BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15150.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471706 jgi|Araly1|471706|fgenesh2_kg.1__1660__AT1G15150.1 2241 0.0
Ahg471708 jgi|Araly1|471708|fgenesh2_kg.1__1662__AT1G15170.1 1779 0.0
Ahg471709 jgi|Araly1|471709|fgenesh2_kg.1__1663__AT1G15180.1 1709 0.0
> Ahg471706 jgi|Araly1|471706|fgenesh2_kg.1__1660__AT1G15150.1
Length=1612
Score = 2241 bits (1213), Expect = 0.0
Identities = 1486/1618 (92%), Gaps = 17/1618 (1%)
Strand=Plus/Plus
Query 18 CACCACTTTCCGTTTCAACTTTCAA-----ACTCTCTCTCACAAGCCATGCAAGACGCGG 72
|||||||||| ||||||| | |||| ||||||||| | |||||||||| ||||
Sbjct 1 CACCACTTTCAGTTTCAAATCTCAACTCTCTCTCTCTCTCTCTAGCCATGCAAAACGCAC 60
Query 73 AGAGAACCACCA-ATGATCCGGTAGACAGAATTGAGAAAGTGACATGGAGAGATCTGCAA 131
|||| |||||| | ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 AGAGCTCCACCACA-GATCCGGTAGACAGAGTTGATAAAGTGACATGGAGAGATCTGCAA 119
Query 132 GACGGATCTTTCACCGCAGAACTCAAGAGGCTTATCTGCTTTGCGGCTCCTATGGCTGCC 191
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 120 GATGGATCTTTCACCGCAGAACTCAAGAGGCTTCTCTGCTTTGCGGCTCCTATGGTTGCC 179
Query 192 GTGGTTATCATTCAGTTCATGATACAGATAATCTCAATGGTGATGGTGGGTCACCTCGGT 251
|||||||||| ||||| |||| ||||||| || |||||||||||||||| |||||||||
Sbjct 180 GTGGTTATCACTCAGTCCATGCTACAGATCATAACAATGGTGATGGTGGGACACCTCGGT 239
Query 252 AGA-CTCTCCCTCGCTAGCGCTTCCTTCG-CAGTCTCCTTCTGTAACGTCACTGGCTTCA 309
| | || |||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct 240 A-ATCTTTCCCTCGCTAGCGCTTCCTTCGCCA-TCTCCTTCTCTAACGTCACTGGCTTCA 297
Query 310 GCTTCATTATAGGATTGTCATGTGCCTTAGATACTTTGAGTGGTCAAGCTTATGGAGCTA 369
|||||||||| |||||||||| ||||||||||||| | || |||||||| ||||||||||
Sbjct 298 GCTTCATTATGGGATTGTCATCTGCCTTAGATACTCTCAGCGGTCAAGCCTATGGAGCTA 357
Query 370 AGCTATATCGGAAACTAGGTGTTCAGGCTTACACAGCTATGTTCTGTCTTACTTTAGTGT 429
||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |
Sbjct 358 AGCTATATCGGAAACTAGGTGTTCAAACTTACACGGCTATGTTCTGTCTTACATTAGTTT 417
Query 430 GTCTCCCTCTCTCTCTCCTATGGTTCAACATGGGAAAGCTTATTGTGATCCTTGGCCAAG 489
|||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 418 GTCTCCCTATCTCTCTCCTATGGTTCAACATGGGAAAGCTTCTCGTGATCCTTGGCCAAG 477
Query 490 ACCCTGCTATTGCTCACGAAGCTGGTAGATATGCCGCTTGGCTCATCCCAGGACTGTTCG 549
||||| | ||||| |||||||| || |||| ||| |||||||||||||| |||||||| |
Sbjct 478 ACCCTTCAATTGCACACGAAGCAGGAAGATTTGCTGCTTGGCTCATCCCTGGACTGTTTG 537
Query 550 CTTACGCCGTTCTTCAGCCGCTCATTCGCTACTTCAAAAACCAGAGCTTGATCACACCTC 609
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTACGCCGTTCTACAGCCGCTCATTCGCTACTTCAAAAACCAGAGCTTGATCACACCTC 597
Query 610 TCCTCGTCACCTCTTCTGTTGTGTTTTGTATCCACGTTCCTCTCTGCTGGCTTTTGGTTT 669
|| || ||||||||| ||||||||| ||| |||| |||||||| |||||| |||||||||
Sbjct 598 TCTTCATCACCTCTTGTGTTGTGTTCTGTCTCCATGTTCCTCTTTGCTGGATTTTGGTTT 657
Query 670 ATAAGTCAGGGCTTGGTCATATTGGAGGAGCCTTGGCTCTCAGCTTGTCATACTGGCTCT 729
|||||||||||| ||||||| |||||||||||||||||||||| || || |||||| | |
Sbjct 658 ATAAGTCAGGGCATGGTCATCTTGGAGGAGCCTTGGCTCTCAGTTTATCGTACTGGGTTT 717
Query 730 ATGCCA-TTTTCCTTGGATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCG 788
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTGCCAGTTTT-CTTGGATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCC 776
Query 789 CCGCT-TACCATGGAGATATTCGAGGGCGTTAGAGAGTT-TATCAAATATGCTCTTCCTT 846
||||| | |||||||||||||||| ||| || ||||||| | ||||||||||||||||||
Sbjct 777 CCGCTCT-CCATGGAGATATTCGACGGCATTGGAGAGTTCT-TCAAATATGCTCTTCCTT 834
Query 847 CTGCGGCTATGCTTTGCCTGGAGTGGTGGTCATATGAACTCATAATATTACTTTCTGGTC 906
|||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||| |
Sbjct 835 CTGCGGCTATGCTTTGTCTAGAGTGGTGGTCATATGAACTCGTAATATTACTCTCTGGGC 894
Query 907 TGTTACCCAACCCACAGCTGGAGACTTCTGTGCTCTCTATCTGTTTCGAAACACTTTCAA 966
| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
Sbjct 895 TCTTACCCAACCCACAGCTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACACTTTCGA 954
Query 967 TAACTTATTCAATACCACTAGCGATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAGT 1026
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 955 TAGCTTATTCAATACCACTAGCGATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAAT 1014
Query 1027 TAGGAGCTGGAAACTCTCGAGCAGCACATATTGTGGTCTATGCGGCAATGTCTCTTGCAG 1086
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 TAGGTGCTGGAAACTCTCGAGCAGCACATATTGTGGTCTACGCGGCAATGTCTCTTGCAG 1074
Query 1087 TAATGGATGCATTGATGGTGAGTATGTCTCTATTAGCCGGCAGGCATGTTTTCGGCCATG 1146
|||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||
Sbjct 1075 TAATGGATGCATTGATGGTGAGTACATCTCTATTAGTCGGCAGGAATCTTTTCGGCCATG 1134
Query 1147 TTTTCAGCAGTGACAAGAAAACCATCGAATATGTTGCAAAGATGGCTCCGTTGGTCTCTA 1206
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1135 TTTTCAGTAGTGACAAGAAAACCATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTA 1194
Query 1207 TTTCTATCATACTGGACAGTTTACAAGGGGTTCTCTCAGGTGTTGCAAGCGGATGCGGGT 1266
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1195 TTTCTCTCATACTGGACAGTTTACAAGGGGTTTTCTCAGGTGTTGCAAGCGGATGCGGGT 1254
Query 1267 GGCAGCATATAGGGGCTTACATAAACTTCGGAGCTTTCTATCTCTGGGGGATACCCATTG 1326
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1255 GGCAGCATATAGGGGCTTACATAAACTTTGGAGCTTTCTATCTCTGGGGGATACCCATTG 1314
Query 1327 CAGCATCTTTAGCCTTCTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATACTAG 1386
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTGCATCTTTAGCCTTCTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATACTAG 1374
Query 1387 CCGGTGCAGTTCTGCAGACTCTTCTGCTGGCTCTTGTCACAGGCTGCACAAACTGGAAAA 1446
| ||||| |||||||| |||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 1375 CTGGTGCCGTTCTGCAAACTCTTCTACTGGCTCTTTTCACAGGCTGTACAAACTGGAAAA 1434
Query 1447 CCCAGGCCCGTGAAGCGAGGGAGCGAATGGCTGTGGCCCATGAATCAGAACTTACAGAGT 1506
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1435 ACCAGGCCCGTGAAGCGAGGAAGCGAATGGCTGTGGCCCATGAATCAGAACTTACAGAGT 1494
Query 1507 CAGAACTTCCCATCTAAGATTACAGGGACACAGATGTTCCTCCTATTTTACCATTTTTGT 1566
||||||||||| | ||||||||| ||| |||||||||||||| |||||||||||| ||
Sbjct 1495 CAGAACTTCCCTTATAAGATTACGGGGGCACAGATGTTCCTCAGGTTTTACCATTTTGGT 1554
Query 1567 AGCAGCCAAATCGTTATATGTTACTGCTGGACTAGTGGTTGCCGTGAATAATTGGTCT 1624
||||||||||||||| |||||||||||| |||||||||| |||||||||||| |||||
Sbjct 1555 AGCAGCCAAATCGTTGTATGTTACTGCTTGACTAGTGGTAGCCGTGAATAATCGGTCT 1612
> Ahg471708 jgi|Araly1|471708|fgenesh2_kg.1__1662__AT1G15170.1
Length=1672
Score = 1779 bits (963), Expect = 0.0
Identities = 1363/1552 (88%), Gaps = 44/1552 (3%)
Strand=Plus/Plus
Query 90 CCGGTAGACAGAATTGAGAAAGTGACATGGAGAGATCTGCAAGACGGATCTTTCACCGCA 149
|||||||| || | ||||| ||||||||||||||||||| ||| || || ||||||| |
Sbjct 73 CCGGTAGAGAGGGTCGAGAACGTGACATGGAGAGATCTGCGAGATGGTTCATTCACCGTA 132
Query 150 GAACTCAAGAGGCTTATCTGCTTTGCGGCTCCTATGGCTGCCGTGGTTATCATTCAGTTC 209
||||||||||||||||||||||| || ||||||||||| || ||||| ||| |||||||
Sbjct 133 GAACTCAAGAGGCTTATCTGCTTCGCCGCTCCTATGGCGGCTGTGGTCATCGCTCAGTTC 192
Query 210 ATGATACAGATAATCTCAATGGTGATGGTGGGTCACCTCGGTAGA-CTCTCCCTCGCTAG 268
||| ||||||| | |||||| ||||||| ||||||||||| | | ||||||||||||||
Sbjct 193 ATGTTACAGATCGTTTCAATGATGATGGTTGGTCACCTCGGCA-ATCTCTCCCTCGCTAG 251
Query 269 CGCTTCCT-TCGCAGT-CTCCTTCTGTAACGTCACTGGCTTCAGCTTCATTATAGGATTG 326
|| | || |||| | ||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 252 TGCCT-CTCTCGC-CTCCTCTTTCTGCAACGTCACTGGCTTCAGCTTCATTATAGGACTG 309
Query 327 TCATGTGCCTTAGATACTTTGAGTGGTCAAGCTTATGGAGCTAAGCTATATCGGAAACTA 386
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 310 TCATGTGCCTTAGATACTTTGAGCGGTCAAGCTTATGGAGCTAAGCTCTATCGGAAACTA 369
Query 387 GGTGTTCAGGCTTACACAGCTATGTTCTGTCTTACTTTAGTGTGTCTCCCTCTCTCTCTC 446
|| |||||| |||||||||| |||||||||||| | ||||||||||||||||| ||||||
Sbjct 370 GGAGTTCAGACTTACACAGCAATGTTCTGTCTTGCATTAGTGTGTCTCCCTCTTTCTCTC 429
Query 447 CTATGGTTCAACATGGGAAAGCTTATTGTGATCCTTGGCCAAGACCCTGCTATTGCTCAC 506
| ||||||||||||| ||||||| || |||||||||||||||||||| ||||||| |||
Sbjct 430 ATTTGGTTCAACATGGAAAAGCTTCTTTTGATCCTTGGCCAAGACCCTTCTATTGCACAC 489
Query 507 GAAGCTGGTAGATATGCCGCTTGGCTCATCCCAGGACTGTTCGCTTACGCCGTTCTTCAG 566
||||| || |||||||| | ||||| |||||||||||||| |||||||| ||||| |||
Sbjct 490 GAAGCCGGAAGATATGCTACCTGGCTTATCCCAGGACTGTTTGCTTACGCTGTTCTACAG 549
Query 567 CCGCTCATTCGCTAC-TTCAAAAACCAGAGCTTGATCACACCTCTCCTCGTCACCTCTTC 625
|| |||| ||||||| ||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct 550 CCTCTCACTCGCTACTTTC-AAAACCAGAGCTTGATCACACCTCTACTCATCACCTCTTG 608
Query 626 TGTTGTGTTTTGTATCCACGTTCCTCTCTGCTGGCTTTTGGTTTATAAGTCAGGGCTTGG 685
||||||||| ||||||||||||||| ||||||||||||| ||||| || |||||||||||
Sbjct 609 TGTTGTGTTCTGTATCCACGTTCCTGTCTGCTGGCTTTTAGTTTACAATTCAGGGCTTGG 668
Query 686 TCATATTGGAGGAGCCTTGGCTCTCAGCTTGTCATACTGGCTCTATGCCATTTTCCTTGG 745
| || ||||||||||||||||| |||| || ||| |||||||||||||||||||||||||
Sbjct 669 TAATCTTGGAGGAGCCTTGGCTATCAGTTTATCAAACTGGCTCTATGCCATTTTCCTTGG 728
Query 746 ATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCGCCGCT-TACCATGGAGA 804
|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 729 ATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCCCCGCTCT-CCATGGAGA 787
Query 805 TATTCGAGGGCGTTAGAGAGTT-TATCAAATATGCTCTTCCTTCTGCGGCTATGCTTTGC 863
||||||| ||| || ||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 788 TATTCGACGGCATTGGAGAGTTCT-TCAAATATGCTCTTCCTTCTGCGGCTATGATTTGC 846
Query 864 CTGGAGTGGTGGTCATATGAACTCATAATATTACTTTCTGGTCTGTTACCCAACCCACAG 923
|| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 847 CTAGAGTGGTGGTCATACGAACTCATAATATTACTCTCTGGTCTCTTACCCAACCCACAA 906
Query 924 CTGGAGACTTCTGTGCTCTCTATCTGTTTCGAAACACTTTCAATAACT-TATTCAATACC 982
||||||||||||||||||||| ||||| || ||||| |||| | || | ||||| |||||
Sbjct 907 CTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACAATTTCGACAA-TGTATTCGATACC 965
Query 983 ACTAGCGATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAGTTAGGAGCTGGAAACTC 1042
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 966 ACTAGCGATCGCAGCTGCAGCAAGCACAAGAATCTCAAATGAGTTAGGTGCTGGAAACTC 1025
Query 1043 TCGAGCAGCACATATTGTGGTCTATGCGGCAATGTCTCTTGCAGTAATGGATGCATTGAT 1102
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1026 TCGAGCAGCACATATCGTGGTCTATGCGGCAATGTCTCTTGCAGTTATTGATGCATTGAT 1085
Query 1103 GGTGAGTATGTCTCTATTAGCCGGCAGGCATGTTTTCGGCCATGTTTTCAGCAGTGACAA 1162
||||||||||||||||||| ||||||| || ||||||| || ||||||||||||||||
Sbjct 1086 AGTGAGTATGTCTCTATTAGTCGGCAGGAATCTTTTCGGGCACATTTTCAGCAGTGACAA 1145
Query 1163 GAAAACCATCGAATATGTTGCAAAGATGGCTCCGTTGGTCTCTATTTCTATCATACTGGA 1222
| |||| ||||| |||||||||||||||||||| ||||||||||||||| |||| || ||
Sbjct 1146 GGAAACTATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATGCTAGA 1205
Query 1223 CAG-TTTACAAGGGGTTCTCTCAGGTGTTGCAAGCGGATGCGGGTGGCAGCATATAGGGG 1281
| |||||||||||||||||||||| ||||||| |||||||| ||||| |||||||| |
Sbjct 1206 T-GCTTTACAAGGGGTTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATAGGAG 1264
Query 1282 CTTACATAAACTTCGGAGCTTTCTATCTCTGGGGGATACCCATTGCAGCATCTTTAGCCT 1341
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1265 CTTACATAAACTTAGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCT 1324
Query 1342 TCTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATACTAGCCGGTGCAGTTCTGC 1401
| ||| |||||||||||||||||||||||||||| ||||| | ||||||||| |||||||
Sbjct 1325 TTTGGATTCATCTGAAAGGTGTTGGCCTTTGGATCGGAATCCAAGCCGGTGCCGTTCTGC 1384
Query 1402 AGACTCTTCTGCTGGCTCTTGTCACAGGCTGCACAAACTGG-AAAACCCAGGCCCGTGAA 1460
| || |||||||| ||||||||||| ||||||||||||||| |||||| ||||| ||||
Sbjct 1385 AAACGCTTCTGCTTGCTCTTGTCACGGGCTGCACAAACTGGGAAAACC-AGGCCAATGAA 1443
Query 1461 GCGAGGGAGCGAATGGCTGTGGCCCATG-AATCAG-AA--C-TTACAGAGTCAGAACTTC 1515
|||||| ||||||||| | ||||| ||| || | | || | || |||| ||| ||||
Sbjct 1444 GCGAGGAAGCGAATGGATTTGGCCTATGGAA-C-GTAAAGCGTTGCAGAA-CAGCACTTA 1500
Query 1516 CC-A-TCTAAGATTACAGGGACACAGATGTTCCTCCTATTTTACCATTTTTGT-AGCAGC 1572
|| | || | || | ||||| || |||||||||| ||| ||| | || || |||||
Sbjct 1501 CCGAGTC-A-GA--A--GGGAC-CATATGTTCCTCCGGTTTAACCCTGTT-GTTAGCAGT 1552
Query 1573 CAAATCG-T-TA-T--ATGTTACTGCTGGACTAGTGGTTGCCG-TGAATAAT 1618
||||| | | || | |||||||| |||||||||||| |||| | ||||||
Sbjct 1553 CAAATTGCTGTACTGTATGTTACTTTTGGACTAGTGGTAGCCGCT-AATAAT 1603
> Ahg471709 jgi|Araly1|471709|fgenesh2_kg.1__1663__AT1G15180.1
Length=1655
Score = 1709 bits (925), Expect = 0.0
Identities = 1331/1522 (87%), Gaps = 48/1522 (3%)
Strand=Plus/Plus
Query 90 CCGGTAGACAGAATTGAGAAAGTGACATGGAGAGATCTGCAAGACGGATCTTTCACCGCA 149
||||| || || ||||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 93 CCGGTGGAAAGGGTTGAGAACGTGACATGGAGAGATCTGCCAGACGGATCATTCACCGCT 152
Query 150 GAACTCAAGAGGCTTATCTGCTTTGCGGCTCCTATGGCTGCCGTGGTTATCATTCAGTTC 209
|||||||||||||| ||||||| || ||||||||||| || || |||| | |||||||
Sbjct 153 GAACTCAAGAGGCTCCTCTGCTTCGCCGCTCCTATGGCGGCTGTTGTTACCGCTCAGTTC 212
Query 210 ATGATACAGATAATCTCAATGGTGATGGTGGGTCACCTCGGTAGA-CTCTCCCTCGCTAG 268
||| | ||||| ||||||||||| ||||| |||||||| |||| | ||||||||||||||
Sbjct 213 ATGTTGCAGATCATCTCAATGGTTATGGTTGGTCACCTTGGTA-ATCTCTCCCTCGCTAG 271
Query 269 CGCTTCCT-TCGCAGT-CTCCTTCTGTAACGTCACTGGCTTCAGCTTCATTATAGGATTG 326
|| | || |||| | ||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 272 TGCCT-CTCTCGC-TTCCTCTTTCTGCAACGTCACTGGCTTCAGCTTCATTGTAGGATTG 329
Query 327 TCATGTGCCTTAGATACTTTGAGT-GGTCAAGCTTATGGAGCTAAGCTATATCGGAAACT 385
|||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| |
Sbjct 330 TCATGTGCCTTAGATACTTTGA-TCGGTCAAGCTTATGGAGCTAAGCTCTATCGGAAAGT 388
Query 386 AGGTGTTCAGGCTTACACAGCTATGTTCTGTCTTACTTTAGTGTGTCTCCCTCTCTCTCT 445
||| ||||||||||||||||| |||||||||||| | |||||||||||||||||| || |
Sbjct 389 AGGAGTTCAGGCTTACACAGCAATGTTCTGTCTTGCATTAGTGTGTCTCCCTCTCACTGT 448
Query 446 CCTATGGTTCAACATGGGAAA-GCTTATTGTGA-TCCTTGGCCAAGACCCTGCTATTGCT 503
| ||||||| ||||| ||||| |||| | || | ||||||||||||| ||| ||||||||
Sbjct 449 CATATGGTTAAACAT-GGAAACGCTTCTAGT-ATTCCTTGGCCAAGATCCTTCTATTGCT 506
Query 504 CACGAAGCTGGTAGATATGCCGCTTGGCTCATCCCAGGACTGTTCGCTTACGCCGTTCTT 563
|||||||| || |||||||| || || ||||||||||||||||| |||||||| |||||
Sbjct 507 CACGAAGCCGGCAGATATGCTGCCTGCCTCATCCCAGGACTGTTTGCTTACGCTGTTCTG 566
Query 564 CAGCCGCTCATTCGCTACTTCAAAAACCAGAGCTTGATCACACCTCTCCTCGTCACCTCT 623
|||||||||| |||||||||| ||||||||||| |||| |||||||||||| ||||||||
Sbjct 567 CAGCCGCTCACTCGCTACTTCCAAAACCAGAGCATGATTACACCTCTCCTCATCACCTCT 626
Query 624 TCTGTTGTGTTTTGTATCCACGTTCCTCTCTGCTGGCTTTTGGTTTATAAGTCAGGGCTT 683
| ||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 627 TGTGTTGTGTTCTGTCTCCACGTTCCTTTCTGCTGGCTTTTGGTTTACAAGTCAGGGCTT 686
Query 684 GGTCATATTGGAGGAGCCTTGGCTCTCAGCTTGTCATACTGGCTCTATGCCATTTTCCTT 743
||| || ||||||||||||| |||||||| |||||| |||| |||||| ||||| |||||
Sbjct 687 GGTAATCTTGGAGGAGCCTTAGCTCTCAGTTTGTCAAACTGTCTCTATACCATTATCCTT 746
Query 744 GGATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCGCCGCT-TACCATGGA 802
||||||||||||| |||||||||||||||||||||||||| || || || | |||||||
Sbjct 747 GGATCTTTCATGTGTTACTCCTCTGCCTGTTCTGAGACACGTGCACCACTCT-CCATGGA 805
Query 803 GATATTCGAGGGCGTTAGAGAGTT-TATCAAATATGCTCTTCCTTCTGCGGCTATGCTTT 861
||||||| | ||| || ||||||| | ||||||||||||| ||||||||||||||| |||
Sbjct 806 GATATTCCATGGCATTGGAGAGTTCT-TCAAATATGCTCTGCCTTCTGCGGCTATGATTT 864
Query 862 GCCTGGAGTGGTGGTCATATGAACTCATAATATTACTTTCTGGTCTGTTACCCAACCCAC 921
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 865 GCCTGGAGTGGTGGTCATACGAACTCATAATATTACTCTCTGGTCTCTTACCCAACCCAC 924
Query 922 AGCTGGAGACTTCTGTGCTCTCTATCTGTTTCGAAAC-ACTTTCAATAACT-TATTCAAT 979
| ||||||||||||||||||||| ||||| || |||| || | | | | | ||||| ||
Sbjct 925 AACTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACAAC-TGCGA-CAGTCTATTCGAT 982
Query 980 ACCA-CTAGCGATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAGTTAGGAGCTGGAA 1038
| || || ||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct 983 A-CATCTTGCGATTGCAGCAGCAGCAAGCACAAGAATCTCAAATGAATTAGGAGCTGGAA 1041
Query 1039 ACTCTCGAGCAGCACATATTGTGGTCTATGCGGCAATGTCTCTTGCAGTAATGGATG-CA 1097
||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| | ||
Sbjct 1042 ACTCTCGAGCAGCACATATTGTGGTCTATGCAGCAATGTGTCTTGCGGTAATGGA-GACA 1100
Query 1098 TTGATGGTGAGTA-TGTCTCTATTAGCCGGCAGGCATGTTTTCGGCCATGTTTTCAGCAG 1156
||||| |||||| | |||||||||| |||||| || ||||||||||||||||||||||
Sbjct 1101 TTGATATTGAGTACT-TCTCTATTAGTTGGCAGGAATCTTTTCGGCCATGTTTTCAGCAG 1159
Query 1157 TGACAAGAAAACCATCGAATATGTTGCAAAGATGGCTCCGTTGGTCTCTATTTCTATCAT 1216
||||||| | |||||||| |||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1160 TGACAAGGATACCATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCAT 1219
Query 1217 ACTGGACAGTTTACAAGGGGTTCTCTCAGGTGTTGCAAGCGGATGCGGGTGGCAGCATAT 1276
||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||| || ||
Sbjct 1220 ACTGGACGGTTTACAAGGGGTTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACAGAT 1279
Query 1277 AGGGGCTTACATAAACTTCGGAGCTTTCTATCTCTGGGGGATACCCATTGCAGCATCTTT 1336
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1280 AGGGGCTTACATAAACTTAGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTT 1339
Query 1337 AGCCTTCTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATACTAGCCGGTGCAGT 1396
|||||||||| ||||||||||||| |||||||||||||| ||||| | ||||||||| |
Sbjct 1340 AGCCTTCTGGATTCATCTGAAAGGGGTTGGCCTTTGGATCGGAATCCAAGCCGGTGCCCT 1399
Query 1397 TCTGCAGACTCTTCTGCTGGCTCTTGTCACAGGCTGCACAAACTGG-AAAACCCAGGCCC 1455
|||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1400 TCTGCAAACTCTTCTGCTGGCTCTTGTCACAGGCTGCACAAACTGGGAAAACC-AGGCC- 1457
Query 1456 G-TGAAGCGAGGGAGCGAATGGCTGTGGCCCATGAATCAGAACTTACAGA-G-T-CAGAA 1511
| |||||||||| ||||||||||| ||||| ||| |||| || || | | |||||
Sbjct 1458 GATGAAGCGAGGAAGCGAATGGCTTTGGCCTATG-----GAACGTA-AGGCGCTGCAGAA 1511
Query 1512 CTTCCCATCTAA-GATTACAGGGACACAGATGTTCCTCCTATTTTACCATTTTTGTAGCA 1570
| | |||| ||||| || ||| | |||||||||| |||||||||||||||||||
Sbjct 1512 C-----AGCTAAAGATTATAGAGACT-ATATGTTCCTCCGGTTTTACCATTTTTGTAGCA 1565
Query 1571 GCCAAATCGTT-ATATGTTACT 1591
| ||||| | | | ||||||||
Sbjct 1566 GACAAATTGGTGA-ATGTTACT 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5