BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15190.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471711 jgi|Araly1|471711|fgenesh2_kg.1__1665__AT1G15190.1 1432 0.0
> Ahg471711 jgi|Araly1|471711|fgenesh2_kg.1__1665__AT1G15190.1
Length=1090
Score = 1432 bits (775), Expect = 0.0
Identities = 987/1083 (91%), Gaps = 39/1083 (4%)
Strand=Plus/Plus
Query 4 TTCAGCTTATAAGCAGATATTGTTTAGACATATATT-AGCTCAACATATAAAATCTAGCA 62
||||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||
Sbjct 1 TTCAGTTTATAAGCAGATA-ACACTAGACATATATTAAGCTCAAAATA-AAAATCTAGCA 58
Query 63 TTATAGGAAGCGCGGaaaaaaaCTAAAACCCAATAAATTCTTGGACTGTAACAGAATCCA 122
|| |||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 59 TTTTAGGAAGCGCGG---------AAAA---AA-AAATTCTTGGACTGTAACAGAATCCA 105
Query 123 GAAGTTCCCAAGATTCGCTTCCCCTATAAAACCCAATCATAACCGCTTTTTTC--T-TTC 179
||| ||||||||||||| |||||||||||||| ||||||||||||||||||| | |||
Sbjct 106 GAACCTCCCAAGATTCGCATCCCCTATAAAACCAAATCATAACCGCTTTTTTCTTTCTTC 165
Query 180 TTCGTCTTCCATTTTACTCTCTTCGACCTCACAAATCACAACAATGGCGAAAATCTCGAG 239
||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct 166 TTCTTCTTCCATTTTACTCTCTTCGACCTCAAAAATCACAAAAATGGCGAACATCTCGAG 225
Query 240 CGCTTCTTGTTTCAGAGCCATCTTTCTCGGAGCTCTCATCATCCTCTGTCTCCCTCATCC 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 226 CGCTTCTTGTTTCAGAGCCATCTTTCTCGGAGCTCTCATCATCCTCTGTCTTCCTCATCC 285
Query 300 CTCCACCGGCGTTCCTTTGGAAGAGTTAGAAAGAGCCATCGCCATCCTCCGCGTCAGAGG 359
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 286 TTCTACCGGCGTTCCTTTGGAAGAGTTAGAAAGAGCCATCGCCGTCCTCCGCGTCAGAGG 345
Query 360 TCGTGCTCTCTTCGCCAATGCCATCATCACCTCCGATCTTCTCTTCGATCTACTCTCCGA 419
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 346 CCGTGCTCTATTCGCCAACGCCATCATCACCTCCGATCTCCTCTTCGATCTACTCTCCGA 405
Query 420 CGAGTCTCTCACTCTCTTCGCCCCCACCGATTCCATGCTCTTCGATCTCGACATGACTCA 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 406 CGAGTCTCTCACTCTCTTCGCCCCCACCGATTCCATGCTCTTCGCTCTCGACATGACTCA 465
Query 480 TTCTCTTCCGTTCTACGTTTCTACTCTCCGCctccactcggtacctctccgactctcact 539
||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 466 TTCTCTTCCCTTCTACGTTTCGACTCTCCGCCTCCACTCCGTACCACTCCGCCTCTCACT 525
Query 540 ttctggtctccgatctctccccaactcctcctctctcccgacgcttctcccatctcatcg 599
|| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 526 CTCCGATCTCCGATCTCTCCCCAACGCCTCCTCTATCCCGACGCTTCTCCCATCTCATCG 585
Query 600 cctccttctcACTAAGCATTCTTCCTCCAACGATTCCATTTTTCTCGACGGCGTTCAACT 659
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 586 CCTCCTTCTCACTAAGCTTTCTTCCTCCAACGACTCCATTTTTCTCGACGGTGTTCAACT 645
Query 660 TCTCATCCCTGGTTTGTTCGATGGTCAACATATTGCCGTACACGGTCTCGCCGATCTTCT 719
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 646 TCTCCTCCCTGGTTTGTTCGATGGTCAACATATCGCTGTACACGGTCTCGCCGATCTTCT 705
Query 720 TCCCCTCACTGCTCCTTCATCCCCCAATCGTCTCGTGGAAGATTCGACGGCACTGGCAAA 779
||||||||| || ||||| || ||||||||||||||||| |||||| ||||||||||| |
Sbjct 706 TCCCCTCACCGCCCCTTCGTCTCCCAATCGTCTCGTGGAGGATTCGGCGGCACTGGCAGA 765
Query 780 GTCACCATGGTTTTTAGGTTCAAGATTTTCACCGGCACCAGAGCCTTACTTCGCCTTTAT 839
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GTCACCGTGGTTTTTAGGTTCAAGATTTTCACCGGCACCAGAGCCTTACTTCGCCTTTAT 825
Query 840 GGATCTTTCACCAGCAGAATCGCCGAGTGTTGAGGAAGTTTCACCATCGCCGTCGTGGGG 899
||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 826 GGATCTTTCACCAGCGGAGTCGCCGACTGTTGAGGAAGTTTCACCATCGCCGTCGTGGGG 885
Query 900 AGAAGGAGAAGAAGATTTCATCGTAGGCGATGAAGGAGGTCCGTTAGATGGGAGGAATAA 959
||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGAAG-A--------TTTCATCGTAGGCGATGAAGGAGGTCCGTTAGATGGGAGGAATAA 936
Query 960 CGGCTTTTGATGTACACGTGTCGAAATCTCTGTAAAACACCTAGCACGTGTCTTTGACTC 1019
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 937 CGGCTTTTGATGTACACGTGTCGTGATCTCTGTAAAACACCTAACACGTGTC-----CT- 990
Query 1020 TTTGTAAAGTCAAAAGAGTCctttcttctt-ctttttttggtcaaaa-gagtcctttgtt 1077
| ||||||||||||||||| ||||||||| ||||||| |||||||| |||||||| ||
Sbjct 991 T--GTAAAGTCAAAAGAGTCTTTTCTTCTTTCTTTTTT-GGTCAAAAAGAGTCCTTCCTT 1047
Query 1078 ttt 1080
|||
Sbjct 1048 TTT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5