BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15170.1
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471708 jgi|Araly1|471708|fgenesh2_kg.1__1662__AT1G15170.1 2519 0.0
Ahg471709 jgi|Araly1|471709|fgenesh2_kg.1__1663__AT1G15180.1 1932 0.0
Ahg471706 jgi|Araly1|471706|fgenesh2_kg.1__1660__AT1G15150.1 1714 0.0
> Ahg471708 jgi|Araly1|471708|fgenesh2_kg.1__1662__AT1G15170.1
Length=1672
Score = 2519 bits (1364), Expect = 0.0
Identities = 1589/1694 (94%), Gaps = 30/1694 (2%)
Strand=Plus/Plus
Query 23 TCTCTCTCTATCACTCTGCATTTAGCCATGGGAGACGCAGAGAG------CACTAAGGAT 76
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TCTCTCTCTATCTCTCTGCATTTAGCCATGGGAGACGCAGAGAGCACCACCACTAAGGAT 60
Query 77 CGCTTGCTGCTGCCGGTAGAGAGAGTCGAGAACGTGACATGGAGCGATCTGCGAGATGGT 136
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 AGCTTGCTGCTGCCGGTAGAGAGGGTCGAGAACGTGACATGGAGAGATCTGCGAGATGGT 120
Query 137 TCATTCACCGTAGAACTCAAAAGGCTTATCTTCTTCGCCGCTCCTATGGCTGCTGTTGTT 196
|||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||
Sbjct 121 TCATTCACCGTAGAACTCAAGAGGCTTATCTGCTTCGCCGCTCCTATGGCGGCTGTGGTC 180
Query 197 ATCGCTCAGTTCATGTTACAAATCGTTTCAATGATGATGGTTGGTCACCTCGGCAATCTC 256
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGCTCAGTTCATGTTACAGATCGTTTCAATGATGATGGTTGGTCACCTCGGCAATCTC 240
Query 257 TCCCTCGCTAGCGCCTCTCTCGCCTCCTCCTTCTGCAACGTCACTGGCTTCAGCTTCATC 316
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCCCTCGCTAGTGCCTCTCTCGCCTCCTCTTTCTGCAACGTCACTGGCTTCAGCTTCATT 300
Query 317 ATAGGATTGTCATGTGCCTTAGATACTTTGAGTGGTCAAGCTTATGGAGCTAAGCTATAC 376
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 301 ATAGGACTGTCATGTGCCTTAGATACTTTGAGCGGTCAAGCTTATGGAGCTAAGCTCTAT 360
Query 377 CGGAAACTAGGAGTTCAGACTTACACTGCTATGTTCTGTCTTGCATTAGTGTGTCTCCCT 436
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 CGGAAACTAGGAGTTCAGACTTACACAGCAATGTTCTGTCTTGCATTAGTGTGTCTCCCT 420
Query 437 CTTTCTCTCATTTGGTTCAACATGGAAAAGCTTCTTTTGATCCTTGGCCAAGACCCTTCT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTTCTCTCATTTGGTTCAACATGGAAAAGCTTCTTTTGATCCTTGGCCAAGACCCTTCT 480
Query 497 ATTGCTCACGAAGCCGGAAAATATGCCACCTGGCTTATCCCAGGACTGTTTGCTTACGCT 556
||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATTGCACACGAAGCCGGAAGATATGCTACCTGGCTTATCCCAGGACTGTTTGCTTACGCT 540
Query 557 GTTCTACAGCCGCTCACTCGCTACTTTCAAAACCAGAGTTTGATCACACCTCTCCTCATC 616
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 541 GTTCTACAGCCTCTCACTCGCTACTTTCAAAACCAGAGCTTGATCACACCTCTACTCATC 600
Query 617 ACCTCCTATGTTGTGTTCTGTATCCACGTTCCTCTCTGCTGGTTTTTGGTTTACAACTCA 676
||||| | ||||||||||||||||||||||||| |||||||| |||| |||||||| |||
Sbjct 601 ACCTCTTGTGTTGTGTTCTGTATCCACGTTCCTGTCTGCTGGCTTTTAGTTTACAATTCA 660
Query 677 GGGCTTGGTAATCTTGGAGGAGCTTTGGCTATCAGTTTGTCAAACTGGCTCTATGCCATT 736
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 661 GGGCTTGGTAATCTTGGAGGAGCCTTGGCTATCAGTTTATCAAACTGGCTCTATGCCATT 720
Query 737 TTCCTTGGATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGTGCGCCGCTCTCC 796
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 721 TTCCTTGGATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCCCCGCTCTCC 780
Query 797 ATGGAGATATTCGATGGCATTGGAGAGTTCTTCAAATATGCTCTTCCTTCTGCGGCTATG 856
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGGAGATATTCGACGGCATTGGAGAGTTCTTCAAATATGCTCTTCCTTCTGCGGCTATG 840
Query 857 ATTTGCCTAGAGTGGTGGTCTTATGAACTTATAATATTACTCTCTGGTCTCTTACCCAAC 916
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 841 ATTTGCCTAGAGTGGTGGTCATACGAACTCATAATATTACTCTCTGGTCTCTTACCCAAC 900
Query 917 CCACAACTGGAGACTTCTGTGCTCTCTGTCTGTCTTCAGACAATTTCAACAATGTATTCG 976
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 901 CCACAACTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACAATTTCGACAATGTATTCG 960
Query 977 ATACCACTAGCAATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAATTAGGTGCTGGA 1036
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 ATACCACTAGCGATCGCAGCTGCAGCAAGCACAAGAATCTCAAATGAGTTAGGTGCTGGA 1020
Query 1037 AACTCTCGAGCAGCACATATCGTGGTCTATGCGGCAATGTCTCTTGCAGTTATTGATGCA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AACTCTCGAGCAGCACATATCGTGGTCTATGCGGCAATGTCTCTTGCAGTTATTGATGCA 1080
Query 1097 TTGATAGTTAGTATGTCTCTACTAATCGGCAGGAATCTTTTCGGGCACATTTTCAGCAGT 1156
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1081 TTGATAGTGAGTATGTCTCTATTAGTCGGCAGGAATCTTTTCGGGCACATTTTCAGCAGT 1140
Query 1157 GACAAGGAAACTATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATG 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GACAAGGAAACTATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATG 1200
Query 1217 CTTGACGCTTTACAAGGGGTCCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATA 1276
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTAGATGCTTTACAAGGGGTTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATA 1260
Query 1277 GGAGCTTACATAAACTTAGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTA 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGAGCTTACATAAACTTAGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTA 1320
Query 1337 GCCTTCTGGATTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATCCAAGCCGGTGCCGTT 1396
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 GCCTTTTGGATTCATCTGAAAGGTGTTGGCCTTTGGATCGGAATCCAAGCCGGTGCCGTT 1380
Query 1397 CTGCAAACGCTTCTGCTTGCTCTTGTCACGGGCTGTACAAACTGGGAAAGCCAGGCCGAT 1456
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 1381 CTGCAAACGCTTCTGCTTGCTCTTGTCACGGGCTGCACAAACTGGGAAAACCAGGCCAAT 1440
Query 1457 AAAGCGAGGAATCGAATGGCTTTGGCCTATGGAACATAAGGCGCTGCAGAACAGCACTTA 1516
|||||||||| ||||||| ||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 1441 GAAGCGAGGAAGCGAATGGATTTGGCCTATGGAACGTAAAGCGTTGCAGAACAGCACTTA 1500
Query 1517 CAGAATCAGATCTCCGCGTCTGAAGATATAGGGACC-TGATGATCCTTCGGTTTTACCAT 1575
| | || | || | || | |||||| | ||| |||| |||||| ||| |
Sbjct 1501 C-----C-GA-----G--TC--A-GA-A--GGGACCAT-ATGTTCCTCCGGTTTAACCCT 1540
Query 1576 TTTGTTAGTAGTCAAATTGCTGTACTGTATGTTACTTTTGGACTAGTGGTAGCCGC-AAG 1634
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1541 GTTGTTAGCAGTCAAATTGCTGTACTGTATGTTACTTTTGGACTAGTGGTAGCCGCTAA- 1599
Query 1635 TAATATTGCATGGTTTTCCAAAAAGGAGCCTTTTCTCTGTTCTCAACAACAAAGAATAAT 1694
||||| |||||||| ||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 1600 TAATAGGGCATGGTTATCCAAAAAG-AGCCTTTTCTGTGTTCTCAATAACAAAGAATAAT 1658
Query 1695 GAACAGATTCACTG 1708
|| ||||||||||
Sbjct 1659 GATTAGATTCACTG 1672
> Ahg471709 jgi|Araly1|471709|fgenesh2_kg.1__1663__AT1G15180.1
Length=1655
Score = 1932 bits (1046), Expect = 0.0
Identities = 1336/1476 (91%), Gaps = 19/1476 (1%)
Strand=Plus/Plus
Query 47 GCCATGGGAGACGCAGAGAGCA-CT--AAGGA-TCGCTTGCTGCTGCCGGTAGAGAGAGT 102
|||||||||||||||||||||| || || | | |||||||||||||||| || || ||
Sbjct 48 GCCATGGGAGACGCAGAGAGCACCTCCAA-AACTAGCTTGCTGCTGCCGGTGGAAAGGGT 106
Query 103 CGAGAACGTGACATGGAGCGATCTGCGAGATGGTTCATTCACCG-TAGAACTCAAAAGGC 161
||||||||||||||||| ||||||| ||| || |||||||||| | |||||||| ||||
Sbjct 107 TGAGAACGTGACATGGAGAGATCTGCCAGACGGATCATTCACCGCT-GAACTCAAGAGGC 165
Query 162 TTATCTTCTTCGCCGCTCCTATGGCTGCTGTTGTTATCGCTCAGTTCATGTTACAAATCG 221
| ||| |||||||||||||||||| |||||||||| ||||||||||||||| || |||
Sbjct 166 TCCTCTGCTTCGCCGCTCCTATGGCGGCTGTTGTTACCGCTCAGTTCATGTTGCAGATCA 225
Query 222 TTTCAATGATGATGGTTGGTCACCTCGGCAATCTCTCCCTCGCTAGCGCCTCTCTCGCCT 281
| |||||| | |||||||||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 226 TCTCAATGGTTATGGTTGGTCACCTTGGTAATCTCTCCCTCGCTAGTGCCTCTCTCGCTT 285
Query 282 CCTCCTTCTGCAACGTCACTGGCTTCAGCTTCATCATAGGATTGTCATGTGCCTTAGATA 341
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 286 CCTCTTTCTGCAACGTCACTGGCTTCAGCTTCATTGTAGGATTGTCATGTGCCTTAGATA 345
Query 342 CTTTGAGT-GGTCAAGCTTATGGAGCTAAGCTATACCGGAAACTAGGAGTTCAGACTTAC 400
|||||| | ||||||||||||||||||||||| || |||||| ||||||||||| |||||
Sbjct 346 CTTTGA-TCGGTCAAGCTTATGGAGCTAAGCTCTATCGGAAAGTAGGAGTTCAGGCTTAC 404
Query 401 ACTGCTATGTTCTGTCTTGCATTAGTGTGTCTCCCTCTTTCTCTCATTTGGTTCAACATG 460
|| || |||||||||||||||||||||||||||||||| || |||| ||||| ||||||
Sbjct 405 ACAGCAATGTTCTGTCTTGCATTAGTGTGTCTCCCTCTCACTGTCATATGGTTAAACATG 464
Query 461 GAAAAGCTTCTTTTGA-TCCTTGGCCAAGACCCTTCTATTGCTCACGAAGCCGGAAAATA 519
|||| |||||| | | ||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 465 GAAACGCTTCTAGT-ATTCCTTGGCCAAGATCCTTCTATTGCTCACGAAGCCGGCAGATA 523
Query 520 TGCCACCTGGCTTATCCCAGGACTGTTTGCTTACGCTGTTCTACAGCCGCTCACTCGCTA 579
||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 524 TGCTGCCTGCCTCATCCCAGGACTGTTTGCTTACGCTGTTCTGCAGCCGCTCACTCGCTA 583
Query 580 CTTTCAAAACCAGAGTTTGATCACACCTCTCCTCATCACCTCCTATGTTGTGTTCTGTAT 639
||| ||||||||||| |||| |||||||||||||||||||| | ||||||||||||| |
Sbjct 584 CTTCCAAAACCAGAGCATGATTACACCTCTCCTCATCACCTCTTGTGTTGTGTTCTGTCT 643
Query 640 CCACGTTCCTCTCTGCTGGTTTTTGGTTTACAACTCAGGGCTTGGTAATCTTGGAGGAGC 699
|||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 644 CCACGTTCCTTTCTGCTGGCTTTTGGTTTACAAGTCAGGGCTTGGTAATCTTGGAGGAGC 703
Query 700 TTTGGCTATCAGTTTGTCAAACTGGCTCTATGCCATTTTCCTTGGATCTTTCATGTACTA 759
|| ||| |||||||||||||||| |||||| ||||| |||||||||||||||||| ||
Sbjct 704 CTTAGCTCTCAGTTTGTCAAACTGTCTCTATACCATTATCCTTGGATCTTTCATGTGTTA 763
Query 760 CTCCTCTGCCTGTTCTGAGACACGTGCGCCGCTCTCCATGGAGATATTCGATGGCATTGG 819
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 764 CTCCTCTGCCTGTTCTGAGACACGTGCACCACTCTCCATGGAGATATTCCATGGCATTGG 823
Query 820 AGAGTTCTTCAAATATGCTCTTCCTTCTGCGGCTATGATTTGCCTAGAGTGGTGGTCTTA 879
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 824 AGAGTTCTTCAAATATGCTCTGCCTTCTGCGGCTATGATTTGCCTGGAGTGGTGGTCATA 883
Query 880 TGAACTTATAATATTACTCTCTGGTCTCTTACCCAACCCACAACTGGAGACTTCTGTGCT 939
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CGAACTCATAATATTACTCTCTGGTCTCTTACCCAACCCACAACTGGAGACTTCTGTGCT 943
Query 940 CTCTGTCTGTCTTCAGACAATTTCAACAATGTATTCGATACCA-CTAGCAATCGCGGCTG 998
|||||||||||| || |||| | | ||| | ||||||||| || || || || || || |
Sbjct 944 CTCTGTCTGTCTCCAAACAACTGCGACAGTCTATTCGATA-CATCTTGCGATTGCAGCAG 1002
Query 999 CAGCAAGCACAAGAATCTCAAATGAATTAGGTGCTGGAAACTCTCGAGCAGCACATATCG 1058
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1003 CAGCAAGCACAAGAATCTCAAATGAATTAGGAGCTGGAAACTCTCGAGCAGCACATATTG 1062
Query 1059 TGGTCTATGCGGCAATGTCTCTTGCAGTTATTGATG-CATTGATAGTT-AGTA-TGTCTC 1115
|||||||||| ||||||| |||||| || || || | |||||||| || |||| | ||||
Sbjct 1063 TGGTCTATGCAGCAATGTGTCTTGCGGTAATGGA-GACATTGATA-TTGAGTACT-TCTC 1119
Query 1116 TACTAATCGGCAGGAATCTTTTCGGGCACATTTTCAGCAGTGACAAGGAAACTATCGACT 1175
|| || | ||||||||||||||||| || ||||||||||||||||||| || |||||||
Sbjct 1120 TATTAGTTGGCAGGAATCTTTTCGGCCATGTTTTCAGCAGTGACAAGGATACCATCGACT 1179
Query 1176 ATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATGCTTGACGCTTTACAAGGGG 1235
|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 1180 ATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATACTGGACGGTTTACAAGGGG 1239
Query 1236 TCCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATAGGAGCTTACATAAACTTAG 1295
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1240 TTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACAGATAGGGGCTTACATAAACTTAG 1299
Query 1296 GAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTTCTGGATTCATCTGA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTTCTGGATTCATCTGA 1359
Query 1356 AAGGTGTTGGCCTTTGGATTGGAATCCAAGCCGGTGCCGTTCTGCAAACGCTTCTGCTTG 1415
|||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||| |
Sbjct 1360 AAGGGGTTGGCCTTTGGATCGGAATCCAAGCCGGTGCCCTTCTGCAAACTCTTCTGCTGG 1419
Query 1416 CTCTTGTCACGGGCTGTACAAACTGGGAAAGCCAGGCCGATAAAGCGAGGAATCGAATGG 1475
|||||||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 1420 CTCTTGTCACAGGCTGCACAAACTGGGAAAACCAGGCCGATGAAGCGAGGAAGCGAATGG 1479
Query 1476 CTTTGGCCTATGGAACATAAGGCGCTGCAGAACAGC 1511
|||||||||||||||| |||||||||||||||||||
Sbjct 1480 CTTTGGCCTATGGAACGTAAGGCGCTGCAGAACAGC 1515
> Ahg471706 jgi|Araly1|471706|fgenesh2_kg.1__1660__AT1G15150.1
Length=1612
Score = 1714 bits (928), Expect = 0.0
Identities = 1355/1556 (87%), Gaps = 49/1556 (3%)
Strand=Plus/Plus
Query 89 CCGGTAGAGAGAGTCGAGAACGTGACATGGAGCGATCTGCGAGATGGTTCATTCACCGTA 148
|||||||| ||||| || || ||||||||||| ||||||| |||||| || ||||||| |
Sbjct 78 CCGGTAGACAGAGTTGATAAAGTGACATGGAGAGATCTGCAAGATGGATCTTTCACCGCA 137
Query 149 GAACTCAAAAGGCTTATCTTCTTCGCCGCTCCTATGGCTGCTGTTGTTATCGCTCAGTTC 208
|||||||| |||||| ||| ||| || |||||||||| ||| || |||||| |||||| |
Sbjct 138 GAACTCAAGAGGCTTCTCTGCTTTGCGGCTCCTATGGTTGCCGTGGTTATCACTCAGTCC 197
Query 209 ATGTTACAAATCGTTTCAATGATGATGGTTGGTCACCTCGGCAATCTCTCCCTCGCTAGC 268
||| |||| ||| | ||||| ||||||| || |||||||| ||||| ||||||||||||
Sbjct 198 ATGCTACAGATCATAACAATGGTGATGGTGGGACACCTCGGTAATCTTTCCCTCGCTAGC 257
Query 269 GCCT-CTCTCGCC-TCCTCCTTCTGC-AACGTCACTGGCTTCAGCTTCATCATAGGATTG 325
|| | || ||||| | |||||||| | ||||||||||||||||||||||| || ||||||
Sbjct 258 GCTTCCT-TCGCCAT-CTCCTTCT-CTAACGTCACTGGCTTCAGCTTCATTATGGGATTG 314
Query 326 TCATGTGCCTTAGATACTTTGAGTGGTCAAGCTTATGGAGCTAAGCTATACCGGAAACTA 385
|||| ||||||||||||| | || |||||||| ||||||||||||||||| |||||||||
Sbjct 315 TCATCTGCCTTAGATACTCTCAGCGGTCAAGCCTATGGAGCTAAGCTATATCGGAAACTA 374
Query 386 GGAGTTCAGACTTACACTGCTATGTTCTGTCTTGCATTAGTGTGTCTCCCTCTTTCTCTC 445
|| ||||| |||||||| ||||||||||||||| ||||||| ||||||||| | ||||||
Sbjct 375 GGTGTTCAAACTTACACGGCTATGTTCTGTCTTACATTAGTTTGTCTCCCTATCTCTCTC 434
Query 446 ATTTGGTTCAACATGGAAAAGCTTCTTTTGATCCTTGGCCAAGACCCTTCTATTGCTCAC 505
| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 435 CTATGGTTCAACATGGGAAAGCTTCTCGTGATCCTTGGCCAAGACCCTTCAATTGCACAC 494
Query 506 GAAGCCGGAAAATATGCCACCTGGCTTATCCCAGGACTGTTTGCTTACGCTGTTCTACAG 565
||||| |||| || ||| | ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 495 GAAGCAGGAAGATTTGCTGCTTGGCTCATCCCTGGACTGTTTGCTTACGCCGTTCTACAG 554
Query 566 CCGCTCACTCGCTACTTTC-AAAACCAGAGTTTGATCACACCTCTCCTCATCACCTCCTA 624
||||||| ||||||| ||| |||||||||| ||||||||||||||| |||||||||| |
Sbjct 555 CCGCTCATTCGCTAC-TTCAAAAACCAGAGCTTGATCACACCTCTCTTCATCACCTCTTG 613
Query 625 TGTTGTGTTCTGTATCCACGTTCCTCTCTGCTGGTTTTTGGTTTACAACTCAGGGCTTGG 684
||||||||||||| |||| |||||||| |||||| |||||||||| || ||||||| |||
Sbjct 614 TGTTGTGTTCTGTCTCCATGTTCCTCTTTGCTGGATTTTGGTTTATAAGTCAGGGCATGG 673
Query 685 TAATCTTGGAGGAGCTTTGGCTATCAGTTTGTCAAACTGGCTCTATGCCA-TTTTCCTTG 743
| ||||||||||||| |||||| ||||||| || ||||| | | ||||| |||| ||||
Sbjct 674 TCATCTTGGAGGAGCCTTGGCTCTCAGTTTATCGTACTGGGTTTCTGCCAGTTTT-CTTG 732
Query 744 GATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGTGCGCCGCTCTCCATGGAGA 803
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 733 GATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCCCCGCTCTCCATGGAGA 792
Query 804 TATTCGATGGCATTGGAGAGTTCTTCAAATATGCTCTTCCTTCTGCGGCTATGATTTGCC 863
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 793 TATTCGACGGCATTGGAGAGTTCTTCAAATATGCTCTTCCTTCTGCGGCTATGCTTTGTC 852
Query 864 TAGAGTGGTGGTCTTATGAACTTATAATATTACTCTCTGGTCTCTTACCCAACCCACAAC 923
||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 853 TAGAGTGGTGGTCATATGAACTCGTAATATTACTCTCTGGGCTCTTACCCAACCCACAGC 912
Query 924 TGGAGACTTCTGTGCTCTCTGTCTGTCTTCAGACAATTTCAACA-ATGTATTCGATACCA 982
|||||||||||||||||||||||||||| || ||| |||| | | | ||||| ||||||
Sbjct 913 TGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACACTTTCGATAGCT-TATTCAATACCA 971
Query 983 CTAGCAATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAATTAGGTGCTGGAAACTCT 1042
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 CTAGCGATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAATTAGGTGCTGGAAACTCT 1031
Query 1043 CGAGCAGCACATATCGTGGTCTATGCGGCAATGTCTCTTGCAGTTATTGATGCATTGATA 1102
|||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1032 CGAGCAGCACATATTGTGGTCTACGCGGCAATGTCTCTTGCAGTAATGGATGCATTGATG 1091
Query 1103 GTTAGTATGTCTCTACTAATCGGCAGGAATCTTTTCGGGCACATTTTCAGCAGTGACAAG 1162
|| |||| |||||| || ||||||||||||||||||| || ||||||| |||||||||
Sbjct 1092 GTGAGTACATCTCTATTAGTCGGCAGGAATCTTTTCGGCCATGTTTTCAGTAGTGACAAG 1151
Query 1163 GAAACTATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATGCTTGAC 1222
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1152 AAAACCATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATACTGGAC 1211
Query 1223 -GCTTTACAAGGGGTCCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATAGGAGC 1281
| |||||||||||| |||||||| ||||||| |||||||| ||||| |||||||| ||
Sbjct 1212 AG-TTTACAAGGGGTTTTCTCAGGTGTTGCAAGCGGATGCGGGTGGCAGCATATAGGGGC 1270
Query 1282 TTACATAAACTTAGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTT 1341
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TTACATAAACTTTGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTT 1330
Query 1342 CTGGATTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATCCAAGCCGGTGCCGTTCTGCA 1401
|||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1331 CTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATACTAGCTGGTGCCGTTCTGCA 1390
Query 1402 AACGCTTCTGCTTGCTCTTGTCACGGGCTGTACAAACTGGGAAAGCCAGGCC-GATAAAG 1460
||| ||||| || |||||| |||| ||||||||||||||| ||| ||||||| | | |||
Sbjct 1391 AACTCTTCTACTGGCTCTTTTCACAGGCTGTACAAACTGGAAAAACCAGGCCCG-TGAAG 1449
Query 1461 CGAGGAATCGAATGGCTTTGGCCTATGGAACATAAGGCGCTGCAGAACAGCACTTACAGA 1520
||||||| ||||||||| ||||| ||| || | | ||||| |||||||
Sbjct 1450 CGAGGAAGCGAATGGCTGTGGCCCATG-AA--T----C-----AGAAC-----TTACAGA 1492
Query 1521 ATCAGATCT-CCGCGTCTGAAGATATA-GGGA-C-CTGATGATCCTTC-GGTTTTACCAT 1575
||||| || || | | | ||||| || ||| | | |||| |||| | |||||||||||
Sbjct 1493 GTCAGAACTTCC-CTTAT-AAGAT-TACGGGGGCACAGATGTTCCT-CAGGTTTTACCAT 1548
Query 1576 TTTGTTAGTAGTCAAATTGCTGTACTGTATGTTACTT-TTGGACTAGTGGTAGCCG 1630
|||| ||| || ||||| | || ||||||||||| ||| ||||||||||||||
Sbjct 1549 TTTGGTAGCAGCCAAAT--C-GT--TGTATGTTACTGCTTG-ACTAGTGGTAGCCG 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5