BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15140.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920418 jgi|Araly1|920418|scaffold_101699.1 1489 0.0
> Ahg920418 jgi|Araly1|920418|scaffold_101699.1
Length=928
Score = 1489 bits (806), Expect = 0.0
Identities = 890/931 (96%), Gaps = 4/931 (0%)
Strand=Plus/Plus
Query 192 GAGCCCCAAAAACTCTCCACCATGTCCACTCTTCCTTTCGCGCCTTCTGTCACCCATGCG 251
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGCTCC-AAAACTCTCAACCATGTCCACTCTTCCTTTCGCGCCTTCTGTCACCCATGCG 59
Query 252 CACTTTAGCCACTCCCTCTCCCCCATGTTTATCCTGCGCC-ATCTCCCTCTTACACGCCA 310
|||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||
Sbjct 60 CACTTTAGCCACTCCCTCTCCCCCATGTTTATCCTGCGCCGA-CTCCCTCTCACCCGCCA 118
Query 311 TCTCCGTTTATCCCGAAATAACCGCGTCGCTTCCGTTGTATCCGCCGCCGCCGTTCGCCA 370
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 119 TCTCCGCTTATCCCGGAATAACCGCGTCGCTTCCGTCGTATCCGCCGCCGCCGTTCGCCA 178
Query 371 GGACGCTTCCCTCTGGACTCCAGCTCCTCTCTCTCTAATCGAATCAGCTGCAGAATCGCT 430
|||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 179 GGACGCCTCCCTCTGGACCCCAGCTCCTCTCTCTCTAATCGAATCGGCCGCAGAATCGCT 238
Query 431 TTTCCACATCTCAATCGACATTTCAAACGCTCCGGATCTCGTAGCTTCGTACACGAGACC 490
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 239 TTTCCACATCTCAATCGACATTTCAAACGCTCCGGATCTCGTAGCCTCTTACACGAGACC 298
Query 491 CGGTCAGTATCTCCAGATCCGTGTTCCTGATGTTGAGAAGCCTTCTTTTATGGCAATCGC 550
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGGTCAGTATCTCCAGCTCCGTGTTCCTGATGTTGAGAAGCCTTCTTTTATGGCAATCGC 358
Query 551 TTCTCCTCCTTCCTTGGCGTCTTCTCGTGGTGCTTTCGAATTCTTGGTCAAGAGCATCGC 610
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTCTCCTCCTTCATTGGCGGCTTCTCGTGGTGCTTTCGAATTCTTGGTCAAGAGCATCGC 418
Query 611 TGGTTCTACCGCGGAGATTCTCTGCGGGTTGAAGAAAGGAGAGACCGTTGAGCTTAGCTC 670
||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |
Sbjct 419 TGGATCTACCGCGGAGATTCTCTGTGGGTTAAAGAAAGGGGAGACCGTTGAGCTTAGCCC 478
Query 671 TGTGATGGGTAATGGTTTCAATATCGATCTGATTGATCCTCCTGAGGAATATCCCACCGT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 479 TGTGATGGGTAATGGTTTCAATATCGATCTGATTGATCCTCCTGAGGAATATCCCACGGT 538
Query 731 TTTGATTTTCGCCACTGGATCTGGAATTAGCCCCATCCGCTCACTAATCGAATCAGGATT 790
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 539 TTTGATTTTCGCCACTGGATCTGGAATTAGCCCCATCCGCTCACTGATCGAGTCAGGATT 598
Query 791 TGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGAT 850
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 599 TGGCGCTGATAGAAGATCTGACGTAAGACTCTATTATGGAGCTAGGAACCTGAAAAGGAT 658
Query 851 GGCTTACCAGGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATT 910
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 GGCTTACCAGGATAAGTTTAAAGAGTGGGAATCATCGGGTGTCAAAGTTGTGCCGGTATT 718
Query 911 ATCACAGCCAGATGATGGGTGGAAAGGGGAAACTGGATATGTGCAGGCTGCTTTTGCAAG 970
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 719 ATCACAGCCAGATGATGGTTGGAAAGGGGAAACCGGATATGTGCAGGCTGCTTTTGCAAG 778
Query 971 GGCTAAACAGCTATCAGCTCCCAAGGCCACGGGAGCGGTGCTGTGCGGACAGAAACAAAT 1030
||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 779 GGCTAAACAACTTTCAGCTCCTGAGGCCACAGGAGCGGTGCTGTGCGGACAGAAACAAAT 838
Query 1031 GGCTGAGGAGATAACTTCAATGCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTCAA 1090
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGCTGAGGAGATAACTTCAATTCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTCAA 898
Query 1091 AAACTTTTGACAGATATAGTTCTTGTATTAT 1121
|||||||||||||||||| ||||||||||||
Sbjct 899 AAACTTTTGACAGATATA-TTCTTGTATTAT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5