BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15080.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312503 jgi|Araly1|312503|fgenesh1_pm.C_scaffold_1001283 1489 0.0
> Ahg312503 jgi|Araly1|312503|fgenesh1_pm.C_scaffold_1001283
Length=939
Score = 1489 bits (806), Expect = 0.0
Identities = 895/938 (95%), Gaps = 5/938 (1%)
Strand=Plus/Plus
Query 206 ATGCCTGAAATTCATTTGGGTGCTCATACAATAAGATCCCATGGAGTAACAGTCGCGAGG 265
||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGCCCGAAATTCAATTGGGTGTTCATACAATAAGATCCCATGGAGTCACAGTCGCGAGG 60
Query 266 TTCCACATGCATGACTGGCTCATTCTTCTGCTGCTAATAGTCATTGAAATTGTTCTTAAT 325
||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 61 TTCCATATGCATGACTGGCTCATTCTTCTGCTGCTTATCGTCATCGAAATTGTTCTCAAT 120
Query 326 GTCATCGAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCT 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCATCGAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCT 180
Query 386 CTGCAGGACAACACAATTCCTTTCTGGGCTGTCCCGTTGATAGCTGTTGTGCTACCTTTT 445
||||| ||||||||||||||||||||||||||||||||||||||| | || || ||||||
Sbjct 181 CTGCAAGACAACACAATTCCTTTCTGGGCTGTCCCGTTGATAGCTATCGTACTCCCTTTT 240
Query 446 GCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCATGCAATA 505
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCTGTCATTTGTGTTTACTACTTCATCAGAAATGATGTTTATGACCTGCATCATGCAATA 300
Query 506 CTAGGGCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCT 565
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTAGGTCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCT 360
Query 566 GTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGATCTTT 625
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GTAGGTCGACCTCGTCCTGACTTCTTTTGGCGTTGTTTCCCTGATGGTATAGGGATCTTT 420
Query 626 CACAATGTCACGAA-GAATGTTCTATGTACTGGAGCTAAGGATGTGGTCAAAGAGGGACA 684
||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 CACAACGTCAC-AAGGAATGTTCTGTGTACTGGAGCTAAGGATGTGGTCAAAGAGGGACA 479
Query 685 CAAGAGCTTCCCCAGCGGCCACACATCTTGGTCGTTTGCTGGTCTAGGATTTCTATCGTT 744
||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 CAAAAGCTTCCCCAGCGGGCACACATCTTGGTCGTTTGCTGGTCTAGGATTTCTAGCGTT 539
Query 745 ATACTTGTCTGGGAAAATCAGGGTGTTTGACCAGAGAGGGCATGTTGCAAAGCTCTGCAT 804
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATACTTGTCTGGGAAAATCAAGGTGTTTGACCAGAGAGGGCATGTTGCAAAGCTCTGCAT 599
Query 805 TGTGATTTTACCTCTACTGGTTGCAGCATTGGTTGGTGTATCCAGAGTTGATGACTATTG 864
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTGATCCTACCTCTACTGGTTGCAGCATTGGTTGGTGTATCCAGAGTTGATGACTATTG 659
Query 865 GCATCACTGGCAAGATGTTTTTGGAGGAGCTATCATAGGATTGACTGTGGCCACATTTTG 924
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 GCATCACTGGCAAGATGTGTTTGGAGGAGCTATCATAGGATTGACTGTGGCCACGTTTTG 719
Query 925 TTATCTGCAATTTTTCCCTCCTCCATACGATCCAGACGGTTGGGGACCTCATGCCTACTT 984
||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 720 TTACCTGCAATTCTTCCCTCCTCCGTACCATCCAGACGGTTGGGGACCTCATGCGTACTT 779
Query 985 CCAGATGCTGGCAGACTCAAGAAATGATGTCCAAGATTCAGCAGGAATGAATCATCTAAG 1044
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 780 CCAGATGCTCGCAGACTCAAGAAACGATGTCCAAAATTCAGCAGGAATGAATCATCTAAG 839
Query 1045 CGTGAGGCAAACAGAGCTAGAGAGCGT--ACGTTGATGGAGAAGAGACGTCCATGGAAAT 1102
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 840 CGTGAGGCAAACAGAGCTAGAGAGCGTGTACGTTGATCGAGAAGAGACGTCCATGGAAAT 899
Query 1103 ATCAAGAAGCAACACGCGGGACACCACCCGTA-TGCTT 1139
|||||||||||||||||||||||||||||||| |||||
Sbjct 900 ATCAAGAAGCAACACGCGGGACACCACCCGTAATGCTT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5