BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15215.2
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334813 jgi|Araly1|334813|fgenesh1_pg.C_scaffold_1001378 813 0.0
> Ahg334813 jgi|Araly1|334813|fgenesh1_pg.C_scaffold_1001378
Length=831
Score = 813 bits (440), Expect = 0.0
Identities = 577/638 (90%), Gaps = 29/638 (5%)
Strand=Plus/Plus
Query 170 AGTTGTTCTGTGAATCGGAATGGCAAATCCTCTATAACCTGGAAACAGGTACAGATTTGG 229
||||||||||||||||||||||| |||||| | |||||||||||||| |||||| ||||
Sbjct 220 AGTTGTTCTGTGAATCGGAATGGAAAATCCACGGTAACCTGGAAACAGATACAGAGTTGG 279
Query 230 TTCCAGGAGAAGCTGAAGCATCAAAGC-CAACCAAAATCCAAAACTTTGCCATCTCCCCC 288
|||||||||||||||||||| | || | ||||| |||| |||||||||||||||||||||
Sbjct 280 TTCCAGGAGAAGCTGAAGCAGC-AATCTCAACCCAAATTCAAAACTTTGCCATCTCCCCC 338
Query 289 TTTGCAGATTCATGACTTATCTAATCCCAGTTCTTATGCTTCAAATGCCTCAAATGCTAC 348
||| | || || | || || | ||||| | | ||| || || || |
Sbjct 339 TTT---G---CA-GA--T-TC--AT----G-ACTTAT-C-T--AAT-CC-CAGTTG-T-- 372
Query 349 CTTTGTTGGGAATTCTACCTTTGTTCAAACACGAAAAGGCAAGGCCTCTGATTTAGCTGA 408
| || || ||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 373 -TATGCTGCAAATGCTACCTTTGTTCAAACACGAAAAGGTAAAGCCTCTGATTTAGCTGA 431
Query 409 TCTGGCTTTTGAGGCTAAATCAGCGCGGGACTACGCGTGGTATGACGTGTCTTCGTTCCT 468
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 432 TCTGGCTTTTGAGGCTAAATCAGCACGGGACTACGCGTGGTATGACGTGTCTTCGTTCCT 491
Query 469 TACTTATAGAGTTCTTCGCACTGGTGAACTGGAAGTGCGTGTACGGTTTTCTGGGTTCGA 528
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 492 TACTTATAGAGTTCTTCGCACTGGTGAACTGGAAGTGCGTGTACGCTTTTCTGGGTTCGA 551
Query 529 CAACCGACACGATGAGTGGGTAAACGTCAAAACATCAGTGCGTGAGCGGTCTATTCCTGT 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CAACCGACACGATGAGTGGGTAAACGTCAAAACATCAGTGCGTGAGCGGTCTATTCCTGT 611
Query 589 AGAACCATCAGAGTGTGGGAGAGTGAACGTTGGAGACCTGCTTCTATGTTTCCAAGAAAG 648
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 612 AGAACCATCAGAGTGTGGGAGAGTGAATGTTGGAGACCTGCTTCTATGTTTCCAAGAAAG 671
Query 649 AGAGGATCAAGCACTCTACTGTGATGGTCATGTTTTGAATATCAAGAGAGGGATTCATGA 708
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 672 GGAGGATCAAGCACTGTACTGTGATGGTCATGTTGTGAATATCAAGAGAGGGATTCATGA 731
Query 709 TCACGCGAGATGTAACTGCGTGTTTCTTGTTCGCTACGAGCTTGACAATACAGAGGAATC 768
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 732 TCACGGGAGATGTAACTGCGTGTTTCTTGTTCGCTACGACCTTGACAATACAGAGGAACC 791
Query 769 GCTGGGACTAGAAAGAATTTGCCGCCGCCCTGAAGAGT 806
|||||| ||||||||||||||||||||||||| ||||
Sbjct 792 TCTGGGATTAGAAAGAATTTGCCGCCGCCCTGATGAGT 829
Score = 152 bits (82), Expect = 5e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 84 AGATTGTAGACATGGAGAATCTGTATAAGGAGCTCGGTGACCAATCTCTCCACAAAGATT 143
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 104 AGATTGTAGACATGGAGAATCTGTATAAGGAGCTCGGTGATCAATCTCTCCACAAAGATT 163
Query 144 TCTGTCAAACTGTTGCCTCTACTTTTAG 171
||||||||||||||||||| ||||||||
Sbjct 164 TCTGTCAAACTGTTGCCTCCACTTTTAG 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5