BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15120.2

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911315 jgi|Araly1|911315|Al_scaffold_0001_1569                    298    4e-80
  Ahg896040 jgi|Araly1|896040|Al_scaffold_0005_6                       219    3e-56
  Ahg915734 jgi|Araly1|915734|Al_scaffold_0008_485                     132    4e-30
  Ahg931039 jgi|Araly1|931039|scaffold_303496.1                       80.5    2e-14


> Ahg911315 jgi|Araly1|911315|Al_scaffold_0001_1569
Length=210

 Score =  298 bits (161),  Expect = 4e-80
 Identities = 173/179 (97%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  204  GGCAGATGATGAAGTTGTTGATCCAAAGAAGTACCTTGAGGAATCTTGCAAACCAAAATG  263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3    GGCAGATGATGAAGTTGTTGATCCAAAGAAGTACCTTGAGGAATCTTGCAAACCAAAATG  62

Query  264  TGTGAAGCCACTTCTCGAATATCAGGCATGTGTCAAGAGAATCCAAGGTGATGATTCTGG  323
            |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  63   TGTGAAGCCACTACTCGAATATCAGGCGTGTGTGAAGAGAATCCAAGGTGATGATTCTGG  122

Query  324  CCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTTTTG  382
            ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct  123  CCACAAGCATTGCACTGGCCAGTATTTCGACTACTGGCATTGCATTGACAAATGTGTTG  181


> Ahg896040 jgi|Araly1|896040|Al_scaffold_0005_6
Length=204

 Score =  219 bits (118),  Expect = 3e-56
 Identities = 158/177 (89%), Gaps = 4/177 (2%)
 Strand=Plus/Plus

Query  204  GGCAGATGATGAAGTTGTTGATCCA-AAGAAG-TACCTTGAGGAATCTTGCAAACCAAAA  261
            |||||| || |||| ||||||| || || ||| ||| |||||||||||||||||||||||
Sbjct  3    GGCAGAAGAAGAAGCTGTTGAT-CAGAA-AAGATACTTTGAGGAATCTTGCAAACCAAAA  60

Query  262  TGTGTGAAGCCACTTCTCGAATATCAGGCATGTGTCAAGAGAATCCAAGGTGATGATTCT  321
            ||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||| |||
Sbjct  61   TGTGTGAAGCCACTTCTTGAATATCAGGCGTGTGTCAAGAGAATTCAAGATGATGAGTCT  120

Query  322  GGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGT  378
            |||||||| ||||||||||| ||||||||||| |||||||| ||  |||||||||||
Sbjct  121  GGCCACAAACATTGCACTGGGCAGTATTTTGATTACTGGCATTGTGTTGACAAATGT  177


> Ahg915734 jgi|Araly1|915734|Al_scaffold_0008_485
Length=420

 Score =  132 bits (71),  Expect = 4e-30
 Identities = 87/94 (93%), Gaps = 4/94 (4%)
 Strand=Plus/Plus

Query  131  TTCTTCCTTGCTTCTTCGAGTCTCGATCTCCTCTCTCAATCTCAGTCTTCAGCTTCC-AA  189
            ||||||||||   ||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct  172  TTCTTCCTTG---CTTCGAGTCCCGATCTCCTCTCTCAATCTCAGTCTGCAGCTTCCGAA  228

Query  190  TTGACTTTCAACATGGCAGATGATGAAGTTGTTG  223
            |||||||||||||||||||||||||||||| |||
Sbjct  229  TTGACTTTCAACATGGCAGATGATGAAGTTATTG  262


> Ahg931039 jgi|Araly1|931039|scaffold_303496.1
Length=307

 Score = 80.5 bits (43),  Expect = 2e-14
 Identities = 48/50 (96%), Gaps = 1/50 (2%)
 Strand=Plus/Plus

Query  175  GTCTTCAGCTTCC-AATTGACTTTCAACATGGCAGATGATGAAGTTGTTG  223
            |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  158  GTCTGCAGCTTCCGAATTGACTTTCAACATGGCAGATGATGAAGTTGTTG  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27410377323


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5