BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15110.2
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471699 jgi|Araly1|471699|fgenesh2_kg.1__1653__AT1G15110.1 2623 0.0
> Ahg471699 jgi|Araly1|471699|fgenesh2_kg.1__1653__AT1G15110.1
Length=1770
Score = 2623 bits (1420), Expect = 0.0
Identities = 1698/1822 (93%), Gaps = 60/1822 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaGGGAATCGTG-GGGGAAAGAAAGCAGAGTCGTTTTCAGATCGTGAA-TAGAAG 58
||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 AAAGAAAGGGAATCGTGAGGGG-AAGAAAGCAGAGTCGTTTTCAGATCGTGAAGCAGAAG 59
Query 59 CAGCAGCAGAAGCCGTATCTATCCctctctctctctctctctctctctctctctctctct 118
|||||| |||||||||||||| | || ||||||||||||||
Sbjct 60 CAGCAGAAGAAGCCGTATCTA--------------------T-TC-CTCTCTCTCTCTCT 97
Query 119 ctctACTTTGACCGTTCCTCTTCTTTTTATTCATCAACATCATCGAGCTTTCTACTACTT 178
|||||||||||||||||||||||||||||||| || | ||||| | || | || |
Sbjct 98 CTCTACTTTGACCGTTCCTCTTCTTTTTATTCCTC--C-TCATC-A----TC-A--ACAT 146
Query 179 GGAttccta-cttcttcttcttcttcctctgattctctcccattcc-aatcaatctctag 236
| | | | | | |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 147 -CA-T-CGAGC-T-TTCTACTTCTTCCTCTGATTCTCTCCCATTCCAAATCAATCTCTAG 201
Query 237 ggttcttcttcAGCAATACTTCAGAAGCTGGTTTTGGCCATGGAACCCAATGGGTACAGG 296
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 202 GGTTCTTCAGCAGCAATACTTCAGAAGCTGGGTTTGGCCATGGAACCCAATGGGTACAGG 261
Query 297 AAAGAAAGAAGAAAGGAACAACATTTGGGGAGAATGAATGGTGGTGGTGGTGATGTTGAG 356
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 262 AAAGAAAGAAGAAAGGAACAACATTTGGGGAGAATGAA---TGGTGGTGGTGATGTTGAG 318
Query 357 ACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTT 416
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 319 AGTGATCTTGATCCATGGACTGCATGGGCTTATAAGCCTCGCACTATCTCTCTTCTCCTT 378
Query 417 ATTGGCGCTTGTTTTCTCATTTGGGCTAGTGGAGCTCTTGATCCTGACAGCACTACATCT 476
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 379 ATTGGCGCATGTTTTCTCATTTGGGCAAGTGGAGCTCTTGATCCTGAGAGCACCACATCT 438
Query 477 GATGATCTTGTCACTTCTGTCAAAAGGGGAGTGTGGGCTATGATCGCTGTCTTTCTTGCT 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GATGATCTTGTCACATCTGTCAAAAGGGGAGTGTGGGCTATGATCGCTGTCTTTCTTGCT 498
Query 537 TACTCTTTGCTCCAGGCCCCTTCAACGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGC 596
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TACTCATTGCTCCAGGCCCCTTCAACGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGC 558
Query 597 TTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAGAGA 656
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 559 TTAGTTCATGGAATGGCTGTCATTTACTTAGTTGCACTCACTTTTTTGCTCTTCCAGAGA 618
Query 657 CGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAGAACTTCCT 716
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CGTGATGATGCCCGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAGAACTTCCT 678
Query 717 GAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTT 776
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GAGAAATCTTACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTT 738
Query 777 AAGAATCTTTATGACACAGTATTTGATGAGTTTTTCTTGGCTCACATCTTTGGTTGGTGG 836
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 739 AAGAATCTTTATGACACAGTATTTGACGAGTTTTTCTTGGCTCACATCTTTGGATGGTGG 798
Query 837 GGGAAAGCAATTCTGATCCGGAACCAGCCGCTTCTTTGGGTGCTTTCAATTGGTTTTGAG 896
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 799 GGGAAAGCAATTCTGATTCGGAATCAGCCGCTTCTTTGGGTTCTTTCAATTGGTTTTGAG 858
Query 897 TTATTGGAGGTTACTTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGT 956
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TTATTGGAGCTTACCTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGT 918
Query 957 ATTGTTCTTGATATCTTGATATGCAACTGGTTTGGTATCTGGGCAGGAATGTATACAGTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 ATTGTTCTTGATATCTTGATATGCAACTGGTTTGGTATCTGGGCAGGAATGTATACAGTT 978
Query 1017 CGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATT 1076
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 CGCTACTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATT 1038
Query 1077 GGCAAAGTGAAAAGGACACTGGGGCAGTTCACACCAGCTCACTGGGACAAAGACGAGTGG 1136
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 1039 GGCAAAGTGAAAAGGACATTGGGGCAGTTCACACCAGCACATTGGGACAAAGACGAGTGG 1098
Query 1137 CATCCGCTGCAGGGACCTTGGCGTTTTATTCAAGTACTCACTCTTTGCATCATATTCTTG 1196
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1099 CATCCGCTGCAGGGACCTTGGCGTTTTATTCAAGTACTCACTCTCTGCATCGTCTTCTTG 1158
Query 1197 ACAGTGGAGCTGAACACATTCTTTCTCAAGTTTAGCCTGTGGATCCCCCCTCGAAACCCA 1256
||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1159 ACAGTGGAGCTAAACACATTCTTTCTCAAGTTTAGCCTGTGGATCCCTCCTAGAAACCCA 1218
Query 1257 GTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGGGAGTAC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1219 GTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGAGAATAC 1278
Query 1317 AATTCATATCTTCAAGACAGAAAACCTGTGAAAAAGGTGGGAGCATTCTGTTGGCTGTCA 1376
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AATTCATATCTTCAAGACAGGAAACCTGTGAAAAAGGTGGGAGCATTCTGTTGGCTGTCG 1338
Query 1377 CTGGGGATATGCATAGTAGAACTTCTCATCTGCATCAAGTTTGGAAGTGGTAGGATTGTA 1436
|||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1339 CTGGGGATTTGCATAGTAGAACTTCTCATCTGCATCAAGTTTGGAAGTGG-A---TTGTA 1394
Query 1437 CCCAACAGAAATGCCATTGTGGGTAGTGACACTATGGGGAAGTGTGGGACTTGGACTTGT 1496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CCCAACAGAAATGCCATTATGGGTAGTGACACTATGGGGAAGTGTGGGACTTGGACTTGT 1454
Query 1497 GGCCTTCTTGCTGTCTTGGACATGGAAGATCCAGAAGATCCTCGCGCAAAAGAGACGTTA 1556
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1455 GGCCTTCTTGCTGTGTTGGACATGGAAGATCCAGAAGATCCTCGCGCAAAAGAGACGCTA 1514
Query 1557 AGCGCATCATTATTGTTGCAGCAGAGACGAGAGAGAAATAGAGGTGAGACAGTGAAATGC 1616
||| ||| ||||||| ||| | | |||||||||||||| |||||||||||||||||||||
Sbjct 1515 AGCTCATGATTATTGCTGCGG-A-AGACGAGAGAGAAAGAGAGGTGAGACAGTGAAATGC 1572
Query 1617 CATTGTGGtttttttttGTAAATAGGGAGAAGAAGGAACGATGTAAATGCAATTTTCTTT 1676
|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1573 CATTGTGGGTTTTTT--GTAAATAGGGAGAAGAAGGAACAATGTAAATGCAATTTTCTTT 1630
Query 1677 AGGGATAGTGTGTGATATTCAACATTT-AC-GAAGATTCCATCAATTCTTTCATGCATCA 1734
|||| |||||||||||||||||||||| || || | ||||| |||||||||||||||| |
Sbjct 1631 AGGGGTAGTGTGTGATATTCAACATTTTACAGA-GCTTCCACCAATTCTTTCATGCATAA 1689
Query 1735 AAAGTT--CTTTCATCTTTGTTCTGCCCCCTCAATCTGACAAAACATGTTGGTTTGAATG 1792
||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1690 AAAATTTGCTTTCATCTTTGTTCTGCCTCCTCAATCTGACAAAACATGTCGGTTTGAATG 1749
Query 1793 TCAATTTTTTGTTACCATTCAC 1814
||||||||| ||||||||||||
Sbjct 1750 TCAATTTTT-GTTACCATTCAC 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5