BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15180.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471709 jgi|Araly1|471709|fgenesh2_kg.1__1663__AT1G15180.1 2497 0.0
Ahg471708 jgi|Araly1|471708|fgenesh2_kg.1__1662__AT1G15170.1 2084 0.0
Ahg471706 jgi|Araly1|471706|fgenesh2_kg.1__1660__AT1G15150.1 1748 0.0
> Ahg471709 jgi|Araly1|471709|fgenesh2_kg.1__1663__AT1G15180.1
Length=1655
Score = 2497 bits (1352), Expect = 0.0
Identities = 1560/1660 (94%), Gaps = 15/1660 (1%)
Strand=Plus/Plus
Query 23 AAACATTCTCTCTATCTCCCTCCGGCTAGGC----T-GTAGCTGTTCGCCATGGGAGACG 77
||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1 AAACACTCTCTATATCTCCCTCCGGCTAGGCTGTGTAGTAGCTGTTCGCCATGGGAGACG 60
Query 78 CAGAGAGCACCTCCAAAACTAGCTTGCTGCTCCCGGTGGAAAGAGTTGAAAACGTGACAT 137
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 61 CAGAGAGCACCTCCAAAACTAGCTTGCTGCTGCCGGTGGAAAGGGTTGAGAACGTGACAT 120
Query 138 GGAGAGATCTGCGAGATGGATTATTCACCGCAGAACTCAAGAGGCTTATCTGCTTTGCCG 197
|||||||||||| ||| |||| ||||||||| |||||||||||||| ||||||| ||||
Sbjct 121 GGAGAGATCTGCCAGACGGATCATTCACCGCTGAACTCAAGAGGCTCCTCTGCTTCGCCG 180
Query 198 CTCCTATGGCGGCTGTTGTTATCGCTCAGTTCATGTTGCAGATCATCTCAATGGTGATGG 257
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CTCCTATGGCGGCTGTTGTTACCGCTCAGTTCATGTTGCAGATCATCTCAATGGTTATGG 240
Query 258 TTGGTCACCTCGGAAATCTCTCCCTCGCTAGTGCCTCTCTCGCCTCCTCCTTCTGCAACG 317
|||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 241 TTGGTCACCTTGGTAATCTCTCCCTCGCTAGTGCCTCTCTCGCTTCCTCTTTCTGCAACG 300
Query 318 TCACCGGCTTCAGCTTCATCGTAGGATTGTCATGTGCCTTAGATACTTTGAGT-GGTCAA 376
|||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct 301 TCACTGGCTTCAGCTTCATTGTAGGATTGTCATGTGCCTTAGATACTTTGA-TCGGTCAA 359
Query 377 GCTTATGGAGCTAAGCTATATCGGAAAGTAGGAGTTCAGACTTACACAGCAATGTTCTGT 436
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 GCTTATGGAGCTAAGCTCTATCGGAAAGTAGGAGTTCAGGCTTACACAGCAATGTTCTGT 419
Query 437 CTTGCATTAGTATGTCTCCCTCTCACTCTCATATGGTTAAACATGGAAACGCTTCTTGTA 496
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 420 CTTGCATTAGTGTGTCTCCCTCTCACTGTCATATGGTTAAACATGGAAACGCTTCTAGTA 479
Query 497 TTCCTTGGCCAAGATCCTTCTATTGCTCACGAAGCCGGCAGATATGCTGCTTGCCTCATC 556
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 TTCCTTGGCCAAGATCCTTCTATTGCTCACGAAGCCGGCAGATATGCTGCCTGCCTCATC 539
Query 557 CCAGGACTGTTTGCTTACGCTGTTCTACAGCCTCTCACTCGCTACTTCCAAAACCAGAGC 616
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 540 CCAGGACTGTTTGCTTACGCTGTTCTGCAGCCGCTCACTCGCTACTTCCAAAACCAGAGC 599
Query 617 ATGATTACACCTCTCCTCATCACCTCTTGTTTTGTGTTCTGTCTCCATGTTCCTCTCTGC 676
|||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 600 ATGATTACACCTCTCCTCATCACCTCTTGTGTTGTGTTCTGTCTCCACGTTCCTTTCTGC 659
Query 677 TGGCTTTTGGTTTATAAGTCAGGGCTTGGTAATCTTGGAGGAGCCTTAGCTCTCAGTTTT 736
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGCTTTTGGTTTACAAGTCAGGGCTTGGTAATCTTGGAGGAGCCTTAGCTCTCAGTTTG 719
Query 737 TCGAACTGTCTTTATACCATTATCCTTGGATCTTTAATGTGCTT-CTCCTCTGCCTGTTC 795
|| |||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 720 TCAAACTGTCTCTATACCATTATCCTTGGATCTTTCATGTG-TTACTCCTCTGCCTGTTC 778
Query 796 TGAGACACGCGCACCGCTCTCCATGGAGATATTTGACGGCATTGGAGAGTTCTTCAGATA 855
||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 779 TGAGACACGTGCACCACTCTCCATGGAGATATTCCATGGCATTGGAGAGTTCTTCAAATA 838
Query 856 TGCTCTTCCTTCTGCGGCTATGATTTGCCTGGAGTGGTGGTCATATGAACTCATAATATT 915
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TGCTCTGCCTTCTGCGGCTATGATTTGCCTGGAGTGGTGGTCATACGAACTCATAATATT 898
Query 916 ACTCTCTGGTCTCTTACCCAACCCACAGCTGGAGACTTCTGTGCTCTCTGTCTGTCTCCA 975
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 899 ACTCTCTGGTCTCTTACCCAACCCACAACTGGAGACTTCTGTGCTCTCTGTCTGTCTCCA 958
Query 976 AACAACTGCGACAGTCTATTCGATACATCTTGCAATCGCAGCTGCAGCAAGCACAAGAAT 1035
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 959 AACAACTGCGACAGTCTATTCGATACATCTTGCGATTGCAGCAGCAGCAAGCACAAGAAT 1018
Query 1036 CTCAAATGAGTTAGGTGCTGGAAACTCTCGAGCAGCTA-ATATTGTGGTCTACGCAGCAA 1094
||||||||| ||||| |||||||||||||||||||| | ||||||||||||| |||||||
Sbjct 1019 CTCAAATGAATTAGGAGCTGGAAACTCTCGAGCAGC-ACATATTGTGGTCTATGCAGCAA 1077
Query 1095 TGTCTCTTGCAGTAGTGGAAATATTAATATTGAGTACTTCTCTATTAGTCGGCAGGAATG 1154
||| |||||| ||| |||| | ||| ||||||||||||||||||||||| |||||||||
Sbjct 1078 TGTGTCTTGCGGTAATGGAGACATTGATATTGAGTACTTCTCTATTAGTTGGCAGGAATC 1137
Query 1155 TTTTCGGCCATGTTTTCAGCAGTGACAAGGAAACCATCGACTATGTTGCAAAGATGGCTC 1214
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1138 TTTTCGGCCATGTTTTCAGCAGTGACAAGGATACCATCGACTATGTTGCAAAGATGGCTC 1197
Query 1215 CATTGGTCTCTATTTCTCTCATACTGGACGGTTTACAAGGGGTTCTCTCAGGTATTGCAA 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CATTGGTCTCTATTTCTCTCATACTGGACGGTTTACAAGGGGTTCTCTCAGGTATTGCAA 1257
Query 1275 GGGGATGCGGATGGCAACATATAGGAGCTTACATAAACTTAGGAGCTTTCTATCTCTGGG 1334
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1258 GGGGATGCGGATGGCAACAGATAGGGGCTTACATAAACTTAGGAGCTTTCTATCTCTGGG 1317
Query 1335 GGATACCCATTGCTGCATCTTTAGCCTTCTGGATTCATCTGAAAGGTGTTGGCCTTTGGA 1394
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 GGATACCCATTGCTGCATCTTTAGCCTTCTGGATTCATCTGAAAGGGGTTGGCCTTTGGA 1377
Query 1395 TTGGAATCCAAGCCGGTGCCGTTCTGCAAACGCTTCTGCTTACTCTTGTCACGGGCTGCA 1454
| |||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||
Sbjct 1378 TCGGAATCCAAGCCGGTGCCCTTCTGCAAACTCTTCTGCTGGCTCTTGTCACAGGCTGCA 1437
Query 1455 CAAACTGGGAAAGCCAGGCCGATAAAGCGAGAAATCGAATGGCTTTGGCCTATGGAACGT 1514
|||||||||||| |||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 1438 CAAACTGGGAAAACCAGGCCGATGAAGCGAGGAAGCGAATGGCTTTGGCCTATGGAACGT 1497
Query 1515 AAGGCGCTGCAGAACAGCTAAAGATCATAGTGAGC-ATAGGTTCCTCCGGTTTTACCAGT 1573
||||||||||||||||||||||||| |||| || | ||| |||||||||||||||||| |
Sbjct 1498 AAGGCGCTGCAGAACAGCTAAAGATTATAGAGA-CTATATGTTCCTCCGGTTTTACCATT 1556
Query 1574 TTTGTAGCAGACGAATTGCTGTATGTTACTTTGTGGTTATTGGAAGGT-TTGGTTGTAAT 1632
|||||||||||| ||||| || |||||||||||||| || || ||||| ||| |||||||
Sbjct 1557 TTTGTAGCAGACAAATTGGTGAATGTTACTTTGTGGCTAGTGAAAGGTCTTG-TTGTAAT 1615
Query 1633 AATACTGCACAATTTTCATCAGTATTAATAAGCATCCTTC 1672
||||||||| |||||||||||||| |||||||||||||||
Sbjct 1616 AATACTGCATAATTTTCATCAGTAGTAATAAGCATCCTTC 1655
> Ahg471708 jgi|Araly1|471708|fgenesh2_kg.1__1662__AT1G15170.1
Length=1672
Score = 2084 bits (1128), Expect = 0.0
Identities = 1415/1552 (91%), Gaps = 25/1552 (2%)
Strand=Plus/Plus
Query 65 GCCATGGGAGACGCAGAGAGCACCTCCA--AA--ACTAGCTTGCTGCTCCCGGTGGAAAG 120
|||||||||||||||||||||||| ||| || | |||||||||||| ||||| || ||
Sbjct 25 GCCATGGGAGACGCAGAGAGCACCACCACTAAGGA-TAGCTTGCTGCTGCCGGTAGAGAG 83
Query 121 AGTTGAAAACGTGACATGGAGAGATCTGCGAGATGGATT-ATTCACCGCAGAACTCAAGA 179
|| || ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 84 GGTCGAGAACGTGACATGGAGAGATCTGCGAGATGG-TTCATTCACCGTAGAACTCAAGA 142
Query 180 GGCTTATCTGCTTTGCCGCTCCTATGGCGGCTGTTGTTATCGCTCAGTTCATGTTGCAGA 239
||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 143 GGCTTATCTGCTTCGCCGCTCCTATGGCGGCTGTGGTCATCGCTCAGTTCATGTTACAGA 202
Query 240 TCATCTCAATGGTGATGGTTGGTCACCTCGGAAATCTCTCCCTCGCTAGTGCCTCTCTCG 299
|| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 203 TCGTTTCAATGATGATGGTTGGTCACCTCGGCAATCTCTCCCTCGCTAGTGCCTCTCTCG 262
Query 300 CCTCCTCCTTCTGCAACGTCACCGGCTTCAGCTTCATCGTAGGATTGTCATGTGCCTTAG 359
||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 263 CCTCCTCTTTCTGCAACGTCACTGGCTTCAGCTTCATTATAGGACTGTCATGTGCCTTAG 322
Query 360 ATACTTTGAGTGGTCAAGCTTATGGAGCTAAGCTATATCGGAAAGTAGGAGTTCAGACTT 419
|||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 323 ATACTTTGAGCGGTCAAGCTTATGGAGCTAAGCTCTATCGGAAACTAGGAGTTCAGACTT 382
Query 420 ACACAGCAATGTTCTGTCTTGCATTAGTATGTCTCCCTCTCACTCTCATATGGTTAAACA 479
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||
Sbjct 383 ACACAGCAATGTTCTGTCTTGCATTAGTGTGTCTCCCTCTTTCTCTCATTTGGTTCAACA 442
Query 480 TGGAAACGCTTCTTGT-ATTCCTTGGCCAAGATCCTTCTATTGCTCACGAAGCCGGCAGA 538
|||||| ||||||| | | ||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 443 TGGAAAAGCTTCTTTTGA-TCCTTGGCCAAGACCCTTCTATTGCACACGAAGCCGGAAGA 501
Query 539 TATGCTGCTTGCCTCATCCCAGGACTGTTTGCTTACGCTGTTCTACAGCCTCTCACTCGC 598
|||||| | || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TATGCTACCTGGCTTATCCCAGGACTGTTTGCTTACGCTGTTCTACAGCCTCTCACTCGC 561
Query 599 TACTTCCAAAACCAGAGCATGATTACACCTCTCCTCATCACCTCTTGTTTTGTGTTCTGT 658
||||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||||
Sbjct 562 TACTTTCAAAACCAGAGCTTGATCACACCTCTACTCATCACCTCTTGTGTTGTGTTCTGT 621
Query 659 CTCCATGTTCCTCTCTGCTGGCTTTTGGTTTATAAGTCAGGGCTTGGTAATCTTGGAGGA 718
|||| |||||| ||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 622 ATCCACGTTCCTGTCTGCTGGCTTTTAGTTTACAATTCAGGGCTTGGTAATCTTGGAGGA 681
Query 719 GCCTTAGCTCTCAGTTTTTCGAACTGTCTTTATACCATTATCCTTGGATCTTTAATGTGC 778
||||| ||| ||||||| || ||||| || ||| ||||| ||||||||||||| |||| |
Sbjct 682 GCCTTGGCTATCAGTTTATCAAACTGGCTCTATGCCATTTTCCTTGGATCTTTCATGTAC 741
Query 779 TTCTCCTCTGCCTGTTCTGAGACACGCGCACCGCTCTCCATGGAGATATTTGACGGCATT 838
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 742 TACTCCTCTGCCTGTTCTGAGACACGCGCCCCGCTCTCCATGGAGATATTCGACGGCATT 801
Query 839 GGAGAGTTCTTCAGATATGCTCTTCCTTCTGCGGCTATGATTTGCCTGGAGTGGTGGTCA 898
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 802 GGAGAGTTCTTCAAATATGCTCTTCCTTCTGCGGCTATGATTTGCCTAGAGTGGTGGTCA 861
Query 899 TATGAACTCATAATATTACTCTCTGGTCTCTTACCCAACCCACAGCTGGAGACTTCTGTG 958
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 862 TACGAACTCATAATATTACTCTCTGGTCTCTTACCCAACCCACAACTGGAGACTTCTGTG 921
Query 959 CTCTCTGTCTGTCTCCAAACAACTGCGACAGTCTATTCGATA-CATCTTGCAATCGCAGC 1017
|||||||||||||||||||||| | ||||| | ||||||||| || || || ||||||||
Sbjct 922 CTCTCTGTCTGTCTCCAAACAATTTCGACAATGTATTCGATACCA-CTAGCGATCGCAGC 980
Query 1018 TGCAGCAAGCACAAGAATCTCAAATGAGTTAGGTGCTGGAAACTCTCGAGCAGCTA-ATA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 981 TGCAGCAAGCACAAGAATCTCAAATGAGTTAGGTGCTGGAAACTCTCGAGCAGC-ACATA 1039
Query 1077 TTGTGGTCTACGCAGCAATGTCTCTTGCAG-TAGTGGAAATATTAATATTGAGTACT-TC 1134
| |||||||| || |||||||||||||||| || | || ||| ||| |||||| | ||
Sbjct 1040 TCGTGGTCTATGCGGCAATGTCTCTTGCAGTTA-TTGATGCATTGATAGTGAGTA-TGTC 1097
Query 1135 TCTATTAGTCGGCAGGAATGTTTTCGGCCATGTTTTCAGCAGTGACAAGGAAACCATCGA 1194
||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||||
Sbjct 1098 TCTATTAGTCGGCAGGAATCTTTTCGGGCACATTTTCAGCAGTGACAAGGAAACTATCGA 1157
Query 1195 CTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATACTGGACGGTTTACAAGG 1254
|||||||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct 1158 CTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATGCTAGATGCTTTACAAGG 1217
Query 1255 GGTTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATAGGAGCTTACATAAACTT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GGTTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATAGGAGCTTACATAAACTT 1277
Query 1315 AGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTTCTGGATTCATCT 1374
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1278 AGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTAGCCTTTTGGATTCATCT 1337
Query 1375 GAAAGGTGTTGGCCTTTGGATTGGAATCCAAGCCGGTGCCGTTCTGCAAACGCTTCTGCT 1434
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GAAAGGTGTTGGCCTTTGGATCGGAATCCAAGCCGGTGCCGTTCTGCAAACGCTTCTGCT 1397
Query 1435 TACTCTTGTCACGGGCTGCACAAACTGGGAAAGCCAGGCCGATAAAGCGAGAAATCGAAT 1494
| |||||||||||||||||||||||||||||| ||||||| || ||||||| || |||||
Sbjct 1398 TGCTCTTGTCACGGGCTGCACAAACTGGGAAAACCAGGCCAATGAAGCGAGGAAGCGAAT 1457
Query 1495 GGCTTTGGCCTATGGAACGTAAGGCGCTGCAGAACAGC--TAAA-GA-TCATA-GTGAGC 1549
|| ||||||||||||||||||| ||| ||||||||||| | | || ||| | | || |
Sbjct 1458 GGATTTGGCCTATGGAACGTAAAGCGTTGCAGAACAGCACTTACCGAGTCAGAAGGGACC 1517
Query 1550 ATAGGTTCCTCCGGTTTTACCAGTTTTGT-AGCAGACGAATTGCTGTA-TGT 1599
||| ||||||||||||| ||| | |||| ||||| | |||||||||| |||
Sbjct 1518 ATATGTTCCTCCGGTTTAACCC-TGTTGTTAGCAGTCAAATTGCTGTACTGT 1568
> Ahg471706 jgi|Araly1|471706|fgenesh2_kg.1__1660__AT1G15150.1
Length=1612
Score = 1748 bits (946), Expect = 0.0
Identities = 1336/1520 (88%), Gaps = 44/1520 (3%)
Strand=Plus/Plus
Query 110 CCGGTGGAAAGAGTTGA-AAACGTGACATGGAGAGATCTGCGAGATGGAT-TATTCACCG 167
||||| || |||||||| ||| ||||||||||||||||||| |||||||| | |||||||
Sbjct 78 CCGGTAGACAGAGTTGATAAA-GTGACATGGAGAGATCTGCAAGATGGATCT-TTCACCG 135
Query 168 CAGAACTCAAGAGGCTTATCTGCTTTGCCGCTCCTATGGCGGCTGTTGTTATCGCTCAGT 227
||||||||||||||||| |||||||||| |||||||||| || || |||||| ||||||
Sbjct 136 CAGAACTCAAGAGGCTTCTCTGCTTTGCGGCTCCTATGGTTGCCGTGGTTATCACTCAGT 195
Query 228 TCATGTTGCAGATCATCTCAATGGTGATGGTTGGTCACCTCGGAAATCTCTCCCTCGCTA 287
|||| | |||||||| ||||||||||||| || |||||||| ||||| ||||||||||
Sbjct 196 CCATGCTACAGATCATAACAATGGTGATGGTGGGACACCTCGGTAATCTTTCCCTCGCTA 255
Query 288 GTGCCT-CTCTCGCC-TCCTCCTTCTGC-AACGTCACCGGCTTCAGCTTCATCGTAGGAT 344
| || | || ||||| | |||||||| | |||||||| |||||||||||||| | ||||
Sbjct 256 GCGCTTCCT-TCGCCAT-CTCCTTCT-CTAACGTCACTGGCTTCAGCTTCATTATGGGAT 312
Query 345 TGTCATGTGCCTTAGATACTTTGAGTGGTCAAGCTTATGGAGCTAAGCTATATCGGAAAG 404
|||||| ||||||||||||| | || |||||||| ||||||||||||||||||||||||
Sbjct 313 TGTCATCTGCCTTAGATACTCTCAGCGGTCAAGCCTATGGAGCTAAGCTATATCGGAAAC 372
Query 405 TAGGAGTTCAGACTTACACAGCAATGTTCTGTCTTGCATTAGTATGTCTCCCTCTCACTC 464
|||| ||||| |||||||| || |||||||||||| ||||||| ||||||||| || |||
Sbjct 373 TAGGTGTTCAAACTTACACGGCTATGTTCTGTCTTACATTAGTTTGTCTCCCTATCTCTC 432
Query 465 TCATATGGTTAAACAT-GGAAACGCTTCTTGT-ATTCCTTGGCCAAGATCCTTCTATTGC 522
|| ||||||| ||||| ||||| |||||| || | ||||||||||||| ||||| |||||
Sbjct 433 TCCTATGGTTCAACATGGGAAA-GCTTCTCGTGA-TCCTTGGCCAAGACCCTTCAATTGC 490
Query 523 TCACGAAGCCGGCAGATATGCTGCTTGCCTCATCCCAGGACTGTTTGCTTACGCTGTTCT 582
|||||||| || |||| ||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 491 ACACGAAGCAGGAAGATTTGCTGCTTGGCTCATCCCTGGACTGTTTGCTTACGCCGTTCT 550
Query 583 ACAGCCTCTCACTCGCTACTTCCAAAACCAGAGCATGATTACACCTCTCCTCATCACCTC 642
|||||| |||| |||||||||| ||||||||||| |||| ||||||||| ||||||||||
Sbjct 551 ACAGCCGCTCATTCGCTACTTCAAAAACCAGAGCTTGATCACACCTCTCTTCATCACCTC 610
Query 643 TTGTTTTGTGTTCTGTCTCCATGTTCCTCTCTGCTGGCTTTTGGTTTATAAGTCAGGGCT 702
|||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 611 TTGTGTTGTGTTCTGTCTCCATGTTCCTCTTTGCTGGATTTTGGTTTATAAGTCAGGGCA 670
Query 703 TGGTAATCTTGGAGGAGCCTTAGCTCTCAGTTTTTCGAACTGTCTTTATACCA-TTATCC 761
|||| |||||||||||||||| ||||||||||| ||| |||| ||| | ||| || | |
Sbjct 671 TGGTCATCTTGGAGGAGCCTTGGCTCTCAGTTTATCGTACTGGGTTTCTGCCAGTT-TTC 729
Query 762 TTGGATCTTTAATGTGCTTCTCCTCTGCCTGTTCTGAGACACGCGCACCGCTCTCCATGG 821
|||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 730 TTGGATCTTTCATGTACTACTCCTCTGCCTGTTCTGAGACACGCGCCCCGCTCTCCATGG 789
Query 822 AGATATTTGACGGCATTGGAGAGTTCTTCAGATATGCTCTTCCTTCTGCGGCTATGATTT 881
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 790 AGATATTCGACGGCATTGGAGAGTTCTTCAAATATGCTCTTCCTTCTGCGGCTATGCTTT 849
Query 882 GCCTGGAGTGGTGGTCATATGAACTCATAATATTACTCTCTGGTCTCTTACCCAACCCAC 941
| || ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 850 GTCTAGAGTGGTGGTCATATGAACTCGTAATATTACTCTCTGGGCTCTTACCCAACCCAC 909
Query 942 AGCTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAACAAC-TGCGACAGTC-TATTCGAT 999
||||||||||||||||||||||||||||||||||||| || | ||| || | ||||| ||
Sbjct 910 AGCTGGAGACTTCTGTGCTCTCTGTCTGTCTCCAAAC-ACTTTCGATAG-CTTATTCAAT 967
Query 1000 A-CATCTTGCAATCGCAGCTGCAGCAAGCACAAGAATCTCAAATGAGTTAGGTGCTGGAA 1058
| || || || ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 968 ACCA-CTAGCGATCGCGGCTGCAGCAAGCACAAGAATCTCAAATGAATTAGGTGCTGGAA 1026
Query 1059 ACTCTCGAGCAGCTA-ATATTGTGGTCTACGCAGCAATGTCTCTTGCAGTAGTGGAAATA 1117
||||||||||||| | |||||||||||||||| |||||||||||||||||| |||| |
Sbjct 1027 ACTCTCGAGCAGC-ACATATTGTGGTCTACGCGGCAATGTCTCTTGCAGTAATGGATGCA 1085
Query 1118 TTAATATTGAGTACTTCTCTATTAGTCGGCAGGAATGTTTTCGGCCATGTTTTCAGCAGT 1177
|| || ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1086 TTGATGGTGAGTACATCTCTATTAGTCGGCAGGAATCTTTTCGGCCATGTTTTCAGTAGT 1145
Query 1178 GACAAGGAAACCATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATA 1237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GACAAGAAAACCATCGACTATGTTGCAAAGATGGCTCCATTGGTCTCTATTTCTCTCATA 1205
Query 1238 CTGGACGGTTTACAAGGGGTTCTCTCAGGTATTGCAAGGGGATGCGGATGGCAACATATA 1297
|||||| |||||||||||||| |||||||| ||||||| |||||||| ||||| ||||||
Sbjct 1206 CTGGACAGTTTACAAGGGGTTTTCTCAGGTGTTGCAAGCGGATGCGGGTGGCAGCATATA 1265
Query 1298 GGAGCTTACATAAACTTAGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTA 1357
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGGGCTTACATAAACTTTGGAGCTTTCTATCTCTGGGGGATACCCATTGCTGCATCTTTA 1325
Query 1358 GCCTTCTGGATTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATCCAAGCCGGTGCCGTT 1417
||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 1326 GCCTTCTGGGTTCATCTGAAAGGTGTTGGCCTTTGGATTGGAATACTAGCTGGTGCCGTT 1385
Query 1418 CTGCAAACGCTTCTGCTTACTCTTGTCACGGGCTGCACAAACTGGGAAAGCCAGGCC-GA 1476
|||||||| ||||| || ||||| |||| ||||| ||||||||| ||| ||||||| |
Sbjct 1386 CTGCAAACTCTTCTACTGGCTCTTTTCACAGGCTGTACAAACTGGAAAAACCAGGCCCG- 1444
Query 1477 TAAAGCGAGAAATCGAATGGCTTTGGCCTATG-----GAACGTA-AGGCGCTGCAGAACA 1530
| ||||||| || ||||||||| ||||| ||| |||| || || | | ||||||
Sbjct 1445 TGAAGCGAGGAAGCGAATGGCTGTGGCCCATGAATCAGAACTTACAGA-G-T-CAGAACT 1501
Query 1531 GC--T-A-AAGATCATAGTGAGCATAG--GTTCCTCCGGTTTTACCAGTTTTG-TAGCAG 1583
| | | ||||| | | | ||| || ||||||| |||||||||| ||||| ||||||
Sbjct 1502 TCCCTTATAAGATTACGGGG-GCACAGATGTTCCTCAGGTTTTACCA-TTTTGGTAGCAG 1559
Query 1584 ACGAATTGCTGTATGTTACT 1603
| ||| | |||||||||||
Sbjct 1560 CCAAATCGTTGTATGTTACT 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5