BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15220.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471717 jgi|Araly1|471717|fgenesh2_kg.1__1671__AT1G15220.2 1064 0.0
> Ahg471717 jgi|Araly1|471717|fgenesh2_kg.1__1671__AT1G15220.2
Length=1129
Score = 1064 bits (576), Expect = 0.0
Identities = 704/762 (92%), Gaps = 24/762 (3%)
Strand=Plus/Plus
Query 415 CAGCGCAATGGAGAAAACAGACGAAGAGAGGAAGAAGGCTCAGATGCTGGACGCTCGGGC 474
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CAGTGCAATGGAGAAAACAGACGAAGAGAGGAAGAAGGCTCAGATGCTGGACGCTCGGGC 306
Query 475 CAGAAACATTAGCCACAATGTTCGCTGCACTGAGTGTGGAAGTCAGTCCATTGAAGACTC 534
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 307 CAGAAACATTAGCCACAATGTTCGATGCACTGAGTGTGGAAGTCAGTCCATTGAAGACTC 366
Query 535 GCAGGCAGATATCGCTATTCTCCTTAGACAGCTGATCCGTAATGAGATAGGAGCTGGAAA 594
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 367 GCAGGCAGATATCGCTATTCTCCTTAGACAGTTGATCCGTGATGAGATAGGAGCTGGAAA 426
Query 595 AACTGACAAAGAGATCTACAGTAAGCTGGAGGATGAATTTGGGGAGACAGTGCTTTATGC 654
|||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||
Sbjct 427 AACTGACAAAGAGATCTACAATAAGCTCGAGGATGAGTTTGGGGAGACTGTGCTTTATGC 486
Query 655 CCCAAAATTTGATTTGCAGACCGCAGCCTTGTGGCTCACACCGGTTATAATTGCTGGAGG 714
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 487 CCCAAAATTTGATTTGCAGACCGCGGCCTTGTGGCTCACACCGGTTATAATTGCTGGAGG 546
Query 715 TACCGCTGCAGGAATAGTTTACCAGAAGCACAGGCTAAGGAAAAATGTAGACATCATGGC 774
|||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 547 TACCGCTGCAGGGTTGGTTTACCAGAAGCACAGGCAAAGAAAAAATGTAGACATCATGGC 606
Query 775 GTTGAACCTTATTAGAGGTGTACCATTGACTCCAAAAGAGAGAGTTACCATTCTTGATGT 834
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 607 GTTGAACCTTATTCGAGGTGTACCATTGACTCCAAAAGAGAGAGTTACCATTCTAGATGT 666
Query 835 TCTTATTCCACCTTCCCCTCCTCCTCAGGGAGTTGTTTCCCGATTGAGGAGATGGCTCAA 894
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 667 TCTTATTCCACCTTCCCCTCCTCCTCAGGGAGTTGCTTCCCGATTGAGGAGATGGCTAAA 726
Query 895 CCGGTAGTTCCCGTGTCTCCTTAGCTCTCTTGTTCTTGGCTCGAATCTTGTTGTGTTAAC 954
||| |||||||||| ||||||||||||||||||||||||| | || |
Sbjct 727 CCGTTAGTTCCCGTATCTCCTTAGCTCTCTTGTTCTTGGC-C-AA------------A-- 770
Query 955 AAGTAAACAATGTGTTGAAAAGAGTGAGTACACATTGATTGTCTTGGAGAAACAGATAGG 1014
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 771 ---TAAACAATGTGTTGAAAGGAGTAAGTACACATTGATTGTCTAAGAGAAACAGATAGG 827
Query 1015 GACTGCTTTGCATCCATTACAAGCAAATGGATTCTTCTGTAGAAG-ATCTTGGGATGAGA 1073
||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 828 GACTGCTTTGCATCCGTTACAAGCAAATGGATTCTTCTATAGAATTATCTTGGGATGAGA 887
Query 1074 TATGTATCGA-GAAAGCATTATTGAAAGTGTGATACTTGTTGTACCTTTGCTGTGTGATT 1132
||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 888 TATGTAT-GAAGAAAGAATTATTGAAAGTGTGATACTTGTTGTATCTTTGCTGTGTGCTT 946
Query 1133 GAATACAGAGAGCGGGTCGAT-AGTTATATTACTTTCGGCAC 1173
|||||||||||| |||||| | | |||| |||||| ||||||
Sbjct 947 GAATACAGAGAGTGGGTCGTTGA-TTATGTTACTTCCGGCAC 987
Score = 333 bits (180), Expect = 2e-90
Identities = 231/254 (91%), Gaps = 10/254 (4%)
Strand=Plus/Plus
Query 45 GCACGCTCTTTCACGCGCCTTTTCGATTTCACATTCGGATCCGATTTGTTCACCCGCCGA 104
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCACGCTCCTTCACGCGCCTTTTCGATTTCACATTCGGATCCGATTTGTTCACCCGCCGG 60
Query 105 AGATCCACCGGCATCTTCTCTAAACGGCTCTGTCG-AGAAGGATCGGCGCTATTATTGCT 163
||||||||||||||| |||||||||||||||| || |||||||||||||| || ||||
Sbjct 61 AGATCCACCGGCATCATCTCTAAACGGCTCTGGCGAAGAAGGATCGGCGC---TACTGCT 117
Query 164 GGAGGACGATTGGGTGTTTACTTTTTACTAGTAAACGGAGT-AATTTCCCAAGCGAAAGG 222
|||||||||| | ||||||| |||||| |||||||||| | ||||||| ||||||||||
Sbjct 118 GGAGGACGATAAGCTGTTTACGTTTTACAAGTAAACGGA-TAAATTTCCAAAGCGAAAGG 176
Query 223 TTTCATTTTTGAGCTCCACGTTGAACGAACTAAGCGGTTTCTCGGAGT-TC--TCTTGCT 279
||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||
Sbjct 177 TTTCATTTTTGAGCTCCACGTTGAACGAACTAAACGGTTTCTCGGA-TCTCACTCTTGCT 235
Query 280 TCCTCTCCACCCAG 293
||||||| ||||||
Sbjct 236 TCCTCTCGACCCAG 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5