BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15230.1

Length=1030
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920427 jgi|Araly1|920427|scaffold_101708.1                        654    0.0  


> Ahg920427 jgi|Araly1|920427|scaffold_101708.1
Length=509

 Score =  654 bits (354),  Expect = 0.0
 Identities = 450/497 (91%), Gaps = 4/497 (1%)
 Strand=Plus/Plus

Query  22   CTCTGCATCTATGGAGGCTACGAAAGAA-AGAGTTGGCTTGCTCGATACGATCCTCCCGC  80
            |||||||||||||||||||||||||||| | ||| || |||||||| | |||||||||||
Sbjct  12   CTCTGCATCTATGGAGGCTACGAAAGAACA-AGTCGGTTTGCTCGACAAGATCCTCCCGC  70

Query  81   CGGCACTTGCAGACGCCGGTCTCGAGGATTGTGCTCTGCCGCCGGAATCTATTCAGGAAG  140
            |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  71   CGGCCCTTGCAGACGCCGGGCTCGAAGATTGTGCTCTGCCGCCGGAATCTATTCAGGAAG  130

Query  141  CATTTCGCAAAGCCGCTAACGCCGTGAAGTCTCGCGCAGCGTCGATATTCGACCACGAGG  200
            |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct  131  CATTTCGCAAAGCCGCCAACGCCGTGAAGTCTCGCGCAGCCTCGATTTTCGAACACGAGG  190

Query  201  AGGAAGACGGTTGTTTAGCGGATCCTATTCCGGAAACTGCAGACAAGATTATCGTTGGAG  260
            |||||| ||||||| |||||||||| ||||||||| || | |||| ||| ||  | || |
Sbjct  191  AGGAAGGCGGTTGTGTAGCGGATCCGATTCCGGAAGCTTCTGACACGATCATTATCGGCG  250

Query  261  GAGACAATGAAAGGGATACTGGGCCGTGTTTAGCTGGAAAAGGCATTGAGAAGTTGGCTG  320
            | || ||||||||||||||||||||||||||||| ||||| |||| || |||||||||||
Sbjct  251  GGGATAATGAAAGGGATACTGGGCCGTGTTTAGCCGGAAAGGGCAATGTGAAGTTGGCTG  310

Query  321  AATCG-AAACAGGCCGGAGATTTGGTGGTGGCTGGCGAAGGAGAAGAAGGGAAGAGCTGC  379
            ||||| ||| |||||||||||||||| || || |||||||||| |||||||| |||||| 
Sbjct  311  AATCGGAAA-AGGCCGGAGATTTGGTTGTAGCAGGCGAAGGAGGAGAAGGGAGGAGCTGT  369

Query  380  GTTGATGGTTTGAAGGATCTAGATGTtgaaggtattgagagaagcagtgagaagaaggat  439
            |||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||
Sbjct  370  GTTGATGGTTTGAAGGATTTAGATGTCGAAGGTATTGAGAGCAGCGGTGAGAAGAAGGAT  429

Query  440  cagagtgatgaagatgaagaagaggagatgaaACCGATCTTGGTTGAAGGATTTGTCTGA  499
            |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  430  CAGAGTGAAGAAGACGAAGACGAGGAGATGAAACCGATCTTGGTTGAAGGATTTGTCTGA  489

Query  500  GAGTCCTCACATTGTCA  516
            || ||||||||||||||
Sbjct  490  GATTCCTCACATTGTCA  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38313531585


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5