BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15240.2
Length=3412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911328 jgi|Araly1|911328|Al_scaffold_0001_1582 4283 0.0
> Ahg911328 jgi|Araly1|911328|Al_scaffold_0001_1582
Length=2850
Score = 4283 bits (2319), Expect = 0.0
Identities = 2678/2849 (94%), Gaps = 33/2849 (1%)
Strand=Plus/Plus
Query 350 ATGAGCACCCAGAAGCAAGTGGTGACTATTCGGGACCTGGTAGATGAAGCCAAGAAACGA 409
||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||||||
Sbjct 1 ATGAGCACCCAGAAGCAGGGGGTGACTGTTCGGGACCTGGTAGAGGAAGCCAAGAAACGA 60
Query 410 ATTGTAATCGTGGTCATATGCGTCGTCGGACTTTCCTACCTCATGTCCCTGACAAGTTCA 469
||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATTGTAATCCTTGTGATATGCGTCGTCGGACTGTCCTACCTCATGTCCCTGACAAGTTCA 120
Query 470 TCGGTTTTGGTTAACCTTACTCCTGCTGTGT-TATTGATCATCCTT-TTTCGTTATTACA 527
||||||| ||| ||||| || |||||| || | |||||||| ||| ||||||||| |
Sbjct 121 TCGGTTTGGGTAAACCTCCCTGCTGCTGCGTGT-TTGATCAT-CTTCCTTCGTTATTTCT 178
Query 528 C-TCTCGATAGTGAAATGAAAAGAAAAGCTGCAGCTTACACCAACAAGCCATCGTCGTCT 586
| | |||||| ||||||||||||||||||||||||||||| || ||| || | ||||||
Sbjct 179 CAT-TCGATATTGAAATGAAAAGAAAAGCTGCAGCTTACAACAGCAAACC-T--TCGTCT 234
Query 587 CTGAATGCACCAACTCTAAA-CAAAACACCTGAACTCCCTAAAGCAGCTCCACGGTCTGA 645
|||||||||||||||||||| | ||| ||| |||||||| |||||||||||||| |||||
Sbjct 235 CTGAATGCACCAACTCTAAATC-AAATACCCGAACTCCCGAAAGCAGCTCCACGTTCTGA 293
Query 646 CTGGAGAAGCAAAGTGAACTCTCAAGTCGTTGAGGATGCAATTGATCACTTTACTCGTCA 705
||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 294 CTGGAGAAGTAAAGTGAACTCTCAAGTTGTTGAGGATGCAATTGATCACTTCACCCGTCA 353
Query 706 CCTCATTTCTGAATGGGTTCTGGATCTTTGGTACTCTCGAATTACACCGGATAAGCAAGG 765
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 354 CCTCATTTCTGAATGGGTACTGGATCTTTGGTACTCCCGCATTACACCGGATAAGCAAGG 413
Query 766 TCCTGAAGAACTGGTGTTTATTATTAACGATGTTCTTGGGGAACTTTCACGGCGGTTTAG 825
||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 414 TCCTGAAGAGTTGGTGTTTATTATCAACCATGTTCTTGGGGAACTTTCACGGCGGTTTAG 473
Query 826 AAATGTAAATCTTATTGATCTATTGACAAGGGATTTGATTGATATTATATGTCGCCGTGT 885
||| |||||||||||||||||||||||||||||| | |||||||||||||| || |||||
Sbjct 474 AAACGTAAATCTTATTGATCTATTGACAAGGGATCTAATTGATATTATATGCCGTCGTGT 533
Query 886 GGAGCTTTTCCGCGAGTGTCAAGCAAAGATTGAGAGACAACAAAGGAGAAGCCTCAGTTT 945
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 534 GGAGCTTTTCCGCGAGTGTCAAGCAAAGATTGAGAGACAACAAAGGAGAAACCTCAGTTT 593
Query 946 TGAAGACAGAGACTCAGAACTAAGACGTGTGATGGCCAG-TGAAGATAAATTGCACCCTG 1004
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 594 TGAAGACCGAGACTCAGAACTAAGACGTGTGATGGCC-GCTGAAGATAAATTGCACCCTG 652
Query 1005 CTTTGTTCTCTCCTGAATCCGAGCATAAGGTTCTGCAACATATAGTGAACAGTCTCATTT 1064
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 653 CGTTGTTCTCTCCTGAATCCGAGCATAAGGTTCTGCAACATATAATGAACAGCCTCATTT 712
Query 1065 TAGTAACATTTAGGCCAGAGGATCTGCACTGTGCTTTTTTCCACTATACCGTGAGGGAGC 1124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TACTAACATTTAGGCCAGAGGATCTGCACTGTGCTTTTTTCCACTATACCGTGAGGGAGC 772
Query 1125 TTTTTGCTTGCTGTGTGATCCGACCAGTCCTAAACCTAGCCAATCCTCGGTTCATAAATG 1184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTCTTGCTTGCTGTGTGATCCGACCAGTCCTAAACCTAGCCAATCCTCGGTTCATAAATG 832
Query 1185 AGAGGATTGAAGCTGCTGTAATGTCAAGGATAAAGACTACTATCAGATCTAGTGCTGCAG 1244
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 833 AGAGGATTGAAGCTGCTGTAATGTCAAAGATAAAGACTAGTAACAGATCTAGTGCTGCAG 892
Query 1245 AAGAGGCTTCTCAGTCTGAAGATCTCTCAAATGTTTCTCCTGATCATTTTTCTAGATATA 1304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AAGAGGCTTCTCAGTCTGAAGATCTCTCAAATGTTTCTCCTGATCATTTTTCTAGATATC 952
Query 1305 TGGACCCCTCTGTCACAGGTGTTGAGCTTGTGCAGTTGaaaaatgaacagcaaaaaaatt 1364
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 953 TGGACCCCTCTGTCACAGGTGTTGAGCTTGTGCAATTGAAAAATGAACAGCAGAAAAATT 1012
Query 1365 ctaaaaag-aaaaGCGCTACAGATAAACAGCATGTAAAAGAGCTCTCTAAAGATCCATTG 1423
|| ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1013 CT-AAAAGAAAAAGCGCTACAGATAAACAGCATGTACCAGATTTCTCTAAAGATCCATTG 1071
Query 1424 CTTTCTATGGACACTCGATCTTCCCGATCGTGGAACTCTTTCCCCTCAACATCCAAAATA 1483
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1072 CTTTCTATGGACACTCGATCTTCCCGATCGTGGAACTCCTTCCCCTCGACTTCCAAAATA 1131
Query 1484 GGTGATGGTAGTAAAGATCCTCAAGGACATCGAGGAGGAGAGGGTTGGGGTGACGTGTTA 1543
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1132 GGTGATGGTAGTAAAGATCCTCAAGGACATCGAGGAGGAGAGGGATGGGGTGACGTATTA 1191
Query 1544 GACATGATGTCACAAAGGAAAACTGAGACCCTTGCTCCTGAGCATCTTGAAAGCGTGTGG 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1192 GACATGATGTCACAAAGGAAAACTGAGACCCTTGCTCCTGAGCATCTTGAAAGTGTGTGG 1251
Query 1604 GCAAAAGGAAGAAACTATAAAAAGAAGGAAGGTGGGAAAGTTGATGAGCGCGTGCCCCCG 1663
|||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||
Sbjct 1252 GCAAAAGGAAGAAACTATAAAATGAAGGACGGTGAGAAAGTTGAGGAGCGCGTGCCCCCG 1311
Query 1664 AGATGGTCTAGCAAGGCTGGTGACTGCAATGAAAACACTGTGAATGCAAGAGAGTCCAGT 1723
|||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1312 AGATGGTCTAGCAAGGATAGTGACTTCAATGAAAACACTGTGAATGCAAGAGAGTCCAGT 1371
Query 1724 CAGCGTAAAGTTGTAAATACAGACAGTCATTTATCAAGTTATTCCTCTGCTGAAGAGGAT 1783
||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1372 CAGCGTAAAGTCGTAATTACAGACAGTCACTTATCAAGTTATTCCTCTGCTGAAGAGGAC 1431
Query 1784 GAGGAGCAAACAAAGAGTAGTCATTCTTATACATCCGAGGATGAGGAAACGGTAACAGGT 1843
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1432 GAGGAGCAAACAAAGAGTAGTCATTCTTATACATCGGAGGATGAGGAAACGGTAACAGGT 1491
Query 1844 CTAAACAGTCCTGGGACTCGTGTCTGGGATGGTCGAACGAAGAAAAATCTTGGTGTTTCA 1903
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1492 CTAAACAGTCCTGGGACTCGAGTCTGGGATGGTCGAACGAAGAAAAATCTTGGTGTTTCA 1551
Query 1904 CGGATACACCATCCACTTGAAAATTCAGGCCGTTCTTTAAAAAAGACCAGTAAAGGGCAT 1963
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1552 CGGATACACCATCCACTTGAAAATTCAGGCCGTTTTTTCAAAAAGACCAGTAAAGGGCAT 1611
Query 1964 GAACGTTATCAGCAAGTACCCGGTCATCAATCTGGCAGGAAGAGATCCAGAATTTCTGGT 2023
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1612 GAACGTTATCAGCAAGTACCTGGACATCAATCTGGCAGGAAGAGATCCAGAATTTCTGGT 1671
Query 2024 CATATTATAGACGATGATGATAGTGATGATTCTGAAGATGGTTCTTTGACTAGATCATAC 2083
|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1672 CATACTATAGGCGATGATGATAGCGATGATTCTGAAGATGGTTCTTTGACTAGATCATAC 1731
Query 2084 AGTGGAATGTCTGCAACGTCATCTACATCATACGTTTCAGCGGCAGAAAGTGACCTTCCC 2143
|| ||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||
Sbjct 1732 AGCGGAATGTCTGCAACGTCATCTGCATCATATGTTTCAGTGGCAGAAAGTGAACTTCCC 1791
Query 2144 AATGCCCCTAAAAGTTCTTTGTTGGTTGATTCCTTTGCGAAGTTGAGATGTGAGGTTCTG 2203
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 AATGCCCCTAGAAGTTCTTTGTTGGTTGATTCCTTTGCGAAGTTGAGATGTGAGGTTCTG 1851
Query 2204 GGTGCCAATATTGTGAAGGGTAGTTCTAAGATGTTTGCTGTGTATTCAGTTGCAGTCACA 2263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GGTGCCAATATTGTGAAGGGTAGTTCTAAGATGTTTGCTGTGTATTCAGTTGCAGTCACA 1911
Query 2264 GATGAAAGTAATCATAGCTGGTCTATCAAAAGAAGATTTCGACATTTTGAGGAGCTTCAC 2323
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1912 GATGAAAATAATCATAGCTGGTCTATCAAAAGAAGATTTCGACATTTTGAAGAGCTTCAC 1971
Query 2324 CGACGGCTAAAAGTGTTTCCTGAGTACAAACTTCATTTACCGCCAAAGCATTTCCTATCA 2383
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1972 CGACGGCTTAAAGTGTTTCCTGAGTACAATCTTCATTTACCGCCGAAGCATTTCCTATCA 2031
Query 2384 ACAGGCGTGGACATACCTGTTATCCAAGAGCGATGTGTACTACTTGACGAGTATATCAAG 2443
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2032 ACAGGCGTGGATATACCTGTTATCCAAGAGAGATGTGTACTACTTGACGAGTATATCAAG 2091
Query 2444 AAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTG 2503
|| | | | | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2092 ---CT-----A-C-A-A-CGAATTTCAGGCTCAATTGAAGTTTGGGACTTCCTCAGTGTG 2139
Query 2504 GATTCTCAGACTTATGCGTTCTCAAGTTCCTTCTCAATCATTGAGACGCTAACAGTTAAA 2563
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2140 GATTCCCAGACTTATGCTTTCTCAAGTTCTTTCTCAATCATTGAGACGCTAACAGTTAAA 2199
Query 2564 CCTGTCAATAAGACATCTACTGTCGCTACAAATATAGCAAGTATGACTC-AGGCAGCACC 2622
||||||| |||| |||| |||||| |||||||||| |||| |||||| | ||||| ||
Sbjct 2200 CCTGTCAGTAAGCCATCCACTGTCACTACAAATATGGCAAATATGAC-CGAGGCAATGCC 2258
Query 2623 AGGTCCGCTTCCTCGGAGGGAAAATCTGAGTTCTGAGAATGGGATATCGGGTCAAAATAT 2682
|||||| |||||| |||| |||||||| ||||| |||||||||| |||||||||||||||
Sbjct 2259 AGGTCCTCTTCCTTGGAGAGAAAATCTAAGTTCAGAGAATGGGAAATCGGGTCAAAATAT 2318
Query 2683 GAGGAATAACGTTATGGTGGATGATGTAAAGTCAAAAGTGAAAAATCTTGGAAATGATCA 2742
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2319 GAGGAATAACGTTATGGTGGATGATGTGAAGTCAAAAGTGAAAACTCTTGGAAATGATCA 2378
Query 2743 TGTGAAGACACCTGATGTAGATGTGAGAAACCGCAAAGAGAATGGCGGGCTAAAAGTGGG 2802
| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2379 TATGAAGACGCCTGATTTAGATGTGAGAAACCGCAAAGAAAATGGCGGGCTAAAAGTGGG 2438
Query 2803 TAC-TCAACATGCCGATGATGTGGCCTGCGCTGGCCTGCCCACCGAGTGGGTTCCTCCAA 2861
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 -ACCTGGACATGCCGATGATGTGGCCTGCGCTGGCCTGCCCACCGAGTGGGTTCCTCCAA 2497
Query 2862 AGCTAACATTACCCTTGCTAGACTTAGTAGATGTTGTCTTTCAACTCCAGGAGGGTGGGT 2921
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2498 AGCTAACTTTACCCTTGCTAGACTTAGTAGATGTTGTCTTTCAACTCCAGGAGGGTGGAT 2557
Query 2922 GGATCAGGCGGAAAGCTTTTTGGGTTGCCAAACAGATACTTCAACTTGGGATGGGGGACG 2981
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2558 GGATCAGGCGGAAAGCTTTCTGGGTTGCCAAACAGATACTTCAACTTGGGATGGGCGACG 2617
Query 2982 CATTGGACGATTGGGTACTTGAAAAAATTTGTCTTTTGCGGCGGGGAACTGTAGTTGCTT 3041
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 2618 CATTGGACGATTGGGTACTTGAGAAAATCCGTCTTCTGCGGCGGGGAACTGTAGTTGCAT 2677
Query 3042 CTGGAATTCAACGGGTTGAACAGATACTATGGCCGGATGGTGTATTCATGACAAAGCATC 3101
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2678 CTGGAATTCAACGGGTTGAACAAATACTATGGCCGGATGGTGTATTCATGACAAAACATC 2737
Query 3102 CAAAAAGGCAGCAACAATCCAGCATTTCTGAAGAGGAGCAGAAACAAGAAGCAGAGAGAC 3161
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2738 CAAAAAGGCAGCAACAATCCAGCATTTCTGAAGAAGAGCAGCGACAAGAAGCAGAGAGAC 2797
Query 3162 GAGCAA-AGTTTGTTCATGAGCTGATGAT 3189
|||||| | ||||||||||||||||||||
Sbjct 2798 GAGCAAGA-TTTGTTCATGAGCTGATGAT 2825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128824884605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5