACGTGATCGTAGTGGT 1597
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1431 AAACTACTTATTCAGCTGACAACGGCCTTTCGAGAGGGAGGCCTACGTGATCGTAGTGGT 1490
Query 1598 AAATTTTACTATAAGGATCATCTTCCCAGAACCAGTGTCCCTGTCTTAGCTCTTGCAGGT 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AAATTTTACTATAAGGATCATCTTCCCAGAACCAGTGTCCCTGTCTTAGCTCTTGCAGGT 1550
Query 1658 GATCGGGACTTGATCTGCCCCCCTGCGGCTGTGGAAGACACTGTTAAGCTGTTTCCGGAG 1717
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1551 GATCGGGACTTAATCTGTCCCCCTGCGGCTGTGGAAGACACTGTTAAGCTGTTTCCCGAG 1610
Query 1718 AACTTGGTCACTTATAAGTTACTTGGAGAACCAGATGGACCACATTATGCACACTATGAT 1777
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1611 AACTTGGTCACTTATAAGTTACTTGGAGAACCAGACGGACCACATTATGCACACTATGAT 1670
Query 1778 TTGGTTGGAGGACGACTGGCAGTGGAGCAAGTCTATCCTTGCATAACTGAATTTCTTAGC 1837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1671 TTGGTTGGAGGACGACTGGCGGTGGAGCAAGTCTATCCTTGCATAACTGAATTTCTTAGC 1730
Query 1838 CACCATGATTCCGCATAAGTGAAACATTTCGGG 1870
||||||||||||||||||||||||||||| |||
Sbjct 1731 CACCATGATTCCGCATAAGTGAAACATTTTGGG 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86655307375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5