BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G15250.1

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920429 jgi|Araly1|920429|scaffold_101710.1                        503    6e-142


> Ahg920429 jgi|Araly1|920429|scaffold_101710.1
Length=331

 Score =  503 bits (272),  Expect = 6e-142
 Identities = 314/333 (94%), Gaps = 7/333 (2%)
 Strand=Plus/Plus

Query  73   TCATCCCCTGCATCTGCGGCAATGGGTAAAGGAACAGGGAGCTTTGGTAAGAGGAGGAAC  132
            |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    TCAT-CCCTGCATCTGCGGCAATGGGTAAGGGAACAGGGAGCTTTGGTAAGAGGAGGAAC  59

Query  133  AAGTCACACACGCTCTGTGTGAGATGTGGTCGCCGGAGCTTTCACATCCAGAAGAGTCGT  192
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  60   AAGTCACACACGCTCTGTGTGAGATGTGGTCGCCGAAGCTTTCACATCCAGAAGAGTCGT  119

Query  193  TGCTCGGCATGTGCTTATCCAGCTGCCAGAAAGAGGACATATAACTGGAGTGTGAAGGCA  252
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  120  TGCTCGGCATGTGCTTATCCAGCTGCCAGAAAGAGGACATATAACTGGAGCGTGAAAGCA  179

Query  253  ATAAGAAGAAAGACAACAGGAACTGGTAGGATGAGGTATCTCCGTAATGTCCCTCGAAGG  312
            |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct  180  ATAAGAAGAAAGACAACAGGAACTGGTAGGATGAGGTATCTCCGCAATGTGCCTCGTAGG  239

Query  313  TTCAAGACTTGCTTTAGAGAAGGTACGCAAGCCACCCC-A-A-GAAACAAAG-CTGCAGC  368
            ||||||||| |||||||||||||||| ||||||||||| | | ||||||| | |||||||
Sbjct  240  TTCAAGACTGGCTTTAGAGAAGGTACCCAAGCCACCCCTAGAAGAAACAA-GTCTGCAGC  298

Query  369  TTCGTCTTCCTAGGCATT-GTTCAGTTTGCGTT  400
            | | |||||||||||||| ||||| ||||||||
Sbjct  299  TGCTTCTTCCTAGGCATTTGTTCATTTTGCGTT  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19764595102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5