BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15125.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334804 jgi|Araly1|334804|fgenesh1_pg.C_scaffold_1001369 1650 0.0
> Ahg334804 jgi|Araly1|334804|fgenesh1_pg.C_scaffold_1001369
Length=1065
Score = 1650 bits (893), Expect = 0.0
Identities = 1009/1064 (95%), Gaps = 11/1064 (1%)
Strand=Plus/Plus
Query 1 ATGAACGGTGGAGACGGTGCTTCTAGCTATGCTCGCAACTCTTCCTATCAGAGGGGAGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACGGTGGAGACGGTGCTTCTAGCTATGCTCGCAACTCTTCCTATCAGAGGGGAGCC 60
Query 61 ATTGAGGCTGCGGAAGCACTCCTCAGGAACGAGATCAACGCACGGCTCGACATCACTAAC 120
||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 61 ATTGAGGCTGCTGAAGCACTCCTCAGGAACGAGATCAACACGCGGCTCGACATCACCAAA 120
Query 121 CATTCCTTTTCATCTTTTACAATCGCAGACTTTGGTTGCTCCTCCGGCCCCAACACCGTA 180
||||| || || ||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 121 CATTCATTCTCGTCTTTTACAATCGCAGACTTTGGATGCTCCTCCGGACCCAACACCATT 180
Query 181 ATTGCTGTCGACATCATCATCCAAGCCCTCTACCACAAGTTCACCTCTTCTCTGCCTAAT 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGCTGTAGACATCATCATCCAAGCCCTCTACCACAAGTTCACCTCTTCTCTGCCTAAT 240
Query 241 ACTACAACTCCTCAGTTTCAAGTCTTCTTCAACGACGTCTCCCACACTGATTTCAATGCA 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 ACTACAACTCCTCAGTTTCAAGTCTTCTTCAACGACGTCCCCCACACTGATTTCAATGCA 300
Query 301 CTCTTTGCTTTGCTCCCTCCACAACGCCCCTACTTCGTTGCAGGTGTCCCCGGTTCCTTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 CTCTTTGCTTTGCTCCCTCCACAACGCCCCTACTTCGTTGCAGGTGTCCCCGGTACCTTT 360
Query 361 TATGGAAACTTGTTTCCAAAGGCACATCTCAACTTGGCCTACTCCTCTTGCGCCCTCTGC 420
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TATGGAAACTTGTTTCCCAAGGCACATCTCAACTTGGCCTTCTCCTCTTGCGCCCTCTGT 420
Query 421 TGGCTCTCCGACTTGCCATCCGAGCTAACTGATACAAGCTCTCCTGCTTACAACAGAGGC 480
|||||||| || |||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 421 TGGCTCTCTGAGTTGCCACCCGAGCTAACTGACATAAGCTCTCCTGCTTACAACAGAGGC 480
Query 481 AGGATTCACTACACGGGAGCATCAGCAGAGGTTGCACAAGCTTACTCCTCTCAGTACAAG 540
|||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 481 AGGATTCACTACACGGAAGCATCAGCAGAGGTTGCACAAGCCTACTCTTATCAGTACAAG 540
Query 541 AAGGATATCAAGTTGTTTTTGCATGCTAGGTCACAGGAGCTCGCAGAAAACGGGTTGATG 600
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 AAGGATATCAAGCTGTTTTTGCATGCTAGGTCACAAGAGCTCGCAGAAAACGGGTTGATG 600
Query 601 GCACTGATTGTGCCCGGTGTACCAGATGGTTTTCTCGATTGTCAGGAGGCTTCAACGGGA 660
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 601 GCACTGATTGTGCCCGGTGTACCAGATGGTTTTCTTGATAGTCAGGAGGCTTCAACGGGA 660
Query 661 TCCGAGTTCGATCTGTTGGGTTCATGCCTCATGGACATGGCCA-A-AG--A-G-GG---- 710
||||||||||||||||||||||||||||||||||||||||||| | || | | ||
Sbjct 661 TCCGAGTTCGATCTGTTGGGTTCATGCCTCATGGACATGGCCAGAGAGGTACGTGGTGGG 720
Query 711 AATAATAGAGGAGGAGGAGGTGAACAGTTTCAACCTTCCCATATATTACACAACTCCAAA 770
||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 AATAATAAAGGAGGCGGAGGTGGACAGTTTCAACCTTCCCATATATTACACAACTCCAA- 779
Query 771 GGAACTGGAAGACATCATCAGAAGCAACGGAGAGTTGAAAATTGATAAAATGGAGACACT 830
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 780 GGAACTGGAAGACATCATCAGAAGCAACGGAAAGTTGAGAATTGATAAAATGGAGACACT 839
Query 831 GGGGAGCATGGACGCACAAGACACTATGCCTGACCTCGAGTCAAGGGTTCTGTACCTGAG 890
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGGGAGCATGGACGCGCAAGACACTATGCCTGACCTCGAGTCAAGGGTTCTGTACCTGAG 899
Query 891 AGCTGTGCTGGAAGGTCTAGTTCGTACCCACTTTGGCCACCAAATCCTCGACGACCTGTT 950
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 AGCGGTGCTGGAAGGTCTCGTTCGCACCCACTTTGGCCACCAAATCCTCGACGACCTGTT 959
Query 951 TGATCGCTACGCCCTCAAACTTGCTCATTCCTCTTTCATCCTTCAGCCTCAAACCCACAA 1010
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 960 TGATCGCTACGCCCTCAAACTTGCTCATTCCTCTTTCATCCTCCAGCCTCGAACCCACAA 1019
Query 1011 ATCCATCATGATCTTTGCCCTTCTCAGTCGCTGTCATGACATCT 1054
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 ATCCATCATGATCTTTGCCCTCCTCAGTCGCTGTCATGACATCT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5